RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 NAP1L6A6NFF2 107 aa11.94□□□□□ -0.5
CLK3-221ENST00000568139 MPDU1O75352 247 aa11.94□□□□□ -0.5
CLK3-221ENST00000568139 CRISP2P16562 243 aa11.94□□□□□ -0.5
CLK3-221ENST00000568139 CRYBA4P53673 196 aa11.94□□□□□ -0.5
CLK3-221ENST00000568139 RAB31Q13636 194 aa11.94□□□□□ -0.5
CLK3-221ENST00000568139 ICAM4Q14773 271 aa11.94□□□□□ -0.5
CLK3-221ENST00000568139 MRPL23Q16540 153 aaKnown RBP11.94□□□□□ -0.5
CLK3-221ENST00000568139 AGPAT4-IT1Q9H0P7 198 aa11.94□□□□□ -0.5
CLK3-221ENST00000568139 PRELID1Q9Y255 219 aa11.94□□□□□ -0.5
CLK3-221ENST00000568139 VPS13BQ7Z7G8 4022 aa11.94□□□□□ -0.5
CLK3-221ENST00000568139 NDUFB4O95168 129 aa11.93□□□□□ -0.5
CLK3-221ENST00000568139 IGHV3-53P01767 116 aa11.93□□□□□ -0.5
CLK3-221ENST00000568139 S100A5P33763 92 aa11.93□□□□□ -0.5
CLK3-221ENST00000568139 RNASE4P34096 147 aaKnown RBP11.93□□□□□ -0.5
CLK3-221ENST00000568139 FHL2Q14192 279 aa11.93□□□□□ -0.5
CLK3-221ENST00000568139 PFDN5Q99471 154 aa11.93□□□□□ -0.5
CLK3-221ENST00000568139 VGLL1Q99990 258 aa11.93□□□□□ -0.5
CLK3-221ENST00000568139 TP53TG3Q9ULZ0 132 aa11.93□□□□□ -0.5
CLK3-221ENST00000568139 HHLA3Q9XRX5 114 aa11.93□□□□□ -0.5
CLK3-221ENST00000568139 LY96Q9Y6Y9 160 aa11.93□□□□□ -0.5
CLK3-221ENST00000568139 K7EP13 123 aa11.92□□□□□ -0.5
CLK3-221ENST00000568139 PRAF2O60831 178 aa11.92□□□□□ -0.5
CLK3-221ENST00000568139 SMR3BP02814 79 aaPredicted RBP11.92□□□□□ -0.5
CLK3-221ENST00000568139 NMBP08949 121 aa11.92□□□□□ -0.5
CLK3-221ENST00000568139 C9orf47Q6ZRZ4 202 aa11.92□□□□□ -0.5
CLK3-221ENST00000568139 NEGR1Q7Z3B1 354 aa11.92□□□□□ -0.5
CLK3-221ENST00000568139 C12orf45Q8N5I9 185 aaPredicted RBP11.92□□□□□ -0.5
CLK3-221ENST00000568139 MITD1Q8WV92 249 aa11.92□□□□□ -0.5
CLK3-221ENST00000568139 SRRQ9GZT4 340 aa11.92□□□□□ -0.5
CLK3-221ENST00000568139 MRPL16Q9NX20 251 aaKnown RBP11.92□□□□□ -0.5
CLK3-221ENST00000568139 MSRB1Q9NZV6 116 aa11.92□□□□□ -0.5
CLK3-221ENST00000568139 TMEM14CQ9P0S9 112 aa11.92□□□□□ -0.5
CLK3-221ENST00000568139 MDFICQ9P1T7 246 aa11.92□□□□□ -0.5
CLK3-221ENST00000568139 WDR83OSQ9Y284 106 aa11.92□□□□□ -0.5
CLK3-221ENST00000568139 MYCBP2O75592 4640 aa11.91□□□□□ -0.5
CLK3-221ENST00000568139 GPX1P07203 203 aa11.91□□□□□ -0.5
CLK3-221ENST00000568139 HIST1H1EP10412 219 aaKnown RBP11.91□□□□□ -0.5
CLK3-221ENST00000568139 GCSHP23434 173 aa11.91□□□□□ -0.5
CLK3-221ENST00000568139 RPL29P47914 159 aaKnown RBP11.91□□□□□ -0.5
CLK3-221ENST00000568139 PDE6HQ13956 83 aa11.91□□□□□ -0.5
CLK3-221ENST00000568139 ZFAND2AQ8N6M9 145 aa11.91□□□□□ -0.5
CLK3-221ENST00000568139 C8orf49Q96NF6 230 aa11.91□□□□□ -0.5
CLK3-221ENST00000568139 L7N2F9 121 aa11.9□□□□□ -0.5
CLK3-221ENST00000568139 RGS13O14921 159 aa11.9□□□□□ -0.5
CLK3-221ENST00000568139 VAMP2P63027 116 aa11.9□□□□□ -0.5
CLK3-221ENST00000568139 BAK1Q16611 211 aa11.9□□□□□ -0.5
CLK3-221ENST00000568139 VWC2Q2TAL6 325 aa11.9□□□□□ -0.5
CLK3-221ENST00000568139 MRPL32Q9BYC8 188 aaKnown RBP11.9□□□□□ -0.5
CLK3-221ENST00000568139 SLC39A9Q9NUM3 307 aa11.9□□□□□ -0.5
CLK3-221ENST00000568139 IGHV1OR15-1A0A075B7D0 117 aa11.89□□□□□ -0.51
CLK3-221ENST00000568139 CST7O76096 145 aa11.89□□□□□ -0.51
CLK3-221ENST00000568139 BTCP35070 178 aa11.89□□□□□ -0.51
CLK3-221ENST00000568139 PRR9Q5T870 116 aa11.89□□□□□ -0.51
CLK3-221ENST00000568139 Q6ZQT7 251 aa11.89□□□□□ -0.51
CLK3-221ENST00000568139 EXOC3-AS1Q8N2X6 119 aa11.89□□□□□ -0.51
CLK3-221ENST00000568139 CHAC2Q8WUX2 184 aa11.89□□□□□ -0.51
CLK3-221ENST00000568139 C20orf85Q9H1P6 137 aa11.89□□□□□ -0.51
CLK3-221ENST00000568139 C11orf1Q9H5F2 150 aa11.89□□□□□ -0.51
CLK3-221ENST00000568139 UQCC1Q9NVA1 299 aa11.89□□□□□ -0.51
CLK3-221ENST00000568139 TIMM9Q9Y5J7 89 aa11.89□□□□□ -0.51
CLK3-221ENST00000568139 SRRM2Q9UQ35 2752 aaKnown RBP11.89□□□□□ -0.51
CLK3-221ENST00000568139 FAM229AH3BQW9 127 aa11.88□□□□□ -0.51
CLK3-221ENST00000568139 K7EQD1 137 aa11.88□□□□□ -0.51
CLK3-221ENST00000568139 EVI2AP22794 236 aa11.88□□□□□ -0.51
CLK3-221ENST00000568139 INPP1P49441 399 aa11.88□□□□□ -0.51
CLK3-221ENST00000568139 BCAP31P51572 246 aa11.88□□□□□ -0.51
CLK3-221ENST00000568139 SPANXN2Q5MJ10 180 aa11.88□□□□□ -0.51
CLK3-221ENST00000568139 WFDC10BQ8IUB3 73 aa11.88□□□□□ -0.51
CLK3-221ENST00000568139 IQCF2Q8IXL9 164 aa11.88□□□□□ -0.51
CLK3-221ENST00000568139 IGKV2-40A0A087WW87 121 aaPredicted RBP11.87□□□□□ -0.51
CLK3-221ENST00000568139 FAM24AA6NFZ4 105 aa11.87□□□□□ -0.51
CLK3-221ENST00000568139 E5RGE8 158 aa11.87□□□□□ -0.51
CLK3-221ENST00000568139 IGKV2D-40P01614 121 aaPredicted RBP11.87□□□□□ -0.51
CLK3-221ENST00000568139 PYYP10082 97 aa11.87□□□□□ -0.51
CLK3-221ENST00000568139 CAV2P51636 162 aa11.87□□□□□ -0.51
CLK3-221ENST00000568139 TMEM78Q5T7P6 136 aa11.87□□□□□ -0.51
CLK3-221ENST00000568139 TRIQKQ629K1 86 aa11.87□□□□□ -0.51
CLK3-221ENST00000568139 ARPC5LQ9BPX5 153 aa11.87□□□□□ -0.51
CLK3-221ENST00000568139 ZNF492Q9P255 531 aa11.87□□□□□ -0.51
CLK3-221ENST00000568139 LSM5Q9Y4Y9 91 aaKnown RBP11.87□□□□□ -0.51
CLK3-221ENST00000568139 TRGV4A0A0C4DH28 118 aa11.86□□□□□ -0.51
CLK3-221ENST00000568139 CCSO14618 274 aa11.86□□□□□ -0.51
CLK3-221ENST00000568139 SRIP30626 198 aa11.86□□□□□ -0.51
CLK3-221ENST00000568139 ZNF415Q09FC8 603 aa11.86□□□□□ -0.51
CLK3-221ENST00000568139 BLNKQ8WV28 456 aa11.86□□□□□ -0.51
CLK3-221ENST00000568139 AAMDCQ9H7C9 122 aa11.86□□□□□ -0.51
CLK3-221ENST00000568139 UBE2L5PA0A1B0GUS4 154 aa11.85□□□□□ -0.51
CLK3-221ENST00000568139 S100A11P31949 105 aa11.85□□□□□ -0.51
CLK3-221ENST00000568139 BAXQ07812 192 aa11.85□□□□□ -0.51
CLK3-221ENST00000568139 ZNF846Q147U1 533 aa11.85□□□□□ -0.51
CLK3-221ENST00000568139 CNPY1Q3B7I2 92 aa11.85□□□□□ -0.51
CLK3-221ENST00000568139 Q6ZSN1 163 aa11.85□□□□□ -0.51
CLK3-221ENST00000568139 OR10G4Q8NGN3 311 aa11.85□□□□□ -0.51
CLK3-221ENST00000568139 ZNF479Q96JC4 524 aa11.85□□□□□ -0.51
CLK3-221ENST00000568139 SDHCQ99643 169 aaPredicted RBP11.85□□□□□ -0.51
CLK3-221ENST00000568139 TMEM70Q9BUB7 260 aa11.85□□□□□ -0.51
CLK3-221ENST00000568139 TRBV7-9A0A0J9YWB2 115 aa11.84□□□□□ -0.51
CLK3-221ENST00000568139 CENPXA8MT69 81 aa11.84□□□□□ -0.51
CLK3-221ENST00000568139 ORM1P02763 201 aa11.84□□□□□ -0.51
CLK3-221ENST00000568139 SFTA3P0C7M3 94 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 143.3 ms