RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 FAM19A4Q96LR4 140 aa13.36□□□□□ -0.27
CCDC28A-203ENST00000617445 LINC00467Q9BRT7 94 aa13.36□□□□□ -0.27
CCDC28A-203ENST00000617445 OR51M1Q9H341 326 aa13.36□□□□□ -0.27
CCDC28A-203ENST00000617445 CRISP2P16562 243 aa13.35□□□□□ -0.27
CCDC28A-203ENST00000617445 H2BFSP57053 126 aa13.35□□□□□ -0.27
CCDC28A-203ENST00000617445 C1orf134Q5TEV5 83 aa13.35□□□□□ -0.27
CCDC28A-203ENST00000617445 MIR17HGQ75NE6 70 aa13.35□□□□□ -0.27
CCDC28A-203ENST00000617445 ZNF680Q8NEM1 530 aa13.35□□□□□ -0.27
CCDC28A-203ENST00000617445 AGPAT4-IT1Q9H0P7 198 aa13.35□□□□□ -0.27
CCDC28A-203ENST00000617445 PTTG1O95997 202 aa13.34□□□□□ -0.27
CCDC28A-203ENST00000617445 M6PRP20645 277 aa13.34□□□□□ -0.27
CCDC28A-203ENST00000617445 ERCC8Q13216 396 aa13.34□□□□□ -0.27
CCDC28A-203ENST00000617445 ICAM4Q14773 271 aa13.34□□□□□ -0.27
CCDC28A-203ENST00000617445 TMEM78Q5T7P6 136 aa13.34□□□□□ -0.27
CCDC28A-203ENST00000617445 EXOC3-AS1Q8N2X6 119 aa13.34□□□□□ -0.27
CCDC28A-203ENST00000617445 RNF141Q8WVD5 230 aa13.34□□□□□ -0.27
CCDC28A-203ENST00000617445 ATP5SQ99766 215 aa13.34□□□□□ -0.27
CCDC28A-203ENST00000617445 PAXXQ9BUH6 204 aa13.34□□□□□ -0.27
CCDC28A-203ENST00000617445 FUT9Q9Y231 359 aa13.34□□□□□ -0.27
CCDC28A-203ENST00000617445 TRBV7-9A0A0J9YWB2 115 aa13.33□□□□□ -0.28
CCDC28A-203ENST00000617445 H3BNG1 76 aa13.33□□□□□ -0.28
CCDC28A-203ENST00000617445 ZNF324O75467 553 aaPredicted RBP13.33□□□□□ -0.28
CCDC28A-203ENST00000617445 MPC2O95563 127 aa13.33□□□□□ -0.28
CCDC28A-203ENST00000617445 OR5I1Q13606 314 aa13.33□□□□□ -0.28
CCDC28A-203ENST00000617445 ANXA2RQ3ZCQ2 193 aa13.33□□□□□ -0.28
CCDC28A-203ENST00000617445 LYPD1Q8N2G4 141 aa13.33□□□□□ -0.28
CCDC28A-203ENST00000617445 ZNRF2Q8NHG8 242 aa13.33□□□□□ -0.28
CCDC28A-203ENST00000617445 GNPNAT1Q96EK6 184 aaPredicted RBP13.33□□□□□ -0.28
CCDC28A-203ENST00000617445 DNAH17Q9UFH2 4485 aa13.32□□□□□ -0.28
CCDC28A-203ENST00000617445 GAGE12BA1L429 117 aa13.32□□□□□ -0.28
CCDC28A-203ENST00000617445 GAGE7O76087 117 aa13.32□□□□□ -0.28
CCDC28A-203ENST00000617445 GPX1P07203 203 aa13.32□□□□□ -0.28
CCDC28A-203ENST00000617445 GAGE12FP0CL80 117 aa13.32□□□□□ -0.28
CCDC28A-203ENST00000617445 GAGE12GP0CL81 117 aa13.32□□□□□ -0.28
CCDC28A-203ENST00000617445 GAGE12IP0CL82 117 aa13.32□□□□□ -0.28
CCDC28A-203ENST00000617445 EIF4E3Q8N5X7 224 aaKnown RBP13.32□□□□□ -0.28
CCDC28A-203ENST00000617445 RXFP4Q8TDU9 374 aa13.32□□□□□ -0.28
CCDC28A-203ENST00000617445 C18orf15Q96N68 181 aa13.32□□□□□ -0.28
CCDC28A-203ENST00000617445 HSPB11Q9Y547 144 aa13.32□□□□□ -0.28
CCDC28A-203ENST00000617445 FAT2Q9NYQ8 4349 aa13.32□□□□□ -0.28
CCDC28A-203ENST00000617445 DNAH2Q9P225 4427 aa13.31□□□□□ -0.28
CCDC28A-203ENST00000617445 TRAV26-1A0A087WT03 109 aa13.31□□□□□ -0.28
CCDC28A-203ENST00000617445 IFNA5P01569 189 aa13.31□□□□□ -0.28
CCDC28A-203ENST00000617445 RNASE4P34096 147 aaKnown RBP13.31□□□□□ -0.28
CCDC28A-203ENST00000617445 FAM122CQ6P4D5 195 aa13.31□□□□□ -0.28
CCDC28A-203ENST00000617445 SCGB1C1Q8TD33 95 aa13.31□□□□□ -0.28
CCDC28A-203ENST00000617445 FXYD5Q96DB9 178 aa13.31□□□□□ -0.28
CCDC28A-203ENST00000617445 ZNF492Q9P255 531 aa13.31□□□□□ -0.28
CCDC28A-203ENST00000617445 NBDYA0A0U1RRE5 68 aa13.3□□□□□ -0.28
CCDC28A-203ENST00000617445 RBAKDNA6NC62 111 aa13.3□□□□□ -0.28
CCDC28A-203ENST00000617445 OR7C2O60412 319 aa13.3□□□□□ -0.28
CCDC28A-203ENST00000617445 RPL12P30050 165 aaKnown RBP13.3□□□□□ -0.28
CCDC28A-203ENST00000617445 CSN1S1P47710 185 aa13.3□□□□□ -0.28
CCDC28A-203ENST00000617445 TAS2R45P59539 299 aa13.3□□□□□ -0.28
CCDC28A-203ENST00000617445 CD300CQ08708 224 aa13.3□□□□□ -0.28
CCDC28A-203ENST00000617445 LINC00588Q9Y4M8 146 aa13.3□□□□□ -0.28
CCDC28A-203ENST00000617445 MUC4Q99102 2169 aa13.3□□□□□ -0.28
CCDC28A-203ENST00000617445 IGKV2-40A0A087WW87 121 aaPredicted RBP13.29□□□□□ -0.28
CCDC28A-203ENST00000617445 IGKV2D-40P01614 121 aaPredicted RBP13.29□□□□□ -0.28
CCDC28A-203ENST00000617445 OR10J4P0C629 311 aa13.29□□□□□ -0.28
CCDC28A-203ENST00000617445 ZNF138P52744 262 aa13.29□□□□□ -0.28
CCDC28A-203ENST00000617445 BTN1A1Q13410 526 aa13.29□□□□□ -0.28
CCDC28A-203ENST00000617445 FFAR4Q5NUL3 377 aa13.29□□□□□ -0.28
CCDC28A-203ENST00000617445 IBA57Q5T440 356 aaKnown RBP13.29□□□□□ -0.28
CCDC28A-203ENST00000617445 SSX7Q7RTT5 188 aa13.29□□□□□ -0.28
CCDC28A-203ENST00000617445 ZFAND2AQ8N6M9 145 aa13.29□□□□□ -0.28
CCDC28A-203ENST00000617445 C11orf72Q8NBR9 251 aa13.29□□□□□ -0.28
CCDC28A-203ENST00000617445 VGLL1Q99990 258 aa13.29□□□□□ -0.28
CCDC28A-203ENST00000617445 GSN-AS1Q9NRJ2 163 aa13.29□□□□□ -0.28
CCDC28A-203ENST00000617445 ALG5Q9Y673 324 aa13.29□□□□□ -0.28
CCDC28A-203ENST00000617445 RGS13O14921 159 aa13.28□□□□□ -0.28
CCDC28A-203ENST00000617445 MED14OSP0DP75 135 aa13.28□□□□□ -0.28
CCDC28A-203ENST00000617445 HOXA5P20719 270 aa13.28□□□□□ -0.28
CCDC28A-203ENST00000617445 KHDC3LQ587J8 217 aa13.28□□□□□ -0.28
CCDC28A-203ENST00000617445 Q6ZTI0 123 aa13.28□□□□□ -0.28
CCDC28A-203ENST00000617445 TRGV2A0A075B6R0 118 aa13.27□□□□□ -0.29
CCDC28A-203ENST00000617445 TCL1AP56279 114 aa13.27□□□□□ -0.29
CCDC28A-203ENST00000617445 RANP62826 216 aaKnown RBP13.27□□□□□ -0.29
CCDC28A-203ENST00000617445 PHYHIPLQ96FC7 376 aa13.27□□□□□ -0.29
CCDC28A-203ENST00000617445 PKHD1P08F94 4074 aa13.27□□□□□ -0.29
CCDC28A-203ENST00000617445 A0A0J9YY99 117 aa13.26□□□□□ -0.29
CCDC28A-203ENST00000617445 UBE2L3P68036 154 aaKnown RBP13.26□□□□□ -0.29
CCDC28A-203ENST00000617445 C6orf223Q8N319 242 aa13.26□□□□□ -0.29
CCDC28A-203ENST00000617445 TMPRSS5Q9H3S3 457 aa13.26□□□□□ -0.29
CCDC28A-203ENST00000617445 Q9H8V8 135 aa13.26□□□□□ -0.29
CCDC28A-203ENST00000617445 MBD2Q9UBB5 411 aa13.26□□□□□ -0.29
CCDC28A-203ENST00000617445 LENEPQ9Y5L5 61 aa13.26□□□□□ -0.29
CCDC28A-203ENST00000617445 IGHV1OR15-1A0A075B7D0 117 aa13.25□□□□□ -0.29
CCDC28A-203ENST00000617445 TRGV1A0A0A0MS02 117 aa13.25□□□□□ -0.29
CCDC28A-203ENST00000617445 SPINK4O60575 86 aa13.25□□□□□ -0.29
CCDC28A-203ENST00000617445 TTC32Q5I0X7 151 aa13.25□□□□□ -0.29
CCDC28A-203ENST00000617445 UPK3BQ9BT76 320 aa13.25□□□□□ -0.29
CCDC28A-203ENST00000617445 Q9H3A6 140 aa13.25□□□□□ -0.29
CCDC28A-203ENST00000617445 ZNF266Q14584 549 aa13.24□□□□□ -0.29
CCDC28A-203ENST00000617445 ACOT6Q3I5F7 207 aaPredicted RBP13.24□□□□□ -0.29
CCDC28A-203ENST00000617445 ARL6IP6Q8N6S5 226 aa13.24□□□□□ -0.29
CCDC28A-203ENST00000617445 TMED6Q8WW62 240 aa13.24□□□□□ -0.29
CCDC28A-203ENST00000617445 ARPC5LQ9BPX5 153 aa13.24□□□□□ -0.29
CCDC28A-203ENST00000617445 SMIM3Q9BZL3 60 aa13.24□□□□□ -0.29
CCDC28A-203ENST00000617445 MED28Q9H204 178 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms