RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 ODF3Q96PU9 254 aa14.58□□□□□ -0.08
VPS53-216ENST00000574029 MED28Q9H204 178 aa14.58□□□□□ -0.08
VPS53-216ENST00000574029 SNURFLB1AK76 121 aa14.57□□□□□ -0.08
VPS53-216ENST00000574029 H3BQ15 152 aa14.57□□□□□ -0.08
VPS53-216ENST00000574029 CT45A10P0DMU9 189 aa14.57□□□□□ -0.08
VPS53-216ENST00000574029 RAB31Q13636 194 aa14.57□□□□□ -0.08
VPS53-216ENST00000574029 C10orf113Q5VZT2 155 aa14.57□□□□□ -0.08
VPS53-216ENST00000574029 MRPS16Q9Y3D3 137 aaKnown RBP14.57□□□□□ -0.08
VPS53-216ENST00000574029 NPIPB6E9PJ23 425 aa14.56□□□□□ -0.08
VPS53-216ENST00000574029 BTF3P20290 206 aaKnown RBP14.56□□□□□ -0.08
VPS53-216ENST00000574029 BAXQ07812 192 aa14.56□□□□□ -0.08
VPS53-216ENST00000574029 DAZ2Q13117 558 aaKnown RBP14.56□□□□□ -0.08
VPS53-216ENST00000574029 TRAV12-3A0A0B4J271 114 aa14.55□□□□□ -0.08
VPS53-216ENST00000574029 LEPP41159 167 aa14.55□□□□□ -0.08
VPS53-216ENST00000574029 CAMLGP49069 296 aa14.55□□□□□ -0.08
VPS53-216ENST00000574029 KRTAP10-2P60368 255 aa14.55□□□□□ -0.08
VPS53-216ENST00000574029 PYGO2Q9BRQ0 406 aa14.55□□□□□ -0.08
VPS53-216ENST00000574029 DNAJC4Q9NNZ3 241 aa14.55□□□□□ -0.08
VPS53-216ENST00000574029 J3KRW8 73 aa14.54□□□□□ -0.08
VPS53-216ENST00000574029 MPDU1O75352 247 aa14.54□□□□□ -0.08
VPS53-216ENST00000574029 GUK1Q16774 197 aa14.54□□□□□ -0.08
VPS53-216ENST00000574029 OR5C1Q8NGR4 320 aa14.54□□□□□ -0.08
VPS53-216ENST00000574029 ASB13Q8WXK3 278 aa14.54□□□□□ -0.08
VPS53-216ENST00000574029 TMPRSS5Q9H3S3 457 aa14.54□□□□□ -0.08
VPS53-216ENST00000574029 APOBP04114 4563 aaKnown RBP14.53□□□□□ -0.08
VPS53-216ENST00000574029 RPL29P47914 159 aaKnown RBP14.53□□□□□ -0.08
VPS53-216ENST00000574029 Q6ZRG5 221 aa14.53□□□□□ -0.08
VPS53-216ENST00000574029 Q6ZTI0 123 aa14.53□□□□□ -0.08
VPS53-216ENST00000574029 TRAV5A0A0B4J249 113 aa14.52□□□□□ -0.09
VPS53-216ENST00000574029 UBE2L5PA0A1B0GUS4 154 aa14.52□□□□□ -0.09
VPS53-216ENST00000574029 VSIG2Q96IQ7 327 aa14.52□□□□□ -0.09
VPS53-216ENST00000574029 C18orf15Q96N68 181 aa14.52□□□□□ -0.09
VPS53-216ENST00000574029 SCRT2Q9NQ03 307 aa14.52□□□□□ -0.09
VPS53-216ENST00000574029 ZNF586Q9NXT0 402 aa14.52□□□□□ -0.09
VPS53-216ENST00000574029 MBD2Q9UBB5 411 aa14.52□□□□□ -0.09
VPS53-216ENST00000574029 A0A096LPF7 62 aa14.51□□□□□ -0.09
VPS53-216ENST00000574029 ZNF253O75346 499 aa14.51□□□□□ -0.09
VPS53-216ENST00000574029 RPL12P30050 165 aaKnown RBP14.51□□□□□ -0.09
VPS53-216ENST00000574029 MIC13Q5XKP0 118 aa14.51□□□□□ -0.09
VPS53-216ENST00000574029 OR1L4Q8NGR5 311 aa14.51□□□□□ -0.09
VPS53-216ENST00000574029 HSPB11Q9Y547 144 aa14.51□□□□□ -0.09
VPS53-216ENST00000574029 SLC25A5P05141 298 aaKnown RBP14.5□□□□□ -0.09
VPS53-216ENST00000574029 FGF7P21781 194 aa14.5□□□□□ -0.09
VPS53-216ENST00000574029 C11orf72Q8NBR9 251 aa14.5□□□□□ -0.09
VPS53-216ENST00000574029 THAP6Q8TBB0 222 aa14.5□□□□□ -0.09
VPS53-216ENST00000574029 MRPL53Q96EL3 112 aaKnown RBP14.5□□□□□ -0.09
VPS53-216ENST00000574029 GIPP09681 153 aaPredicted RBP14.49□□□□□ -0.09
VPS53-216ENST00000574029 ZNF680Q8NEM1 530 aa14.49□□□□□ -0.09
VPS53-216ENST00000574029 PFDN5Q99471 154 aa14.49□□□□□ -0.09
VPS53-216ENST00000574029 LINC00467Q9BRT7 94 aa14.49□□□□□ -0.09
VPS53-216ENST00000574029 GSN-AS1Q9NRJ2 163 aa14.49□□□□□ -0.09
VPS53-216ENST00000574029 SLC39A9Q9NUM3 307 aa14.49□□□□□ -0.09
VPS53-216ENST00000574029 C7orf71A4D174 169 aa14.48□□□□□ -0.09
VPS53-216ENST00000574029 FAM19A4Q96LR4 140 aa14.48□□□□□ -0.09
VPS53-216ENST00000574029 ATP5SQ99766 215 aa14.48□□□□□ -0.09
VPS53-216ENST00000574029 NPCDR1Q9BY65 106 aa14.48□□□□□ -0.09
VPS53-216ENST00000574029 WDR61Q9GZS3 305 aaKnown RBP14.48□□□□□ -0.09
VPS53-216ENST00000574029 TRBV19A0A075B6N1 114 aa14.47□□□□□ -0.09
VPS53-216ENST00000574029 TRGV2A0A075B6R0 118 aa14.47□□□□□ -0.09
VPS53-216ENST00000574029 KLLNB2CW77 178 aa14.47□□□□□ -0.09
VPS53-216ENST00000574029 M0R3E3 92 aa14.47□□□□□ -0.09
VPS53-216ENST00000574029 ZNF324O75467 553 aaPredicted RBP14.47□□□□□ -0.09
VPS53-216ENST00000574029 LINC00315P59091 139 aa14.47□□□□□ -0.09
VPS53-216ENST00000574029 ANXA2RQ3ZCQ2 193 aa14.47□□□□□ -0.09
VPS53-216ENST00000574029 Q6ZRN7 208 aaPredicted RBP14.47□□□□□ -0.09
VPS53-216ENST00000574029 DNAH5Q8TE73 4624 aa14.46□□□□□ -0.09
VPS53-216ENST00000574029 ERCC8Q13216 396 aa14.46□□□□□ -0.09
VPS53-216ENST00000574029 EIF4E3Q8N5X7 224 aaKnown RBP14.46□□□□□ -0.09
VPS53-216ENST00000574029 LINC00477Q96M19 166 aa14.46□□□□□ -0.09
VPS53-216ENST00000574029 TMEM14CQ9P0S9 112 aa14.46□□□□□ -0.09
VPS53-216ENST00000574029 SPINK4O60575 86 aa14.45□□□□□ -0.1
VPS53-216ENST00000574029 NDUFB4O95168 129 aa14.45□□□□□ -0.1
VPS53-216ENST00000574029 CD300CQ08708 224 aa14.45□□□□□ -0.1
VPS53-216ENST00000574029 BTN1A1Q13410 526 aa14.45□□□□□ -0.1
VPS53-216ENST00000574029 Q5BKY6 102 aa14.45□□□□□ -0.1
VPS53-216ENST00000574029 AGPAT4-IT1Q9H0P7 198 aa14.45□□□□□ -0.1
VPS53-216ENST00000574029 FUT9Q9Y231 359 aa14.45□□□□□ -0.1
VPS53-216ENST00000574029 PRELID1Q9Y255 219 aa14.45□□□□□ -0.1
VPS53-216ENST00000574029 TRGV1A0A0A0MS02 117 aa14.44□□□□□ -0.1
VPS53-216ENST00000574029 SIVA1O15304 175 aa14.44□□□□□ -0.1
VPS53-216ENST00000574029 AQP10Q96PS8 301 aa14.44□□□□□ -0.1
VPS53-216ENST00000574029 KCNIP2Q9NS61 270 aa14.44□□□□□ -0.1
VPS53-216ENST00000574029 KLF12Q9Y4X4 402 aa14.44□□□□□ -0.1
VPS53-216ENST00000574029 HIST1H1EP10412 219 aaKnown RBP14.43□□□□□ -0.1
VPS53-216ENST00000574029 TCL1AP56279 114 aa14.43□□□□□ -0.1
VPS53-216ENST00000574029 PDE6HQ13956 83 aa14.43□□□□□ -0.1
VPS53-216ENST00000574029 WFDC1Q9HC57 220 aa14.43□□□□□ -0.1
VPS53-216ENST00000574029 C17orf112F2Z3M2 114 aa14.42□□□□□ -0.1
VPS53-216ENST00000574029 IFNA5P01569 189 aa14.42□□□□□ -0.1
VPS53-216ENST00000574029 CRISP2P16562 243 aa14.42□□□□□ -0.1
VPS53-216ENST00000574029 RNASE4P34096 147 aaKnown RBP14.42□□□□□ -0.1
VPS53-216ENST00000574029 IBA57Q5T440 356 aaKnown RBP14.42□□□□□ -0.1
VPS53-216ENST00000574029 C9orf47Q6ZRZ4 202 aa14.42□□□□□ -0.1
VPS53-216ENST00000574029 TIMM9Q9Y5J7 89 aa14.42□□□□□ -0.1
VPS53-216ENST00000574029 NMBP08949 121 aa14.41□□□□□ -0.1
VPS53-216ENST00000574029 PYYP10082 97 aa14.41□□□□□ -0.1
VPS53-216ENST00000574029 EXOC3-AS1Q8N2X6 119 aa14.41□□□□□ -0.1
VPS53-216ENST00000574029 SCGB1C1Q8TD33 95 aa14.41□□□□□ -0.1
VPS53-216ENST00000574029 ST6GAL2Q96JF0 529 aa14.41□□□□□ -0.1
VPS53-216ENST00000574029 SMIM3Q9BZL3 60 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms