RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 KLLNB2CW77 178 aa13.97□□□□□ -0.17
SHKBP1-221ENST00000599833 LINC00477Q96M19 166 aa13.97□□□□□ -0.17
SHKBP1-221ENST00000599833 OTORQ9NRC9 128 aa13.97□□□□□ -0.17
SHKBP1-221ENST00000599833 CTXND1A0A1B0GTU2 59 aa13.96□□□□□ -0.17
SHKBP1-221ENST00000599833 RBAKDNA6NC62 111 aa13.96□□□□□ -0.17
SHKBP1-221ENST00000599833 DIRC3C9JPN6 131 aa13.96□□□□□ -0.17
SHKBP1-221ENST00000599833 CRISP2P16562 243 aa13.96□□□□□ -0.17
SHKBP1-221ENST00000599833 AZU1P20160 251 aa13.96□□□□□ -0.17
SHKBP1-221ENST00000599833 FHITP49789 147 aa13.96□□□□□ -0.17
SHKBP1-221ENST00000599833 PRR9Q5T870 116 aa13.96□□□□□ -0.17
SHKBP1-221ENST00000599833 ZFAND2AQ8N6M9 145 aa13.96□□□□□ -0.17
SHKBP1-221ENST00000599833 STOML3Q8TAV4 291 aa13.96□□□□□ -0.17
SHKBP1-221ENST00000599833 C11orf45Q8TAV5 145 aa13.96□□□□□ -0.17
SHKBP1-221ENST00000599833 CXorf1O96002 111 aa13.95□□□□□ -0.18
SHKBP1-221ENST00000599833 SLC25A5P05141 298 aaKnown RBP13.95□□□□□ -0.18
SHKBP1-221ENST00000599833 SEC11BP0C7V7 166 aa13.95□□□□□ -0.18
SHKBP1-221ENST00000599833 ZNF471Q9BX82 626 aaPredicted RBP13.95□□□□□ -0.18
SHKBP1-221ENST00000599833 ZNF492Q9P255 531 aa13.95□□□□□ -0.18
SHKBP1-221ENST00000599833 KANTRA0A1W2PQU2 76 aa13.94□□□□□ -0.18
SHKBP1-221ENST00000599833 PGPA6NDG6 321 aa13.94□□□□□ -0.18
SHKBP1-221ENST00000599833 ZNF705GA8MUZ8 300 aaPredicted RBP13.94□□□□□ -0.18
SHKBP1-221ENST00000599833 GGTLC3B5MD39 225 aa13.94□□□□□ -0.18
SHKBP1-221ENST00000599833 PMS2P11Q13670 270 aa13.94□□□□□ -0.18
SHKBP1-221ENST00000599833 AKR1C8PQ5T2L2 129 aa13.94□□□□□ -0.18
SHKBP1-221ENST00000599833 AKAP14Q86UN6 197 aa13.94□□□□□ -0.18
SHKBP1-221ENST00000599833 ARL6IP6Q8N6S5 226 aa13.94□□□□□ -0.18
SHKBP1-221ENST00000599833 C20orf144Q9BQM9 153 aa13.94□□□□□ -0.18
SHKBP1-221ENST00000599833 TMPRSS5Q9H3S3 457 aa13.94□□□□□ -0.18
SHKBP1-221ENST00000599833 PPP1R14DQ9NXH3 145 aa13.94□□□□□ -0.18
SHKBP1-221ENST00000599833 LOC102723971A0A1B0GUV8 181 aa13.93□□□□□ -0.18
SHKBP1-221ENST00000599833 ZNF324O75467 553 aaPredicted RBP13.93□□□□□ -0.18
SHKBP1-221ENST00000599833 HBE1P02100 147 aa13.93□□□□□ -0.18
SHKBP1-221ENST00000599833 TSPOP30536 169 aa13.93□□□□□ -0.18
SHKBP1-221ENST00000599833 LEPP41159 167 aa13.93□□□□□ -0.18
SHKBP1-221ENST00000599833 C12orf74Q32Q52 190 aa13.93□□□□□ -0.18
SHKBP1-221ENST00000599833 Q6ZQT7 251 aa13.93□□□□□ -0.18
SHKBP1-221ENST00000599833 TMEM256Q8N2U0 113 aa13.93□□□□□ -0.18
SHKBP1-221ENST00000599833 Q8TAT8 98 aa13.93□□□□□ -0.18
SHKBP1-221ENST00000599833 PHLDA1Q8WV24 401 aaPredicted RBP13.93□□□□□ -0.18
SHKBP1-221ENST00000599833 TRBV7-9A0A0J9YWB2 115 aa13.92□□□□□ -0.18
SHKBP1-221ENST00000599833 FGF8P55075 233 aaPredicted RBP13.92□□□□□ -0.18
SHKBP1-221ENST00000599833 GNG5P63218 68 aa13.92□□□□□ -0.18
SHKBP1-221ENST00000599833 BTN1A1Q13410 526 aa13.92□□□□□ -0.18
SHKBP1-221ENST00000599833 RRN3P1Q2M238 152 aa13.92□□□□□ -0.18
SHKBP1-221ENST00000599833 CEMP1Q6PRD7 247 aaPredicted RBP13.92□□□□□ -0.18
SHKBP1-221ENST00000599833 C9orf62Q8N4C0 152 aa13.92□□□□□ -0.18
SHKBP1-221ENST00000599833 TMEM167BQ9NRX6 74 aa13.92□□□□□ -0.18
SHKBP1-221ENST00000599833 DKK2Q9UBU2 259 aa13.92□□□□□ -0.18
SHKBP1-221ENST00000599833 YTHDF2Q9Y5A9 579 aaKnown RBP13.92□□□□□ -0.18
SHKBP1-221ENST00000599833 TMEM189A5PLL7 270 aa13.91□□□□□ -0.18
SHKBP1-221ENST00000599833 CXorf65A6NEN9 183 aa13.91□□□□□ -0.18
SHKBP1-221ENST00000599833 J3KRW8 73 aa13.91□□□□□ -0.18
SHKBP1-221ENST00000599833 NMBP08949 121 aa13.91□□□□□ -0.18
SHKBP1-221ENST00000599833 ZNF138P52744 262 aa13.91□□□□□ -0.18
SHKBP1-221ENST00000599833 TAS2R60P59551 318 aa13.91□□□□□ -0.18
SHKBP1-221ENST00000599833 Q6ZTC4 211 aa13.91□□□□□ -0.18
SHKBP1-221ENST00000599833 RNASE8Q8TDE3 154 aaKnown RBP13.91□□□□□ -0.18
SHKBP1-221ENST00000599833 RXFP4Q8TDU9 374 aa13.91□□□□□ -0.18
SHKBP1-221ENST00000599833 TVP23CQ96ET8 276 aa13.91□□□□□ -0.18
SHKBP1-221ENST00000599833 HYLS1Q96M11 299 aa13.91□□□□□ -0.18
SHKBP1-221ENST00000599833 TRAV12-3A0A0B4J271 114 aa13.9□□□□□ -0.18
SHKBP1-221ENST00000599833 C7orf71A4D174 169 aa13.9□□□□□ -0.18
SHKBP1-221ENST00000599833 CSN1S1P47710 185 aa13.9□□□□□ -0.18
SHKBP1-221ENST00000599833 TMEM78Q5T7P6 136 aa13.9□□□□□ -0.18
SHKBP1-221ENST00000599833 ZNF767PQ75MW2 155 aa13.9□□□□□ -0.18
SHKBP1-221ENST00000599833 TMED6Q8WW62 240 aa13.9□□□□□ -0.18
SHKBP1-221ENST00000599833 MBD3L1Q8WWY6 194 aa13.9□□□□□ -0.18
SHKBP1-221ENST00000599833 LINC01587Q99440 93 aa13.9□□□□□ -0.18
SHKBP1-221ENST00000599833 TMEM208Q9BTX3 173 aa13.9□□□□□ -0.18
SHKBP1-221ENST00000599833 TRAV8-1A0A0A6YYK1 113 aa13.89□□□□□ -0.19
SHKBP1-221ENST00000599833 A0A1W2PRE2 83 aa13.89□□□□□ -0.19
SHKBP1-221ENST00000599833 MAP1LC3B2A6NCE7 125 aa13.89□□□□□ -0.19
SHKBP1-221ENST00000599833 H7BYZ3 331 aa13.89□□□□□ -0.19
SHKBP1-221ENST00000599833 TPT1P13693 172 aaKnown RBP13.89□□□□□ -0.19
SHKBP1-221ENST00000599833 FAM222AQ5U5X8 452 aa13.89□□□□□ -0.19
SHKBP1-221ENST00000599833 GOLT1AQ6ZVE7 132 aa13.89□□□□□ -0.19
SHKBP1-221ENST00000599833 MAP1LC3BQ9GZQ8 125 aa13.89□□□□□ -0.19
SHKBP1-221ENST00000599833 NUPR2A6NF83 97 aa13.88□□□□□ -0.19
SHKBP1-221ENST00000599833 UMAD1C9J7I0 102 aa13.88□□□□□ -0.19
SHKBP1-221ENST00000599833 PFDN1O60925 122 aa13.88□□□□□ -0.19
SHKBP1-221ENST00000599833 IGLV2-11P01706 119 aa13.88□□□□□ -0.19
SHKBP1-221ENST00000599833 TCRAP04437 139 aa13.88□□□□□ -0.19
SHKBP1-221ENST00000599833 EMP1P54849 157 aa13.88□□□□□ -0.19
SHKBP1-221ENST00000599833 C5orf17Q8NAS9 161 aa13.88□□□□□ -0.19
SHKBP1-221ENST00000599833 LINC00467Q9BRT7 94 aa13.88□□□□□ -0.19
SHKBP1-221ENST00000599833 FAM74A7A6NL05 159 aa13.87□□□□□ -0.19
SHKBP1-221ENST00000599833 SUMO1P63165 101 aaKnown RBP13.87□□□□□ -0.19
SHKBP1-221ENST00000599833 FAM74A1Q5RGS3 127 aa13.87□□□□□ -0.19
SHKBP1-221ENST00000599833 CMTM2Q8TAZ6 248 aa13.87□□□□□ -0.19
SHKBP1-221ENST00000599833 LENEPQ9Y5L5 61 aa13.87□□□□□ -0.19
SHKBP1-221ENST00000599833 SPART-AS1P0CW21 52 aa13.86□□□□□ -0.19
SHKBP1-221ENST00000599833 CCDC28AQ8IWP9 274 aa13.86□□□□□ -0.19
SHKBP1-221ENST00000599833 FAM213BQ8TBF2 198 aa13.86□□□□□ -0.19
SHKBP1-221ENST00000599833 TMEM263Q8WUH6 116 aaKnown RBP13.86□□□□□ -0.19
SHKBP1-221ENST00000599833 EPDR1Q9UM22 224 aa13.86□□□□□ -0.19
SHKBP1-221ENST00000599833 RPH3ALQ9UNE2 315 aa13.86□□□□□ -0.19
SHKBP1-221ENST00000599833 FRAS1Q86XX4 4008 aa13.86□□□□□ -0.19
SHKBP1-221ENST00000599833 RNASE4P34096 147 aaKnown RBP13.85□□□□□ -0.19
SHKBP1-221ENST00000599833 UBE2G2P60604 165 aa13.85□□□□□ -0.19
SHKBP1-221ENST00000599833 EIF5AP63241 154 aaKnown RBP13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 109 ms