RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 TMEM183AQ8IXX5 376 aa11.41□□□□□ -0.58
SS18-215ENST00000580642 CLUHP3Q96NS8 147 aa11.41□□□□□ -0.58
SS18-215ENST00000580642 NDFIP1Q9BT67 221 aa11.41□□□□□ -0.58
SS18-215ENST00000580642 MLST8Q9BVC4 326 aa11.41□□□□□ -0.58
SS18-215ENST00000580642 RPH3ALQ9UNE2 315 aa11.41□□□□□ -0.58
SS18-215ENST00000580642 TRBV20OR9-2A0A075B6H5 130 aa11.4□□□□□ -0.58
SS18-215ENST00000580642 APOC3P02656 99 aa11.4□□□□□ -0.58
SS18-215ENST00000580642 ZNF138P52744 262 aa11.4□□□□□ -0.58
SS18-215ENST00000580642 Q86TA4 180 aa11.4□□□□□ -0.58
SS18-215ENST00000580642 LINC01551Q86U37 167 aa11.4□□□□□ -0.58
SS18-215ENST00000580642 LINC00479Q96M42 142 aa11.4□□□□□ -0.58
SS18-215ENST00000580642 SAV1Q9H4B6 383 aaPredicted RBP11.4□□□□□ -0.58
SS18-215ENST00000580642 COL6A5A8TX70 2615 aa11.39□□□□□ -0.59
SS18-215ENST00000580642 IGKV2-40A0A087WW87 121 aaPredicted RBP11.39□□□□□ -0.59
SS18-215ENST00000580642 IZUMO1RA6ND01 250 aa11.39□□□□□ -0.59
SS18-215ENST00000580642 PRAC2D3DTV9 90 aa11.39□□□□□ -0.59
SS18-215ENST00000580642 IGKV2D-40P01614 121 aaPredicted RBP11.39□□□□□ -0.59
SS18-215ENST00000580642 RHEBQ15382 184 aa11.39□□□□□ -0.59
SS18-215ENST00000580642 FAM24BQ8N5W8 94 aa11.39□□□□□ -0.59
SS18-215ENST00000580642 AGPAT4-IT1Q9H0P7 198 aa11.39□□□□□ -0.59
SS18-215ENST00000580642 MAP6D1Q9H9H5 199 aa11.39□□□□□ -0.59
SS18-215ENST00000580642 ZNF492Q9P255 531 aa11.39□□□□□ -0.59
SS18-215ENST00000580642 TRAV34A0A0B4J273 112 aa11.38□□□□□ -0.59
SS18-215ENST00000580642 A0A0J9YX75 114 aa11.38□□□□□ -0.59
SS18-215ENST00000580642 A8MTW9 85 aa11.38□□□□□ -0.59
SS18-215ENST00000580642 OR11H12B2RN74 326 aa11.38□□□□□ -0.59
SS18-215ENST00000580642 RPL23P62829 140 aaKnown RBP11.38□□□□□ -0.59
SS18-215ENST00000580642 OCC1Q8TAD7 63 aa11.38□□□□□ -0.59
SS18-215ENST00000580642 PRR25Q96S07 402 aa11.38□□□□□ -0.59
SS18-215ENST00000580642 VGLL1Q99990 258 aa11.38□□□□□ -0.59
SS18-215ENST00000580642 GCGP01275 180 aa11.37□□□□□ -0.59
SS18-215ENST00000580642 IGLV2-8P01709 118 aa11.37□□□□□ -0.59
SS18-215ENST00000580642 HLA-DRB4P13762 266 aa11.37□□□□□ -0.59
SS18-215ENST00000580642 DEFB131AP59861 70 aa11.37□□□□□ -0.59
SS18-215ENST00000580642 PRNTQ86SH4 94 aa11.37□□□□□ -0.59
SS18-215ENST00000580642 CLRN3Q8NCR9 226 aa11.37□□□□□ -0.59
SS18-215ENST00000580642 SELENOKQ9Y6D0 94 aa11.37□□□□□ -0.59
SS18-215ENST00000580642 HLA-DRB4X5D2U9 266 aa11.37□□□□□ -0.59
SS18-215ENST00000580642 A0A087WWC5 75 aa11.36□□□□□ -0.59
SS18-215ENST00000580642 TRAV8-1A0A0A6YYK1 113 aa11.36□□□□□ -0.59
SS18-215ENST00000580642 PPP1R2P9O14990 202 aa11.36□□□□□ -0.59
SS18-215ENST00000580642 CRISP2P16562 243 aa11.36□□□□□ -0.59
SS18-215ENST00000580642 HIST1H1AQ02539 215 aaPredicted RBP11.36□□□□□ -0.59
SS18-215ENST00000580642 ODF3L2Q3SX64 289 aa11.36□□□□□ -0.59
SS18-215ENST00000580642 FAM19A4Q96LR4 140 aa11.36□□□□□ -0.59
SS18-215ENST00000580642 MDFIQ99750 246 aa11.36□□□□□ -0.59
SS18-215ENST00000580642 TMEM242Q9NWH2 141 aa11.36□□□□□ -0.59
SS18-215ENST00000580642 M0R036 132 aa11.35□□□□□ -0.59
SS18-215ENST00000580642 MT-ND4LP03901 98 aa11.35□□□□□ -0.59
SS18-215ENST00000580642 CT45A10P0DMU9 189 aa11.35□□□□□ -0.59
SS18-215ENST00000580642 TSPOP30536 169 aa11.35□□□□□ -0.59
SS18-215ENST00000580642 ADIRFQ15847 76 aa11.35□□□□□ -0.59
SS18-215ENST00000580642 SMUG1Q53HV7 270 aa11.35□□□□□ -0.59
SS18-215ENST00000580642 FAM231DQ6ZW35 169 aa11.35□□□□□ -0.59
SS18-215ENST00000580642 GTSCR1Q86UQ5 136 aa11.35□□□□□ -0.59
SS18-215ENST00000580642 APRG1Q8IVJ8 170 aa11.35□□□□□ -0.59
SS18-215ENST00000580642 ISOC2Q96AB3 205 aa11.35□□□□□ -0.59
SS18-215ENST00000580642 CTDSP1Q9GZU7 261 aa11.35□□□□□ -0.59
SS18-215ENST00000580642 H3BMM0 161 aa11.34□□□□□ -0.59
SS18-215ENST00000580642 IGLL1P15814 213 aa11.34□□□□□ -0.59
SS18-215ENST00000580642 LEPP41159 167 aa11.34□□□□□ -0.59
SS18-215ENST00000580642 SPATA3Q8NHX4 192 aa11.34□□□□□ -0.59
SS18-215ENST00000580642 ANAPC16Q96DE5 110 aa11.34□□□□□ -0.59
SS18-215ENST00000580642 ASCL2Q99929 193 aa11.34□□□□□ -0.59
SS18-215ENST00000580642 OSTCQ9NRP0 149 aa11.34□□□□□ -0.59
SS18-215ENST00000580642 STAB1Q9NY15 2570 aa11.33□□□□□ -0.6
SS18-215ENST00000580642 K7EN84 100 aa11.33□□□□□ -0.6
SS18-215ENST00000580642 ERCC8Q13216 396 aa11.33□□□□□ -0.6
SS18-215ENST00000580642 C15orf54Q8N8G6 183 aa11.33□□□□□ -0.6
SS18-215ENST00000580642 SFRP2Q96HF1 295 aa11.33□□□□□ -0.6
SS18-215ENST00000580642 SGK494Q96LW2 274 aa11.33□□□□□ -0.6
SS18-215ENST00000580642 C19orf73Q9NVV2 129 aa11.33□□□□□ -0.6
SS18-215ENST00000580642 C7orf77A4D0Y5 90 aa11.32□□□□□ -0.6
SS18-215ENST00000580642 F6UB75 175 aa11.32□□□□□ -0.6
SS18-215ENST00000580642 AMBPP02760 352 aa11.32□□□□□ -0.6
SS18-215ENST00000580642 MGST1P10620 155 aaKnown RBP11.32□□□□□ -0.6
SS18-215ENST00000580642 EGFEM1PQ0D2K5 195 aa11.32□□□□□ -0.6
SS18-215ENST00000580642 ACTL10Q5JWF8 245 aa11.32□□□□□ -0.6
SS18-215ENST00000580642 FAM162BQ5T6X4 162 aa11.32□□□□□ -0.6
SS18-215ENST00000580642 Q8TAT8 98 aa11.32□□□□□ -0.6
SS18-215ENST00000580642 C19orf71A6NCJ1 209 aa11.31□□□□□ -0.6
SS18-215ENST00000580642 CXorf65A6NEN9 183 aa11.31□□□□□ -0.6
SS18-215ENST00000580642 PGPEP1LA6NFU8 196 aa11.31□□□□□ -0.6
SS18-215ENST00000580642 FABP5P3A8MUU1 101 aa11.31□□□□□ -0.6
SS18-215ENST00000580642 KLLNB2CW77 178 aa11.31□□□□□ -0.6
SS18-215ENST00000580642 NUTF2P61970 127 aaKnown RBP11.31□□□□□ -0.6
SS18-215ENST00000580642 CT83Q5H943 113 aa11.31□□□□□ -0.6
SS18-215ENST00000580642 GDF5OSQ5U4N7 250 aa11.31□□□□□ -0.6
SS18-215ENST00000580642 STHQ8IWL8 128 aa11.31□□□□□ -0.6
SS18-215ENST00000580642 OR4B1Q8NGF8 309 aa11.31□□□□□ -0.6
SS18-215ENST00000580642 DAZAP1Q96EP5 407 aaKnown RBP11.31□□□□□ -0.6
SS18-215ENST00000580642 ZC2HC1AQ96GY0 325 aa11.31□□□□□ -0.6
SS18-215ENST00000580642 PFN1P07737 140 aaKnown RBP11.3□□□□□ -0.6
SS18-215ENST00000580642 CD7P09564 240 aa11.3□□□□□ -0.6
SS18-215ENST00000580642 ZNF705DP0CH99 300 aaPredicted RBP11.3□□□□□ -0.6
SS18-215ENST00000580642 ZNF705BP0CI00 300 aaPredicted RBP11.3□□□□□ -0.6
SS18-215ENST00000580642 CDKN1BP46527 198 aa11.3□□□□□ -0.6
SS18-215ENST00000580642 ERVFC1-1P60608 527 aa11.3□□□□□ -0.6
SS18-215ENST00000580642 IBA57Q5T440 356 aaKnown RBP11.3□□□□□ -0.6
SS18-215ENST00000580642 AMTNQ6UX39 209 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms