RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 PARD6GQ9BYG4 376 aaPredicted RBP9.45□□□□□ -0.9
TRIM28-211ENST00000597968 AAMDCQ9H7C9 122 aa9.45□□□□□ -0.9
TRIM28-211ENST00000597968 ZNF586Q9NXT0 402 aa9.45□□□□□ -0.9
TRIM28-211ENST00000597968 GAGE12BA1L429 117 aa9.44□□□□□ -0.9
TRIM28-211ENST00000597968 C7orf71A4D174 169 aa9.44□□□□□ -0.9
TRIM28-211ENST00000597968 A6NHS1 94 aa9.44□□□□□ -0.9
TRIM28-211ENST00000597968 GAGE7O76087 117 aa9.44□□□□□ -0.9
TRIM28-211ENST00000597968 GAGE12FP0CL80 117 aa9.44□□□□□ -0.9
TRIM28-211ENST00000597968 GAGE12GP0CL81 117 aa9.44□□□□□ -0.9
TRIM28-211ENST00000597968 GAGE12IP0CL82 117 aa9.44□□□□□ -0.9
TRIM28-211ENST00000597968 CRISP2P16562 243 aa9.44□□□□□ -0.9
TRIM28-211ENST00000597968 BAXQ07812 192 aa9.44□□□□□ -0.9
TRIM28-211ENST00000597968 SLAQ13239 276 aa9.44□□□□□ -0.9
TRIM28-211ENST00000597968 IBA57Q5T440 356 aaKnown RBP9.44□□□□□ -0.9
TRIM28-211ENST00000597968 C9orf47Q6ZRZ4 202 aa9.44□□□□□ -0.9
TRIM28-211ENST00000597968 EIF4E3Q8N5X7 224 aaKnown RBP9.44□□□□□ -0.9
TRIM28-211ENST00000597968 S100ZQ8WXG8 99 aa9.44□□□□□ -0.9
TRIM28-211ENST00000597968 MUC4Q99102 2169 aa9.44□□□□□ -0.9
TRIM28-211ENST00000597968 ZNF324O75467 553 aaPredicted RBP9.43□□□□□ -0.9
TRIM28-211ENST00000597968 UPK1BO75841 260 aa9.43□□□□□ -0.9
TRIM28-211ENST00000597968 HOXA5P20719 270 aa9.43□□□□□ -0.9
TRIM28-211ENST00000597968 NHLH2Q02577 135 aa9.43□□□□□ -0.9
TRIM28-211ENST00000597968 ENKURQ8TC29 256 aa9.43□□□□□ -0.9
TRIM28-211ENST00000597968 KCNIP2Q9NS61 270 aa9.43□□□□□ -0.9
TRIM28-211ENST00000597968 TIMM9Q9Y5J7 89 aa9.43□□□□□ -0.9
TRIM28-211ENST00000597968 DNAH5Q8TE73 4624 aa9.43□□□□□ -0.9
TRIM28-211ENST00000597968 TRGV2A0A075B6R0 118 aa9.42□□□□□ -0.9
TRIM28-211ENST00000597968 FGF7P21781 194 aa9.42□□□□□ -0.9
TRIM28-211ENST00000597968 TCL1AP56279 114 aa9.42□□□□□ -0.9
TRIM28-211ENST00000597968 ESRGQ1W209 222 aa9.42□□□□□ -0.9
TRIM28-211ENST00000597968 GCSAMLQ5JQS6 135 aa9.42□□□□□ -0.9
TRIM28-211ENST00000597968 C11orf72Q8NBR9 251 aa9.42□□□□□ -0.9
TRIM28-211ENST00000597968 NPCDR1Q9BY65 106 aa9.42□□□□□ -0.9
TRIM28-211ENST00000597968 GPN1Q9HCN4 374 aaPredicted RBP9.42□□□□□ -0.9
TRIM28-211ENST00000597968 A0A0J9YY99 117 aa9.41□□□□□ -0.9
TRIM28-211ENST00000597968 H0YIZ8 118 aa9.41□□□□□ -0.9
TRIM28-211ENST00000597968 J3KRW8 73 aa9.41□□□□□ -0.9
TRIM28-211ENST00000597968 K7EP13 123 aa9.41□□□□□ -0.9
TRIM28-211ENST00000597968 NDUFB4O95168 129 aa9.41□□□□□ -0.9
TRIM28-211ENST00000597968 LRRC37A5PQ49AS3 106 aa9.41□□□□□ -0.9
TRIM28-211ENST00000597968 TMEM78Q5T7P6 136 aa9.41□□□□□ -0.9
TRIM28-211ENST00000597968 Q6ZTI0 123 aa9.41□□□□□ -0.9
TRIM28-211ENST00000597968 MRPL32Q9BYC8 188 aaKnown RBP9.41□□□□□ -0.9
TRIM28-211ENST00000597968 SLC25A31Q9H0C2 315 aa9.41□□□□□ -0.9
TRIM28-211ENST00000597968 TMPRSS5Q9H3S3 457 aa9.41□□□□□ -0.9
TRIM28-211ENST00000597968 OR5AC2Q9NZP5 309 aa9.41□□□□□ -0.9
TRIM28-211ENST00000597968 APOBP04114 4563 aaKnown RBP9.41□□□□□ -0.9
TRIM28-211ENST00000597968 A0A096LPF7 62 aa9.4□□□□□ -0.9
TRIM28-211ENST00000597968 INMT-MINDY4F8WBC2 141 aa9.4□□□□□ -0.9
TRIM28-211ENST00000597968 M0R3E3 92 aa9.4□□□□□ -0.9
TRIM28-211ENST00000597968 SPINK4O60575 86 aa9.4□□□□□ -0.9
TRIM28-211ENST00000597968 GPX1P07203 203 aa9.4□□□□□ -0.9
TRIM28-211ENST00000597968 LYPD1Q8N2G4 141 aa9.4□□□□□ -0.9
TRIM28-211ENST00000597968 THAP6Q8TBB0 222 aa9.4□□□□□ -0.9
TRIM28-211ENST00000597968 ST6GAL2Q96JF0 529 aa9.4□□□□□ -0.9
TRIM28-211ENST00000597968 AGPAT4-IT1Q9H0P7 198 aa9.4□□□□□ -0.9
TRIM28-211ENST00000597968 GSN-AS1Q9NRJ2 163 aa9.4□□□□□ -0.9
TRIM28-211ENST00000597968 FUT9Q9Y231 359 aa9.4□□□□□ -0.9
TRIM28-211ENST00000597968 E5RGE8 158 aa9.39□□□□□ -0.91
TRIM28-211ENST00000597968 NBEAP1P0C6P0 100 aa9.39□□□□□ -0.91
TRIM28-211ENST00000597968 PYYP10082 97 aa9.39□□□□□ -0.91
TRIM28-211ENST00000597968 CYCSP99999 105 aaKnown RBP9.39□□□□□ -0.91
TRIM28-211ENST00000597968 OR5C1Q8NGR4 320 aa9.39□□□□□ -0.91
TRIM28-211ENST00000597968 VSIG2Q96IQ7 327 aa9.39□□□□□ -0.91
TRIM28-211ENST00000597968 NMES1Q9C002 83 aa9.39□□□□□ -0.91
TRIM28-211ENST00000597968 ZNF492Q9P255 531 aa9.39□□□□□ -0.91
TRIM28-211ENST00000597968 PRO0255Q9UI72 69 aa9.39□□□□□ -0.91
TRIM28-211ENST00000597968 TRGV1A0A0A0MS02 117 aa9.38□□□□□ -0.91
TRIM28-211ENST00000597968 RBAKDNA6NC62 111 aa9.38□□□□□ -0.91
TRIM28-211ENST00000597968 SIVA1O15304 175 aa9.38□□□□□ -0.91
TRIM28-211ENST00000597968 ERCC8Q13216 396 aa9.38□□□□□ -0.91
TRIM28-211ENST00000597968 SPATA12Q7Z6I5 190 aa9.38□□□□□ -0.91
TRIM28-211ENST00000597968 Q8N1X5 172 aa9.38□□□□□ -0.91
TRIM28-211ENST00000597968 MAPKAPK5-AS1Q8N8E1 139 aa9.38□□□□□ -0.91
TRIM28-211ENST00000597968 BLNKQ8WV28 456 aa9.38□□□□□ -0.91
TRIM28-211ENST00000597968 VGLL1Q99990 258 aa9.38□□□□□ -0.91
TRIM28-211ENST00000597968 KRTAP1-5Q9BYS1 174 aa9.38□□□□□ -0.91
TRIM28-211ENST00000597968 OR51M1Q9H341 326 aa9.38□□□□□ -0.91
TRIM28-211ENST00000597968 PTTG2Q9NZH5 202 aa9.38□□□□□ -0.91
TRIM28-211ENST00000597968 KLF12Q9Y4X4 402 aa9.38□□□□□ -0.91
TRIM28-211ENST00000597968 LENEPQ9Y5L5 61 aa9.38□□□□□ -0.91
TRIM28-211ENST00000597968 ICOSQ9Y6W8 199 aa9.38□□□□□ -0.91
TRIM28-211ENST00000597968 IGHV1OR15-1A0A075B7D0 117 aa9.37□□□□□ -0.91
TRIM28-211ENST00000597968 C17orf112F2Z3M2 114 aa9.37□□□□□ -0.91
TRIM28-211ENST00000597968 RGS13O14921 159 aa9.37□□□□□ -0.91
TRIM28-211ENST00000597968 RNASE4P34096 147 aaKnown RBP9.37□□□□□ -0.91
TRIM28-211ENST00000597968 ZNF138P52744 262 aa9.37□□□□□ -0.91
TRIM28-211ENST00000597968 H2BFSP57053 126 aa9.37□□□□□ -0.91
TRIM28-211ENST00000597968 CD300CQ08708 224 aa9.37□□□□□ -0.91
TRIM28-211ENST00000597968 BTN1A1Q13410 526 aa9.37□□□□□ -0.91
TRIM28-211ENST00000597968 ICAM4Q14773 271 aa9.37□□□□□ -0.91
TRIM28-211ENST00000597968 MIR17HGQ75NE6 70 aa9.37□□□□□ -0.91
TRIM28-211ENST00000597968 EXOC3-AS1Q8N2X6 119 aa9.37□□□□□ -0.91
TRIM28-211ENST00000597968 ZFAND2AQ8N6M9 145 aa9.37□□□□□ -0.91
TRIM28-211ENST00000597968 FAM167A-AS1Q96KT0 104 aa9.37□□□□□ -0.91
TRIM28-211ENST00000597968 ARPC5LQ9BPX5 153 aa9.37□□□□□ -0.91
TRIM28-211ENST00000597968 SLC25A2Q9BXI2 301 aa9.37□□□□□ -0.91
TRIM28-211ENST00000597968 PGPEP1Q9NXJ5 209 aa9.37□□□□□ -0.91
TRIM28-211ENST00000597968 TP53TG3Q9ULZ0 132 aa9.37□□□□□ -0.91
TRIM28-211ENST00000597968 PAX4O43316 350 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 108.6 ms