RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 LENEPQ9Y5L5 61 aa7.97□□□□□ -1.13
SS18-213ENST00000579640 HLA-DRB4X5D2U9 266 aa7.97□□□□□ -1.13
SS18-213ENST00000579640 TRAV34A0A0B4J273 112 aa7.96□□□□□ -1.13
SS18-213ENST00000579640 TRBV7-9A0A0J9YWB2 115 aa7.96□□□□□ -1.13
SS18-213ENST00000579640 ZNF727A8MUV8 499 aa7.96□□□□□ -1.13
SS18-213ENST00000579640 F6UB75 175 aa7.96□□□□□ -1.13
SS18-213ENST00000579640 ZNF138P52744 262 aa7.96□□□□□ -1.13
SS18-213ENST00000579640 ACTL10Q5JWF8 245 aa7.96□□□□□ -1.13
SS18-213ENST00000579640 SAPCD1Q5SSQ6 148 aa7.96□□□□□ -1.13
SS18-213ENST00000579640 Q86TA4 180 aa7.96□□□□□ -1.13
SS18-213ENST00000579640 APRG1Q8IVJ8 170 aa7.96□□□□□ -1.13
SS18-213ENST00000579640 SMIM12Q96EX1 92 aa7.96□□□□□ -1.13
SS18-213ENST00000579640 CLUHP3Q96NS8 147 aa7.96□□□□□ -1.13
SS18-213ENST00000579640 ODF3Q96PU9 254 aa7.96□□□□□ -1.13
SS18-213ENST00000579640 NDFIP1Q9BT67 221 aa7.96□□□□□ -1.13
SS18-213ENST00000579640 DERL1Q9BUN8 251 aa7.96□□□□□ -1.13
SS18-213ENST00000579640 AGPAT4-IT1Q9H0P7 198 aa7.96□□□□□ -1.13
SS18-213ENST00000579640 ZNF492Q9P255 531 aa7.96□□□□□ -1.13
SS18-213ENST00000579640 ZFP30Q9Y2G7 519 aa7.96□□□□□ -1.13
SS18-213ENST00000579640 TRAV8-1A0A0A6YYK1 113 aa7.96□□□□□ -1.14
SS18-213ENST00000579640 KNCNA6PVL3 124 aa7.96□□□□□ -1.14
SS18-213ENST00000579640 A8MTW9 85 aa7.96□□□□□ -1.14
SS18-213ENST00000579640 KRBOX1C9JBD0 128 aa7.96□□□□□ -1.14
SS18-213ENST00000579640 G3V4G9 280 aa7.96□□□□□ -1.14
SS18-213ENST00000579640 H3BMM0 161 aa7.96□□□□□ -1.14
SS18-213ENST00000579640 LTAP01374 205 aa7.96□□□□□ -1.14
SS18-213ENST00000579640 GNG4P50150 75 aa7.96□□□□□ -1.14
SS18-213ENST00000579640 DEFB1P60022 68 aa7.96□□□□□ -1.14
SS18-213ENST00000579640 ERCC8Q13216 396 aa7.96□□□□□ -1.14
SS18-213ENST00000579640 LCE2DQ5TA82 110 aaPredicted RBP7.96□□□□□ -1.14
SS18-213ENST00000579640 GDF5OSQ5U4N7 250 aa7.96□□□□□ -1.14
SS18-213ENST00000579640 PRNTQ86SH4 94 aa7.96□□□□□ -1.14
SS18-213ENST00000579640 SEC11CQ9BY50 192 aa7.96□□□□□ -1.14
SS18-213ENST00000579640 LY96Q9Y6Y9 160 aa7.96□□□□□ -1.14
SS18-213ENST00000579640 CMYA5Q8N3K9 4069 aa7.95□□□□□ -1.14
SS18-213ENST00000579640 F8W036 122 aa7.95□□□□□ -1.14
SS18-213ENST00000579640 ZNF705DP0CH99 300 aaPredicted RBP7.95□□□□□ -1.14
SS18-213ENST00000579640 ZNF705BP0CI00 300 aaPredicted RBP7.95□□□□□ -1.14
SS18-213ENST00000579640 PRB4P10163 310 aaPredicted RBP7.95□□□□□ -1.14
SS18-213ENST00000579640 CENPWQ5EE01 88 aa7.95□□□□□ -1.14
SS18-213ENST00000579640 BAGE2Q86Y30 109 aa7.95□□□□□ -1.14
SS18-213ENST00000579640 STHQ8IWL8 128 aa7.95□□□□□ -1.14
SS18-213ENST00000579640 SGK494Q96LW2 274 aa7.95□□□□□ -1.14
SS18-213ENST00000579640 IGF2BP2-AS1Q96M15 143 aa7.95□□□□□ -1.14
SS18-213ENST00000579640 NIPSNAP3BQ9BS92 247 aa7.95□□□□□ -1.14
SS18-213ENST00000579640 NAT8Q9UHE5 227 aa7.95□□□□□ -1.14
SS18-213ENST00000579640 CT45A10P0DMU9 189 aa7.94□□□□□ -1.14
SS18-213ENST00000579640 KRTAP10-11P60412 298 aa7.94□□□□□ -1.14
SS18-213ENST00000579640 ZNF124Q15973 351 aa7.94□□□□□ -1.14
SS18-213ENST00000579640 TMEM183AQ8IXX5 376 aa7.94□□□□□ -1.14
SS18-213ENST00000579640 OR4B1Q8NGF8 309 aa7.94□□□□□ -1.14
SS18-213ENST00000579640 PRR25Q96S07 402 aa7.94□□□□□ -1.14
SS18-213ENST00000579640 TSPOP30536 169 aa7.94□□□□□ -1.14
SS18-213ENST00000579640 LEPP41159 167 aa7.94□□□□□ -1.14
SS18-213ENST00000579640 TMEM241Q24JQ0 296 aa7.94□□□□□ -1.14
SS18-213ENST00000579640 C10orf91Q5T1B1 145 aa7.94□□□□□ -1.14
SS18-213ENST00000579640 COX8CQ7Z4L0 72 aa7.94□□□□□ -1.14
SS18-213ENST00000579640 TRPT1Q86TN4 253 aaKnown RBP7.94□□□□□ -1.14
SS18-213ENST00000579640 Q8N1Y9 231 aa7.94□□□□□ -1.14
SS18-213ENST00000579640 Q8TAT8 98 aa7.94□□□□□ -1.14
SS18-213ENST00000579640 FAM19A4Q96LR4 140 aa7.94□□□□□ -1.14
SS18-213ENST00000579640 BIN3Q9NQY0 253 aa7.94□□□□□ -1.14
SS18-213ENST00000579640 TRBV20OR9-2A0A075B6H5 130 aa7.93□□□□□ -1.14
SS18-213ENST00000579640 CRISP2P16562 243 aa7.93□□□□□ -1.14
SS18-213ENST00000579640 ADCYAP1P18509 176 aa7.93□□□□□ -1.14
SS18-213ENST00000579640 KPRPQ5T749 579 aaPredicted RBP7.93□□□□□ -1.14
SS18-213ENST00000579640 DEFB125Q8N687 156 aa7.93□□□□□ -1.14
SS18-213ENST00000579640 MLST8Q9BVC4 326 aa7.93□□□□□ -1.14
SS18-213ENST00000579640 WFDC10AQ9H1F0 79 aa7.93□□□□□ -1.14
SS18-213ENST00000579640 CARHSP1Q9Y2V2 147 aaKnown RBP7.93□□□□□ -1.14
SS18-213ENST00000579640 AMBPP02760 352 aa7.92□□□□□ -1.14
SS18-213ENST00000579640 NUTF2P61970 127 aaKnown RBP7.92□□□□□ -1.14
SS18-213ENST00000579640 PNRC1Q12796 327 aaPredicted RBP7.92□□□□□ -1.14
SS18-213ENST00000579640 SMUG1Q53HV7 270 aa7.92□□□□□ -1.14
SS18-213ENST00000579640 AMTNQ6UX39 209 aa7.92□□□□□ -1.14
SS18-213ENST00000579640 TVP23CQ96ET8 276 aa7.92□□□□□ -1.14
SS18-213ENST00000579640 SRD5A3Q9H8P0 318 aa7.92□□□□□ -1.14
SS18-213ENST00000579640 SDF2L1Q9HCN8 221 aa7.92□□□□□ -1.14
SS18-213ENST00000579640 IGKV3-20P01619 116 aa7.92□□□□□ -1.14
SS18-213ENST00000579640 IGLV2-8P01709 118 aa7.92□□□□□ -1.14
SS18-213ENST00000579640 CDKN1BP46527 198 aa7.92□□□□□ -1.14
SS18-213ENST00000579640 MORN3Q6PF18 240 aaPredicted RBP7.92□□□□□ -1.14
SS18-213ENST00000579640 LINC01551Q86U37 167 aa7.92□□□□□ -1.14
SS18-213ENST00000579640 OCC1Q8TAD7 63 aa7.92□□□□□ -1.14
SS18-213ENST00000579640 KLLNB2CW77 178 aa7.91□□□□□ -1.14
SS18-213ENST00000579640 GCGP01275 180 aa7.91□□□□□ -1.14
SS18-213ENST00000579640 RPL23P62829 140 aaKnown RBP7.91□□□□□ -1.14
SS18-213ENST00000579640 ZFAND2AQ8N6M9 145 aa7.91□□□□□ -1.14
SS18-213ENST00000579640 C8orf49Q96NF6 230 aa7.91□□□□□ -1.14
SS18-213ENST00000579640 AGRNO00468 2067 aa7.91□□□□□ -1.14
SS18-213ENST00000579640 RBMY1BA6NDE4 496 aaKnown RBP7.9□□□□□ -1.14
SS18-213ENST00000579640 RBMY1EA6NEQ0 496 aaKnown RBP7.9□□□□□ -1.14
SS18-213ENST00000579640 PGPEP1LA6NFU8 196 aa7.9□□□□□ -1.14
SS18-213ENST00000579640 A8MZ25 164 aa7.9□□□□□ -1.14
SS18-213ENST00000579640 GPX1P07203 203 aa7.9□□□□□ -1.14
SS18-213ENST00000579640 RBMY1DP0C7P1 496 aaKnown RBP7.9□□□□□ -1.14
SS18-213ENST00000579640 MGST1P10620 155 aaKnown RBP7.9□□□□□ -1.14
SS18-213ENST00000579640 ADIRFQ15847 76 aa7.9□□□□□ -1.14
SS18-213ENST00000579640 NHLRC2Q8NBF2 726 aa7.9□□□□□ -1.14
SS18-213ENST00000579640 ASCL2Q99929 193 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms