RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 HILS1P60008 231 aa11.29□□□□□ -0.6
CCDC47-201ENST00000225726 RPL11P62913 178 aaKnown RBP11.29□□□□□ -0.6
CCDC47-201ENST00000225726 IQCJQ1A5X6 159 aa11.29□□□□□ -0.6
CCDC47-201ENST00000225726 TCF24Q7RTU0 167 aa11.29□□□□□ -0.6
CCDC47-201ENST00000225726 NUP35Q8NFH5 326 aa11.29□□□□□ -0.6
CCDC47-201ENST00000225726 Q8TAT8 98 aa11.29□□□□□ -0.6
CCDC47-201ENST00000225726 WIPF2Q8TF74 440 aaPredicted RBP11.29□□□□□ -0.6
CCDC47-201ENST00000225726 HECTD1Q9ULT8 2610 aa11.28□□□□□ -0.6
CCDC47-201ENST00000225726 GRIFINA4D1Z8 144 aa11.28□□□□□ -0.6
CCDC47-201ENST00000225726 FAM231BA6NCW3 169 aa11.28□□□□□ -0.6
CCDC47-201ENST00000225726 WDR73Q6P4I2 378 aa11.28□□□□□ -0.6
CCDC47-201ENST00000225726 OR2D3Q8NGH3 330 aa11.28□□□□□ -0.6
CCDC47-201ENST00000225726 C20orf173Q96LM9 149 aa11.28□□□□□ -0.6
CCDC47-201ENST00000225726 GNB1LQ9BYB4 327 aa11.28□□□□□ -0.6
CCDC47-201ENST00000225726 TLN2Q9Y4G6 2542 aa11.28□□□□□ -0.6
CCDC47-201ENST00000225726 SAMD13Q5VXD3 122 aa11.28□□□□□ -0.6
CCDC47-201ENST00000225726 C18orf65Q6ZTR6 163 aa11.28□□□□□ -0.6
CCDC47-201ENST00000225726 HIGD1CA8MV81 97 aa11.28□□□□□ -0.6
CCDC47-201ENST00000225726 KLF5Q13887 457 aaPredicted RBP11.28□□□□□ -0.6
CCDC47-201ENST00000225726 FAM162BQ5T6X4 162 aa11.28□□□□□ -0.6
CCDC47-201ENST00000225726 RASL11AQ6T310 242 aa11.28□□□□□ -0.6
CCDC47-201ENST00000225726 STPG4Q8N801 248 aa11.28□□□□□ -0.6
CCDC47-201ENST00000225726 ZNF738Q8NE65 137 aa11.28□□□□□ -0.6
CCDC47-201ENST00000225726 WFDC12Q8WWY7 111 aa11.28□□□□□ -0.6
CCDC47-201ENST00000225726 LINC01619G3V211 115 aa11.27□□□□□ -0.61
CCDC47-201ENST00000225726 SPINK4O60575 86 aa11.27□□□□□ -0.61
CCDC47-201ENST00000225726 CBLN1P23435 193 aa11.27□□□□□ -0.61
CCDC47-201ENST00000225726 C9orf47Q6ZRZ4 202 aa11.27□□□□□ -0.61
CCDC47-201ENST00000225726 TMEM256Q8N2U0 113 aa11.27□□□□□ -0.61
CCDC47-201ENST00000225726 ANK3Q12955 4377 aaKnown RBP11.27□□□□□ -0.61
CCDC47-201ENST00000225726 MT-ND6P03923 174 aa11.27□□□□□ -0.61
CCDC47-201ENST00000225726 TMEM78Q5T7P6 136 aa11.27□□□□□ -0.61
CCDC47-201ENST00000225726 MRPL54Q6P161 138 aaKnown RBP11.27□□□□□ -0.61
CCDC47-201ENST00000225726 AGPAT4-IT1Q9H0P7 198 aa11.27□□□□□ -0.61
CCDC47-201ENST00000225726 SH2D1AO60880 128 aa11.26□□□□□ -0.61
CCDC47-201ENST00000225726 OVOL1O14753 267 aa11.26□□□□□ -0.61
CCDC47-201ENST00000225726 FRMD6-AS1P0C7T7 363 aa11.26□□□□□ -0.61
CCDC47-201ENST00000225726 ZNF138P52744 262 aa11.26□□□□□ -0.61
CCDC47-201ENST00000225726 KHDC1LQ5JSQ8 128 aa11.26□□□□□ -0.61
CCDC47-201ENST00000225726 ATP5L2Q7Z4Y8 100 aa11.26□□□□□ -0.61
CCDC47-201ENST00000225726 MRPL18Q9H0U6 180 aaKnown RBP11.26□□□□□ -0.61
CCDC47-201ENST00000225726 NAGKQ9UJ70 344 aa11.26□□□□□ -0.61
CCDC47-201ENST00000225726 SNURFLB1AK76 121 aa11.26□□□□□ -0.61
CCDC47-201ENST00000225726 KRTDAPP60985 99 aa11.26□□□□□ -0.61
CCDC47-201ENST00000225726 TMEM136Q6ZRR5 245 aa11.26□□□□□ -0.61
CCDC47-201ENST00000225726 GTSF1Q8WW33 167 aa11.26□□□□□ -0.61
CCDC47-201ENST00000225726 TMEM18Q96B42 140 aa11.26□□□□□ -0.61
CCDC47-201ENST00000225726 JMJD8Q96S16 334 aa11.26□□□□□ -0.61
CCDC47-201ENST00000225726 COL5A1-AS1Q5SY13 56 aa11.25□□□□□ -0.61
CCDC47-201ENST00000225726 RBPMS2Q6ZRY4 209 aaKnown RBP11.25□□□□□ -0.61
CCDC47-201ENST00000225726 SONP18583 2426 aaKnown RBP11.25□□□□□ -0.61
CCDC47-201ENST00000225726 C2orf70A6NJV1 201 aa11.25□□□□□ -0.61
CCDC47-201ENST00000225726 DEFB136Q30KP8 78 aa11.25□□□□□ -0.61
CCDC47-201ENST00000225726 KLHL30-AS1Q8NEE0 82 aa11.25□□□□□ -0.61
CCDC47-201ENST00000225726 OR1N2Q8NGR9 330 aa11.25□□□□□ -0.61
CCDC47-201ENST00000225726 DPF1Q92782 380 aa11.25□□□□□ -0.61
CCDC47-201ENST00000225726 ID1P41134 155 aa11.25□□□□□ -0.61
CCDC47-201ENST00000225726 SLURP1P55000 103 aa11.25□□□□□ -0.61
CCDC47-201ENST00000225726 Q6ZN92 141 aa11.24□□□□□ -0.61
CCDC47-201ENST00000225726 OR11H1Q8NG94 326 aa11.24□□□□□ -0.61
CCDC47-201ENST00000225726 TP73-AS1Q9UF72 201 aa11.24□□□□□ -0.61
CCDC47-201ENST00000225726 IGKV3-7A0A075B6H7 116 aa11.24□□□□□ -0.61
CCDC47-201ENST00000225726 CIDEAO60543 219 aa11.24□□□□□ -0.61
CCDC47-201ENST00000225726 HLA-DQA1P01909 254 aa11.24□□□□□ -0.61
CCDC47-201ENST00000225726 FOXA3P55318 350 aaPredicted RBP11.24□□□□□ -0.61
CCDC47-201ENST00000225726 OR10J6PQ8NGY7 276 aa11.24□□□□□ -0.61
CCDC47-201ENST00000225726 LINC01006Q8NI28 216 aa11.24□□□□□ -0.61
CCDC47-201ENST00000225726 DCANP1Q8TF63 244 aa11.24□□□□□ -0.61
CCDC47-201ENST00000225726 ZNF80P51504 273 aaPredicted RBP11.23□□□□□ -0.61
CCDC47-201ENST00000225726 SRSF2Q01130 221 aaKnown RBP11.23□□□□□ -0.61
CCDC47-201ENST00000225726 PGLYRP4Q96LB8 373 aa11.23□□□□□ -0.61
CCDC47-201ENST00000225726 LENEPQ9Y5L5 61 aa11.23□□□□□ -0.61
CCDC47-201ENST00000225726 ACANP16112 2415 aa11.23□□□□□ -0.61
CCDC47-201ENST00000225726 A0A1B0GXF2 115 aa11.23□□□□□ -0.61
CCDC47-201ENST00000225726 TMEM189A5PLL7 270 aa11.23□□□□□ -0.61
CCDC47-201ENST00000225726 NDUFA7O95182 113 aa11.23□□□□□ -0.61
CCDC47-201ENST00000225726 LINC00477Q96M19 166 aa11.23□□□□□ -0.61
CCDC47-201ENST00000225726 MYO9AB2RTY4 2548 aa11.23□□□□□ -0.61
CCDC47-201ENST00000225726 VAMP8Q9BV40 100 aa11.23□□□□□ -0.61
CCDC47-201ENST00000225726 MS4A6AQ9H2W1 248 aa11.23□□□□□ -0.61
CCDC47-201ENST00000225726 NUPR1O60356 82 aa11.22□□□□□ -0.61
CCDC47-201ENST00000225726 Q6AWC8 147 aa11.22□□□□□ -0.61
CCDC47-201ENST00000225726 PEMTQ9UBM1 199 aa11.22□□□□□ -0.61
CCDC47-201ENST00000225726 FABP5P3A8MUU1 101 aa11.22□□□□□ -0.61
CCDC47-201ENST00000225726 RPS20P60866 119 aaKnown RBP11.22□□□□□ -0.61
CCDC47-201ENST00000225726 COA6Q5JTJ3 125 aaKnown RBP11.22□□□□□ -0.61
CCDC47-201ENST00000225726 CD28P10747 220 aa11.21□□□□□ -0.61
CCDC47-201ENST00000225726 HBBP68871 147 aa11.21□□□□□ -0.61
CCDC47-201ENST00000225726 CDKN1BP46527 198 aa11.21□□□□□ -0.62
CCDC47-201ENST00000225726 SAMD10Q9BYL1 202 aa11.21□□□□□ -0.62
CCDC47-201ENST00000225726 WFDC3Q8IUB2 231 aa11.21□□□□□ -0.62
CCDC47-201ENST00000225726 OR8A1Q8NGG7 326 aa11.21□□□□□ -0.62
CCDC47-201ENST00000225726 HIST1H1AQ02539 215 aaPredicted RBP11.2□□□□□ -0.62
CCDC47-201ENST00000225726 ADAMTSL5Q6ZMM2 481 aa11.2□□□□□ -0.62
CCDC47-201ENST00000225726 OR9G4Q8NGQ1 327 aa11.2□□□□□ -0.62
CCDC47-201ENST00000225726 SVIPQ8NHG7 77 aa11.2□□□□□ -0.62
CCDC47-201ENST00000225726 K7EQG2 157 aa11.2□□□□□ -0.62
CCDC47-201ENST00000225726 APCSP02743 223 aa11.2□□□□□ -0.62
CCDC47-201ENST00000225726 GDF5OSQ5U4N7 250 aa11.2□□□□□ -0.62
CCDC47-201ENST00000225726 DUX3Q96PT4 197 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 151.5 ms