RNA–Protein interactions for RNA: ENST00000594298.5

SHKBP1-203, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 716 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-203ENST00000594298 LEPP41159 167 aa12.48□□□□□ -0.41
SHKBP1-203ENST00000594298 CSN1S1P47710 185 aa12.48□□□□□ -0.41
SHKBP1-203ENST00000594298 CDC34P49427 236 aaPredicted RBP12.48□□□□□ -0.41
SHKBP1-203ENST00000594298 RRN3P1Q2M238 152 aa12.48□□□□□ -0.41
SHKBP1-203ENST00000594298 C1orf158Q8N1D5 194 aa12.48□□□□□ -0.41
SHKBP1-203ENST00000594298 EXOC3-AS1Q8N2X6 119 aa12.48□□□□□ -0.41
SHKBP1-203ENST00000594298 LINC00477Q96M19 166 aa12.48□□□□□ -0.41
SHKBP1-203ENST00000594298 ODF3Q96PU9 254 aa12.48□□□□□ -0.41
SHKBP1-203ENST00000594298 DKK2Q9UBU2 259 aa12.48□□□□□ -0.41
SHKBP1-203ENST00000594298 HMSDA8MTL9 139 aa12.47□□□□□ -0.41
SHKBP1-203ENST00000594298 NPIPB6E9PJ23 425 aa12.47□□□□□ -0.41
SHKBP1-203ENST00000594298 SMLR1H3BR10 107 aa12.47□□□□□ -0.41
SHKBP1-203ENST00000594298 M0R3E3 92 aa12.47□□□□□ -0.41
SHKBP1-203ENST00000594298 CRXO43186 299 aaPredicted RBP12.47□□□□□ -0.41
SHKBP1-203ENST00000594298 EMP1P54849 157 aa12.47□□□□□ -0.41
SHKBP1-203ENST00000594298 RANP62826 216 aaKnown RBP12.47□□□□□ -0.41
SHKBP1-203ENST00000594298 FAM74A1Q5RGS3 127 aa12.47□□□□□ -0.41
SHKBP1-203ENST00000594298 TMEM256Q8N2U0 113 aa12.47□□□□□ -0.41
SHKBP1-203ENST00000594298 ZNF503Q96F45 646 aa12.47□□□□□ -0.41
SHKBP1-203ENST00000594298 ACTR3CQ9C0K3 210 aaPredicted RBP12.47□□□□□ -0.41
SHKBP1-203ENST00000594298 ZNF345Q14585 488 aa12.46□□□□□ -0.41
SHKBP1-203ENST00000594298 Q6ZR54 194 aa12.46□□□□□ -0.41
SHKBP1-203ENST00000594298 BAP18Q8IXM2 172 aa12.46□□□□□ -0.41
SHKBP1-203ENST00000594298 RXFP4Q8TDU9 374 aa12.46□□□□□ -0.41
SHKBP1-203ENST00000594298 LINC01587Q99440 93 aa12.46□□□□□ -0.41
SHKBP1-203ENST00000594298 C20orf144Q9BQM9 153 aa12.46□□□□□ -0.41
SHKBP1-203ENST00000594298 NIPSNAP3BQ9BS92 247 aa12.46□□□□□ -0.41
SHKBP1-203ENST00000594298 TRAV12-2A0A075B6T6 113 aa12.45□□□□□ -0.42
SHKBP1-203ENST00000594298 A0A0D9SG52 128 aa12.45□□□□□ -0.42
SHKBP1-203ENST00000594298 CT45A10P0DMU9 189 aa12.45□□□□□ -0.42
SHKBP1-203ENST00000594298 PRB4P10163 310 aaPredicted RBP12.45□□□□□ -0.42
SHKBP1-203ENST00000594298 TMEM78Q5T7P6 136 aa12.45□□□□□ -0.42
SHKBP1-203ENST00000594298 FAM222AQ5U5X8 452 aa12.45□□□□□ -0.42
SHKBP1-203ENST00000594298 KCNRGQ8N5I3 272 aa12.45□□□□□ -0.42
SHKBP1-203ENST00000594298 PHYHIPLQ96FC7 376 aa12.45□□□□□ -0.42
SHKBP1-203ENST00000594298 ARPC5LQ9BPX5 153 aa12.45□□□□□ -0.42
SHKBP1-203ENST00000594298 SH3BGRL3Q9H299 93 aa12.45□□□□□ -0.42
SHKBP1-203ENST00000594298 Q9H3A6 140 aa12.45□□□□□ -0.42
SHKBP1-203ENST00000594298 LOC102723971A0A1B0GUV8 181 aa12.44□□□□□ -0.42
SHKBP1-203ENST00000594298 STAG3L2P0CL84 134 aa12.44□□□□□ -0.42
SHKBP1-203ENST00000594298 STAG3L3P0CL85 134 aa12.44□□□□□ -0.42
SHKBP1-203ENST00000594298 RNF212Q495C1 297 aa12.44□□□□□ -0.42
SHKBP1-203ENST00000594298 Q6ZNX1 250 aa12.44□□□□□ -0.42
SHKBP1-203ENST00000594298 C9orf47Q6ZRZ4 202 aa12.44□□□□□ -0.42
SHKBP1-203ENST00000594298 UBE2DNLQ8IWF7 75 aa12.44□□□□□ -0.42
SHKBP1-203ENST00000594298 RAB24Q969Q5 203 aa12.44□□□□□ -0.42
SHKBP1-203ENST00000594298 OTORQ9NRC9 128 aa12.44□□□□□ -0.42
SHKBP1-203ENST00000594298 RYR1P21817 5038 aa12.43□□□□□ -0.42
SHKBP1-203ENST00000594298 TAS2R60P59551 318 aa12.43□□□□□ -0.42
SHKBP1-203ENST00000594298 ERCC8Q13216 396 aa12.43□□□□□ -0.42
SHKBP1-203ENST00000594298 AKR1C8PQ5T2L2 129 aa12.43□□□□□ -0.42
SHKBP1-203ENST00000594298 CMTM2Q8TAZ6 248 aa12.43□□□□□ -0.42
SHKBP1-203ENST00000594298 AGPAT4-IT1Q9H0P7 198 aa12.43□□□□□ -0.42
SHKBP1-203ENST00000594298 PKD1P98161 4303 aa12.43□□□□□ -0.42
SHKBP1-203ENST00000594298 IGLV2-18A0A075B6J9 118 aa12.42□□□□□ -0.42
SHKBP1-203ENST00000594298 KANTRA0A1W2PQU2 76 aa12.42□□□□□ -0.42
SHKBP1-203ENST00000594298 RBAKDNA6NC62 111 aa12.42□□□□□ -0.42
SHKBP1-203ENST00000594298 PGPA6NDG6 321 aa12.42□□□□□ -0.42
SHKBP1-203ENST00000594298 H7BYZ3 331 aa12.42□□□□□ -0.42
SHKBP1-203ENST00000594298 HMGB3O15347 200 aaKnown RBP12.42□□□□□ -0.42
SHKBP1-203ENST00000594298 EIF3GO75821 320 aaKnown RBP eCLIP12.42□□□□□ -0.42
SHKBP1-203ENST00000594298 CXorf1O96002 111 aa12.42□□□□□ -0.42
SHKBP1-203ENST00000594298 SLC25A5P05141 298 aaKnown RBP12.42□□□□□ -0.42
SHKBP1-203ENST00000594298 ARL14EPLP0DKL9 152 aa12.42□□□□□ -0.42
SHKBP1-203ENST00000594298 EIF5AP63241 154 aaKnown RBP12.42□□□□□ -0.42
SHKBP1-203ENST00000594298 ARL6IP6Q8N6S5 226 aa12.42□□□□□ -0.42
SHKBP1-203ENST00000594298 CYTL1Q9NRR1 136 aa12.42□□□□□ -0.42
SHKBP1-203ENST00000594298 TMEM167BQ9NRX6 74 aa12.42□□□□□ -0.42
SHKBP1-203ENST00000594298 ZNF705GA8MUZ8 300 aaPredicted RBP12.41□□□□□ -0.42
SHKBP1-203ENST00000594298 NMBP08949 121 aa12.41□□□□□ -0.42
SHKBP1-203ENST00000594298 SOHLH1Q5JUK2 328 aa12.41□□□□□ -0.42
SHKBP1-203ENST00000594298 CCDC28AQ8IWP9 274 aa12.41□□□□□ -0.42
SHKBP1-203ENST00000594298 OR11H4Q8NGC9 324 aa12.41□□□□□ -0.42
SHKBP1-203ENST00000594298 YTHDF2Q9Y5A9 579 aaKnown RBP12.41□□□□□ -0.42
SHKBP1-203ENST00000594298 IGKV2-40A0A087WW87 121 aaPredicted RBP12.4□□□□□ -0.42
SHKBP1-203ENST00000594298 TRBV7-9A0A0J9YWB2 115 aa12.4□□□□□ -0.42
SHKBP1-203ENST00000594298 IGKV2D-40P01614 121 aaPredicted RBP12.4□□□□□ -0.42
SHKBP1-203ENST00000594298 GCHFRP30047 84 aa12.4□□□□□ -0.42
SHKBP1-203ENST00000594298 ZNF138P52744 262 aa12.4□□□□□ -0.42
SHKBP1-203ENST00000594298 GFI1BQ5VTD9 330 aa12.4□□□□□ -0.42
SHKBP1-203ENST00000594298 HYLS1Q96M11 299 aa12.4□□□□□ -0.42
SHKBP1-203ENST00000594298 PLA2G2EQ9NZK7 142 aa12.4□□□□□ -0.42
SHKBP1-203ENST00000594298 CTXND1A0A1B0GTU2 59 aa12.39□□□□□ -0.43
SHKBP1-203ENST00000594298 DIRC3C9JPN6 131 aa12.39□□□□□ -0.43
SHKBP1-203ENST00000594298 J3KRW8 73 aa12.39□□□□□ -0.43
SHKBP1-203ENST00000594298 BCL2L11O43521 198 aa12.39□□□□□ -0.43
SHKBP1-203ENST00000594298 PFDN1O60925 122 aa12.39□□□□□ -0.43
SHKBP1-203ENST00000594298 GPX1P07203 203 aa12.39□□□□□ -0.43
SHKBP1-203ENST00000594298 HTN1P15515 57 aa12.39□□□□□ -0.43
SHKBP1-203ENST00000594298 CRISP2P16562 243 aa12.39□□□□□ -0.43
SHKBP1-203ENST00000594298 ZNF493Q6ZR52 646 aa12.39□□□□□ -0.43
SHKBP1-203ENST00000594298 TCTE3Q8IZS6 198 aa12.39□□□□□ -0.43
SHKBP1-203ENST00000594298 SUN5Q8TC36 379 aa12.39□□□□□ -0.43
SHKBP1-203ENST00000594298 ST6GAL2Q96JF0 529 aa12.39□□□□□ -0.43
SHKBP1-203ENST00000594298 FAM19A4Q96LR4 140 aa12.39□□□□□ -0.43
SHKBP1-203ENST00000594298 VGLL1Q99990 258 aa12.39□□□□□ -0.43
SHKBP1-203ENST00000594298 ZNF471Q9BX82 626 aaPredicted RBP12.39□□□□□ -0.43
SHKBP1-203ENST00000594298 ZNF492Q9P255 531 aa12.39□□□□□ -0.43
SHKBP1-203ENST00000594298 TRAV12-3A0A0B4J271 114 aa12.38□□□□□ -0.43
SHKBP1-203ENST00000594298 C7orf71A4D174 169 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms