RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 K7EIL1 84 aa0.56□□□□□ -2.32
SMCHD1-204ENST00000581226 CIRBPQ14011 172 aaKnown RBP0.56□□□□□ -2.32
SMCHD1-204ENST00000581226 LINC00575Q6W349 94 aa0.56□□□□□ -2.32
SMCHD1-204ENST00000581226 TEX29Q8N6K0 151 aa0.56□□□□□ -2.32
SMCHD1-204ENST00000581226 ISOC1Q96CN7 298 aa0.56□□□□□ -2.32
SMCHD1-204ENST00000581226 CENPHQ9H3R5 247 aa0.56□□□□□ -2.32
SMCHD1-204ENST00000581226 ATPIF1Q9UII2 106 aa0.56□□□□□ -2.32
SMCHD1-204ENST00000581226 TPRKBQ9Y3C4 175 aa0.56□□□□□ -2.32
SMCHD1-204ENST00000581226 TRAV23DV6A0A075B6W5 121 aa0.55□□□□□ -2.32
SMCHD1-204ENST00000581226 A0A0J9YY99 117 aa0.55□□□□□ -2.32
SMCHD1-204ENST00000581226 SDC2P34741 201 aa0.55□□□□□ -2.32
SMCHD1-204ENST00000581226 FOXA3P55318 350 aaPredicted RBP0.55□□□□□ -2.32
SMCHD1-204ENST00000581226 FXYD4P59646 89 aa0.55□□□□□ -2.32
SMCHD1-204ENST00000581226 MRPS36P82909 103 aaKnown RBP0.55□□□□□ -2.32
SMCHD1-204ENST00000581226 VMA21Q3ZAQ7 101 aa0.55□□□□□ -2.32
SMCHD1-204ENST00000581226 SPATA45Q537H7 98 aa0.55□□□□□ -2.32
SMCHD1-204ENST00000581226 CLEC2BQ92478 149 aa0.55□□□□□ -2.32
SMCHD1-204ENST00000581226 NABP2Q9BQ15 211 aa0.55□□□□□ -2.32
SMCHD1-204ENST00000581226 EFCAB11Q9BUY7 163 aa0.55□□□□□ -2.32
SMCHD1-204ENST00000581226 FKBP11Q9NYL4 201 aa0.55□□□□□ -2.32
SMCHD1-204ENST00000581226 ATG2AQ2TAZ0 1938 aa0.55□□□□□ -2.32
SMCHD1-204ENST00000581226 WDR97A6NE52 1622 aa0.54□□□□□ -2.32
SMCHD1-204ENST00000581226 TRBV7-6A0A0J9YX20 115 aa0.54□□□□□ -2.32
SMCHD1-204ENST00000581226 TRBV27A0A0K0K1C4 114 aa0.54□□□□□ -2.32
SMCHD1-204ENST00000581226 A0A1B0GV72 72 aa0.54□□□□□ -2.32
SMCHD1-204ENST00000581226 A0A1W2PPM0 123 aa0.54□□□□□ -2.32
SMCHD1-204ENST00000581226 PRORSD1PA6NEY8 169 aa0.54□□□□□ -2.32
SMCHD1-204ENST00000581226 PDE6GP18545 87 aa0.54□□□□□ -2.32
SMCHD1-204ENST00000581226 B2MP61769 119 aa0.54□□□□□ -2.32
SMCHD1-204ENST00000581226 TFAMQ00059 246 aaKnown RBP0.54□□□□□ -2.32
SMCHD1-204ENST00000581226 OCIAD2Q56VL3 154 aa0.54□□□□□ -2.32
SMCHD1-204ENST00000581226 LINC00305Q7Z4B0 112 aa0.54□□□□□ -2.32
SMCHD1-204ENST00000581226 OR5H6Q8NGV6 325 aa0.54□□□□□ -2.32
SMCHD1-204ENST00000581226 PRELID3AQ96N28 172 aa0.54□□□□□ -2.32
SMCHD1-204ENST00000581226 MCEEQ96PE7 176 aa0.54□□□□□ -2.32
SMCHD1-204ENST00000581226 CCDC32Q9BV29 185 aa0.54□□□□□ -2.32
SMCHD1-204ENST00000581226 DDA1Q9BW61 102 aa0.54□□□□□ -2.32
SMCHD1-204ENST00000581226 CBLN4Q9NTU7 201 aa0.54□□□□□ -2.32
SMCHD1-204ENST00000581226 TRAPPC2LQ9UL33 140 aa0.54□□□□□ -2.32
SMCHD1-204ENST00000581226 LAMTOR2Q9Y2Q5 125 aa0.54□□□□□ -2.32
SMCHD1-204ENST00000581226 A0A0D9SG42 100 aa0.53□□□□□ -2.32
SMCHD1-204ENST00000581226 LOC107984640A0A0U1RRK4 108 aa0.53□□□□□ -2.32
SMCHD1-204ENST00000581226 IFNA21P01568 189 aa0.53□□□□□ -2.32
SMCHD1-204ENST00000581226 MORN4Q8NDC4 146 aa0.53□□□□□ -2.32
SMCHD1-204ENST00000581226 OR4B1Q8NGF8 309 aa0.53□□□□□ -2.32
SMCHD1-204ENST00000581226 CCDC115Q96NT0 180 aa0.53□□□□□ -2.32
SMCHD1-204ENST00000581226 TCEAL2Q9H3H9 227 aaPredicted RBP0.53□□□□□ -2.32
SMCHD1-204ENST00000581226 HSPB8Q9UJY1 196 aa0.53□□□□□ -2.32
SMCHD1-204ENST00000581226 NDUFAF1Q9Y375 327 aa0.53□□□□□ -2.32
SMCHD1-204ENST00000581226 V9GYQ6 96 aa0.53□□□□□ -2.32
SMCHD1-204ENST00000581226 E7EQ34 232 aa0.52□□□□□ -2.33
SMCHD1-204ENST00000581226 MAXP61244 160 aa0.52□□□□□ -2.33
SMCHD1-204ENST00000581226 TMEM128Q5BJH2 165 aa0.52□□□□□ -2.33
SMCHD1-204ENST00000581226 Q5XG85 94 aa0.52□□□□□ -2.33
SMCHD1-204ENST00000581226 TOMM20LQ6UXN7 152 aa0.52□□□□□ -2.33
SMCHD1-204ENST00000581226 CROCCP2Q86T23 111 aa0.52□□□□□ -2.33
SMCHD1-204ENST00000581226 GRPEL2Q8TAA5 225 aa0.52□□□□□ -2.33
SMCHD1-204ENST00000581226 LPAR5Q9H1C0 372 aa0.52□□□□□ -2.33
SMCHD1-204ENST00000581226 C10orf95Q9H7T3 257 aa0.52□□□□□ -2.33
SMCHD1-204ENST00000581226 A0A096LPI6 279 aa0.51□□□□□ -2.33
SMCHD1-204ENST00000581226 TRAV13-1A0A0B4J241 112 aa0.51□□□□□ -2.33
SMCHD1-204ENST00000581226 TRACP01848 142 aa0.51□□□□□ -2.33
SMCHD1-204ENST00000581226 NBEAP1P0C6P0 100 aa0.51□□□□□ -2.33
SMCHD1-204ENST00000581226 NEFHP12036 1026 aa0.51□□□□□ -2.33
SMCHD1-204ENST00000581226 HELZP42694 1942 aaKnown RBP0.51□□□□□ -2.33
SMCHD1-204ENST00000581226 CSAG1Q6PB30 78 aa0.51□□□□□ -2.33
SMCHD1-204ENST00000581226 NAT14Q8WUY8 206 aa0.51□□□□□ -2.33
SMCHD1-204ENST00000581226 USP24Q9UPU5 2620 aa0.51□□□□□ -2.33
SMCHD1-204ENST00000581226 FGD6Q6ZV73 1430 aa0.5□□□□□ -2.33
SMCHD1-204ENST00000581226 C3orf85A0A1B0GTC6 90 aa0.5□□□□□ -2.33
SMCHD1-204ENST00000581226 A6NN06 94 aa0.5□□□□□ -2.33
SMCHD1-204ENST00000581226 H3BMG7 143 aa0.5□□□□□ -2.33
SMCHD1-204ENST00000581226 M0QZK8 103 aa0.5□□□□□ -2.33
SMCHD1-204ENST00000581226 IGHV3-30P01768 117 aa0.5□□□□□ -2.33
SMCHD1-204ENST00000581226 IGHV3-30-5P0DP03 117 aa0.5□□□□□ -2.33
SMCHD1-204ENST00000581226 SLC25A4P12235 298 aa0.5□□□□□ -2.33
SMCHD1-204ENST00000581226 CCL4P13236 92 aa0.5□□□□□ -2.33
SMCHD1-204ENST00000581226 RPL37AP61513 92 aaKnown RBP0.5□□□□□ -2.33
SMCHD1-204ENST00000581226 NEDD8Q15843 81 aa0.5□□□□□ -2.33
SMCHD1-204ENST00000581226 KRTAP21-1Q3LI58 79 aa0.5□□□□□ -2.33
SMCHD1-204ENST00000581226 SPATA8Q6RVD6 105 aa0.5□□□□□ -2.33
SMCHD1-204ENST00000581226 IZUMO2Q6UXV1 221 aa0.5□□□□□ -2.33
SMCHD1-204ENST00000581226 LINC00299Q6ZSB3 139 aa0.5□□□□□ -2.33
SMCHD1-204ENST00000581226 AFDNP55196 1824 aaKnown RBP0.5□□□□□ -2.33
SMCHD1-204ENST00000581226 NAV3Q8IVL0 2385 aa0.49□□□□□ -2.33
SMCHD1-204ENST00000581226 ARAP1Q96P48 1450 aa0.49□□□□□ -2.33
SMCHD1-204ENST00000581226 SAA1P0DJI8 122 aaPredicted RBP0.49□□□□□ -2.33
SMCHD1-204ENST00000581226 TPT1P13693 172 aaKnown RBP0.49□□□□□ -2.33
SMCHD1-204ENST00000581226 CRYGSP22914 178 aa0.49□□□□□ -2.33
SMCHD1-204ENST00000581226 NDUFA6P56556 154 aa0.49□□□□□ -2.33
SMCHD1-204ENST00000581226 CASC2Q6XLA1 102 aa0.49□□□□□ -2.33
SMCHD1-204ENST00000581226 OR51A4Q8NGJ6 313 aa0.49□□□□□ -2.33
SMCHD1-204ENST00000581226 OR9Q1Q8NGQ5 310 aa0.49□□□□□ -2.33
SMCHD1-204ENST00000581226 CCL19Q99731 98 aa0.49□□□□□ -2.33
SMCHD1-204ENST00000581226 A2MP01023 1474 aa0.48□□□□□ -2.33
SMCHD1-204ENST00000581226 LOC285556D6RIA3 1793 aa0.48□□□□□ -2.33
SMCHD1-204ENST00000581226 KIDINS220Q9ULH0 1771 aa0.48□□□□□ -2.33
SMCHD1-204ENST00000581226 NUPR2A6NF83 97 aa0.48□□□□□ -2.33
SMCHD1-204ENST00000581226 ZNF727A8MUV8 499 aa0.48□□□□□ -2.33
SMCHD1-204ENST00000581226 H0YJX3 145 aa0.48□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms