RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 LINC00477Q96M19 166 aa10.24□□□□□ -0.77
CCDC40-209ENST00000573474 MLST8Q9BVC4 326 aa10.24□□□□□ -0.77
CCDC40-209ENST00000573474 IZUMO1RA6ND01 250 aa10.23□□□□□ -0.77
CCDC40-209ENST00000573474 K7EN84 100 aa10.23□□□□□ -0.77
CCDC40-209ENST00000573474 GCGP01275 180 aa10.23□□□□□ -0.77
CCDC40-209ENST00000573474 MGST1P10620 155 aaKnown RBP10.23□□□□□ -0.77
CCDC40-209ENST00000573474 INSL3P51460 131 aa10.23□□□□□ -0.77
CCDC40-209ENST00000573474 SAPCD1Q5SSQ6 148 aa10.23□□□□□ -0.77
CCDC40-209ENST00000573474 TMEM78Q5T7P6 136 aa10.23□□□□□ -0.77
CCDC40-209ENST00000573474 TMEM183AQ8IXX5 376 aa10.23□□□□□ -0.77
CCDC40-209ENST00000573474 WFDC9Q8NEX5 89 aa10.23□□□□□ -0.77
CCDC40-209ENST00000573474 ISOC2Q96AB3 205 aa10.23□□□□□ -0.77
CCDC40-209ENST00000573474 MCRIP2Q9BUT9 160 aaKnown RBP10.23□□□□□ -0.77
CCDC40-209ENST00000573474 AGPAT4-IT1Q9H0P7 198 aa10.23□□□□□ -0.77
CCDC40-209ENST00000573474 RPS10P5Q9NQ39 176 aa10.23□□□□□ -0.77
CCDC40-209ENST00000573474 BIN3Q9NQY0 253 aa10.23□□□□□ -0.77
CCDC40-209ENST00000573474 PPP1R14DQ9NXH3 145 aa10.23□□□□□ -0.77
CCDC40-209ENST00000573474 ZNF256Q9Y2P7 627 aaPredicted RBP10.23□□□□□ -0.77
CCDC40-209ENST00000573474 NPIPB6E9PJ23 425 aa10.22□□□□□ -0.77
CCDC40-209ENST00000573474 MT-ND4LP03901 98 aa10.22□□□□□ -0.77
CCDC40-209ENST00000573474 CD33P20138 364 aa10.22□□□□□ -0.77
CCDC40-209ENST00000573474 ZNF138P52744 262 aa10.22□□□□□ -0.77
CCDC40-209ENST00000573474 C9orf66Q5T8R8 295 aa10.22□□□□□ -0.77
CCDC40-209ENST00000573474 NHLRC2Q8NBF2 726 aa10.22□□□□□ -0.77
CCDC40-209ENST00000573474 PRR25Q96S07 402 aa10.22□□□□□ -0.77
CCDC40-209ENST00000573474 NDFIP1Q9BT67 221 aa10.22□□□□□ -0.77
CCDC40-209ENST00000573474 A0A087WWC5 75 aa10.21□□□□□ -0.77
CCDC40-209ENST00000573474 F6UB75 175 aa10.21□□□□□ -0.77
CCDC40-209ENST00000573474 ZNF705DP0CH99 300 aaPredicted RBP10.21□□□□□ -0.77
CCDC40-209ENST00000573474 ZNF705BP0CI00 300 aaPredicted RBP10.21□□□□□ -0.77
CCDC40-209ENST00000573474 CMC4P56277 68 aaPredicted RBP10.21□□□□□ -0.77
CCDC40-209ENST00000573474 DEFB1P60022 68 aa10.21□□□□□ -0.77
CCDC40-209ENST00000573474 HIST1H1AQ02539 215 aaPredicted RBP10.21□□□□□ -0.77
CCDC40-209ENST00000573474 OR5I1Q13606 314 aa10.21□□□□□ -0.77
CCDC40-209ENST00000573474 EBLN2Q6P2I7 272 aa10.21□□□□□ -0.77
CCDC40-209ENST00000573474 FOXI2Q6ZQN5 318 aa10.21□□□□□ -0.77
CCDC40-209ENST00000573474 SFRP2Q96HF1 295 aa10.21□□□□□ -0.77
CCDC40-209ENST00000573474 CTDSP1Q9GZU7 261 aa10.21□□□□□ -0.77
CCDC40-209ENST00000573474 ZNF492Q9P255 531 aa10.21□□□□□ -0.77
CCDC40-209ENST00000573474 LENEPQ9Y5L5 61 aa10.21□□□□□ -0.77
CCDC40-209ENST00000573474 A0A0J9YX75 114 aa10.2□□□□□ -0.78
CCDC40-209ENST00000573474 PPP1R2P9O14990 202 aa10.2□□□□□ -0.78
CCDC40-209ENST00000573474 SCO1O75880 301 aa10.2□□□□□ -0.78
CCDC40-209ENST00000573474 DUSP14O95147 198 aaKnown RBP10.2□□□□□ -0.78
CCDC40-209ENST00000573474 DEFB131AP59861 70 aa10.2□□□□□ -0.78
CCDC40-209ENST00000573474 RNF212Q495C1 297 aa10.2□□□□□ -0.78
CCDC40-209ENST00000573474 COX8CQ7Z4L0 72 aa10.2□□□□□ -0.78
CCDC40-209ENST00000573474 Q8TAT8 98 aa10.2□□□□□ -0.78
CCDC40-209ENST00000573474 ANAPC16Q96DE5 110 aa10.2□□□□□ -0.78
CCDC40-209ENST00000573474 ASCL2Q99929 193 aa10.2□□□□□ -0.78
CCDC40-209ENST00000573474 SAV1Q9H4B6 383 aaPredicted RBP10.2□□□□□ -0.78
CCDC40-209ENST00000573474 MAP6D1Q9H9H5 199 aa10.2□□□□□ -0.78
CCDC40-209ENST00000573474 CT45A10P0DMU9 189 aa10.19□□□□□ -0.78
CCDC40-209ENST00000573474 ERVFC1-1P60608 527 aa10.19□□□□□ -0.78
CCDC40-209ENST00000573474 SMUG1Q53HV7 270 aa10.19□□□□□ -0.78
CCDC40-209ENST00000573474 FAM231DQ6ZW35 169 aa10.19□□□□□ -0.78
CCDC40-209ENST00000573474 C15orf54Q8N8G6 183 aa10.19□□□□□ -0.78
CCDC40-209ENST00000573474 OR10G8Q8NGN5 311 aa10.19□□□□□ -0.78
CCDC40-209ENST00000573474 SPATA3Q8NHX4 192 aa10.19□□□□□ -0.78
CCDC40-209ENST00000573474 ZC2HC1AQ96GY0 325 aa10.19□□□□□ -0.78
CCDC40-209ENST00000573474 C8orf49Q96NF6 230 aa10.19□□□□□ -0.78
CCDC40-209ENST00000573474 GPR61Q9BZJ8 451 aa10.19□□□□□ -0.78
CCDC40-209ENST00000573474 OSTCQ9NRP0 149 aa10.19□□□□□ -0.78
CCDC40-209ENST00000573474 TMEM242Q9NWH2 141 aa10.19□□□□□ -0.78
CCDC40-209ENST00000573474 TRBV7-9A0A0J9YWB2 115 aa10.18□□□□□ -0.78
CCDC40-209ENST00000573474 H7BYZ3 331 aa10.18□□□□□ -0.78
CCDC40-209ENST00000573474 BEAN1Q3B7T3 259 aa10.18□□□□□ -0.78
CCDC40-209ENST00000573474 GDF5OSQ5U4N7 250 aa10.18□□□□□ -0.78
CCDC40-209ENST00000573474 PRR27Q6MZM9 219 aa10.18□□□□□ -0.78
CCDC40-209ENST00000573474 DAZAP1Q96EP5 407 aaKnown RBP10.18□□□□□ -0.78
CCDC40-209ENST00000573474 SMCO4Q9NRQ5 59 aa10.18□□□□□ -0.78
CCDC40-209ENST00000573474 OR11H12B2RN74 326 aa10.17□□□□□ -0.78
CCDC40-209ENST00000573474 ODF3L2Q3SX64 289 aa10.17□□□□□ -0.78
CCDC40-209ENST00000573474 IBA57Q5T440 356 aaKnown RBP10.17□□□□□ -0.78
CCDC40-209ENST00000573474 LURAP1LQ8IV03 231 aa10.17□□□□□ -0.78
CCDC40-209ENST00000573474 NUDT10Q8NFP7 164 aa10.17□□□□□ -0.78
CCDC40-209ENST00000573474 NUDT11Q96G61 164 aa10.17□□□□□ -0.78
CCDC40-209ENST00000573474 FAM19A4Q96LR4 140 aa10.17□□□□□ -0.78
CCDC40-209ENST00000573474 ODF3Q96PU9 254 aa10.17□□□□□ -0.78
CCDC40-209ENST00000573474 FAM110AQ9BQ89 295 aa10.17□□□□□ -0.78
CCDC40-209ENST00000573474 RNASE7Q9H1E1 156 aaKnown RBP10.17□□□□□ -0.78
CCDC40-209ENST00000573474 C19orf71A6NCJ1 209 aa10.16□□□□□ -0.78
CCDC40-209ENST00000573474 CXorf65A6NEN9 183 aa10.16□□□□□ -0.78
CCDC40-209ENST00000573474 KNCNA6PVL3 124 aa10.16□□□□□ -0.78
CCDC40-209ENST00000573474 GATCO43716 136 aaKnown RBP10.16□□□□□ -0.78
CCDC40-209ENST00000573474 HLA-DRB4P13762 266 aa10.16□□□□□ -0.78
CCDC40-209ENST00000573474 CRIP1P50238 77 aa10.16□□□□□ -0.78
CCDC40-209ENST00000573474 BTN1A1Q13410 526 aa10.16□□□□□ -0.78
CCDC40-209ENST00000573474 ACTL10Q5JWF8 245 aa10.16□□□□□ -0.78
CCDC40-209ENST00000573474 FAM162BQ5T6X4 162 aa10.16□□□□□ -0.78
CCDC40-209ENST00000573474 LINC00322Q6ZN03 302 aaPredicted RBP10.16□□□□□ -0.78
CCDC40-209ENST00000573474 TUBA4BQ9H853 241 aa10.16□□□□□ -0.78
CCDC40-209ENST00000573474 HLA-DRB4X5D2U9 266 aa10.16□□□□□ -0.78
CCDC40-209ENST00000573474 A8MTW9 85 aa10.15□□□□□ -0.78
CCDC40-209ENST00000573474 H3BMM0 161 aa10.15□□□□□ -0.78
CCDC40-209ENST00000573474 P01737 135 aa10.15□□□□□ -0.78
CCDC40-209ENST00000573474 IGLL1P15814 213 aa10.15□□□□□ -0.78
CCDC40-209ENST00000573474 CRISP2P16562 243 aa10.15□□□□□ -0.78
CCDC40-209ENST00000573474 LEPP41159 167 aa10.15□□□□□ -0.78
CCDC40-209ENST00000573474 TMEM88Q6PEY1 159 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms