RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 MAPK1IP1LQ8NDC0 245 aa15.55■□□□□ 0.08
CLN3-230ENST00000568076 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP15.54■□□□□ 0.08
CLN3-230ENST00000568076 LCNL1Q6ZST4 164 aa15.54■□□□□ 0.08
CLN3-230ENST00000568076 RBAKDNA6NC62 111 aa15.53■□□□□ 0.08
CLN3-230ENST00000568076 IGHV3-11P01762 117 aa15.53■□□□□ 0.08
CLN3-230ENST00000568076 GLMPQ8WWB7 406 aa15.53■□□□□ 0.08
CLN3-230ENST00000568076 USMG5Q96IX5 58 aa15.53■□□□□ 0.08
CLN3-230ENST00000568076 PSMG3-AS1Q96PY0 264 aa15.53■□□□□ 0.08
CLN3-230ENST00000568076 FAM208BQ5VWN6 2430 aa15.53■□□□□ 0.08
CLN3-230ENST00000568076 A0A1B0GW15 77 aa15.53■□□□□ 0.08
CLN3-230ENST00000568076 NDUFAF3Q9BU61 184 aa15.53■□□□□ 0.08
CLN3-230ENST00000568076 LRRK2Q5S007 2527 aa15.52■□□□□ 0.08
CLN3-230ENST00000568076 M0R2Z0 102 aa15.52■□□□□ 0.07
CLN3-230ENST00000568076 SMAD7O15105 426 aaKnown RBP15.52■□□□□ 0.07
CLN3-230ENST00000568076 IGLV1-40P01703 118 aa15.52■□□□□ 0.07
CLN3-230ENST00000568076 PF4V1P10720 104 aa15.52■□□□□ 0.07
CLN3-230ENST00000568076 BMI1P35226 326 aa15.52■□□□□ 0.07
CLN3-230ENST00000568076 KRTAP10-9P60411 292 aa15.52■□□□□ 0.07
CLN3-230ENST00000568076 DEFB112Q30KQ8 113 aa15.52■□□□□ 0.07
CLN3-230ENST00000568076 NDUFA4O00483 81 aa15.51■□□□□ 0.07
CLN3-230ENST00000568076 CFHR3Q02985 330 aa15.51■□□□□ 0.07
CLN3-230ENST00000568076 IL17RELQ6ZVW7 336 aa15.51■□□□□ 0.07
CLN3-230ENST00000568076 TMEM213A2RRL7 107 aa15.51■□□□□ 0.07
CLN3-230ENST00000568076 FAM181BA6NEQ2 426 aa15.51■□□□□ 0.07
CLN3-230ENST00000568076 IGHV4-59P01825 116 aa15.51■□□□□ 0.07
CLN3-230ENST00000568076 ZNF493Q6ZR52 646 aa15.51■□□□□ 0.07
CLN3-230ENST00000568076 BORCS7Q96B45 105 aa15.51■□□□□ 0.07
CLN3-230ENST00000568076 AGPAT4-IT1Q9H0P7 198 aa15.51■□□□□ 0.07
CLN3-230ENST00000568076 POLQO75417 2590 aa15.51■□□□□ 0.07
CLN3-230ENST00000568076 ANKRD17O75179 2603 aaKnown RBP15.5■□□□□ 0.07
CLN3-230ENST00000568076 SSTP61278 116 aa15.5■□□□□ 0.07
CLN3-230ENST00000568076 PMCHL1Q16048 86 aa15.5■□□□□ 0.07
CLN3-230ENST00000568076 EBLN2Q6P2I7 272 aa15.5■□□□□ 0.07
CLN3-230ENST00000568076 MRPL53Q96EL3 112 aaKnown RBP15.5■□□□□ 0.07
CLN3-230ENST00000568076 MUC21A0A0G2JKD1 596 aa15.49■□□□□ 0.07
CLN3-230ENST00000568076 MUC21A0A140T8X8 626 aa15.49■□□□□ 0.07
CLN3-230ENST00000568076 TGFAP01135 160 aa15.49■□□□□ 0.07
CLN3-230ENST00000568076 TMEM95Q3KNT9 176 aa15.49■□□□□ 0.07
CLN3-230ENST00000568076 MUC21Q5SSG8 566 aa15.49■□□□□ 0.07
CLN3-230ENST00000568076 OR4X2Q8NGF9 303 aa15.49■□□□□ 0.07
CLN3-230ENST00000568076 PAM16Q9Y3D7 125 aa15.49■□□□□ 0.07
CLN3-230ENST00000568076 CHCHD1Q96BP2 118 aaKnown RBP15.49■□□□□ 0.07
CLN3-230ENST00000568076 CSPG4Q6UVK1 2322 aa15.48■□□□□ 0.07
CLN3-230ENST00000568076 IGLC6P0CF74 106 aa15.48■□□□□ 0.07
CLN3-230ENST00000568076 ZNF138P52744 262 aa15.48■□□□□ 0.07
CLN3-230ENST00000568076 RPS20P60866 119 aaKnown RBP15.48■□□□□ 0.07
CLN3-230ENST00000568076 SRSF2Q01130 221 aaKnown RBP15.48■□□□□ 0.07
CLN3-230ENST00000568076 GPHB5Q86YW7 130 aa15.48■□□□□ 0.07
CLN3-230ENST00000568076 VAMP8Q9BV40 100 aa15.48■□□□□ 0.07
CLN3-230ENST00000568076 C2orf70A6NJV1 201 aa15.47■□□□□ 0.07
CLN3-230ENST00000568076 FABP5P3A8MUU1 101 aa15.47■□□□□ 0.07
CLN3-230ENST00000568076 RNF223E7ERA6 249 aa15.47■□□□□ 0.07
CLN3-230ENST00000568076 USP9YO00507 2555 aaPredicted RBP15.47■□□□□ 0.07
CLN3-230ENST00000568076 LINC00614P0C842 121 aa15.47■□□□□ 0.07
CLN3-230ENST00000568076 CTRLP40313 264 aa15.47■□□□□ 0.07
CLN3-230ENST00000568076 FER1L6-AS1Q8NA97 138 aa15.47■□□□□ 0.07
CLN3-230ENST00000568076 C20orf144Q9BQM9 153 aa15.47■□□□□ 0.07
CLN3-230ENST00000568076 ZANQ9Y493 2812 aa15.47■□□□□ 0.07
CLN3-230ENST00000568076 CENPEQ02224 2701 aa15.47■□□□□ 0.07
CLN3-230ENST00000568076 IGHV1-24A0A0C4DH33 117 aa15.47■□□□□ 0.07
CLN3-230ENST00000568076 J3QLI3 93 aa15.47■□□□□ 0.07
CLN3-230ENST00000568076 ORM1P02763 201 aa15.47■□□□□ 0.07
CLN3-230ENST00000568076 C16orf92Q96LL3 132 aa15.47■□□□□ 0.07
CLN3-230ENST00000568076 C20orf173Q96LM9 149 aa15.47■□□□□ 0.07
CLN3-230ENST00000568076 LOXL1Q08397 574 aaPredicted RBP15.46■□□□□ 0.07
CLN3-230ENST00000568076 CLEC5AQ9NY25 188 aa15.46■□□□□ 0.07
CLN3-230ENST00000568076 LINC01559Q495D7 138 aa15.45■□□□□ 0.06
CLN3-230ENST00000568076 NPFFR1Q9GZQ6 430 aa15.45■□□□□ 0.06
CLN3-230ENST00000568076 A0A0G2JLM5 398 aa15.45■□□□□ 0.06
CLN3-230ENST00000568076 TMEM78Q5T7P6 136 aa15.45■□□□□ 0.06
CLN3-230ENST00000568076 C9orf47Q6ZRZ4 202 aa15.45■□□□□ 0.06
CLN3-230ENST00000568076 AMN1Q8IY45 258 aa15.45■□□□□ 0.06
CLN3-230ENST00000568076 ZNF580Q9UK33 172 aa15.45■□□□□ 0.06
CLN3-230ENST00000568076 CSN3P07498 182 aa15.44■□□□□ 0.06
CLN3-230ENST00000568076 FAM104BQ5XKR9 115 aa15.44■□□□□ 0.06
CLN3-230ENST00000568076 C9orf139Q6ZV77 190 aa15.44■□□□□ 0.06
CLN3-230ENST00000568076 C11orf21Q9P2W6 132 aa15.44■□□□□ 0.06
CLN3-230ENST00000568076 SOCS3O14543 225 aa15.44■□□□□ 0.06
CLN3-230ENST00000568076 IGHV4-31P0DP07 118 aa15.44■□□□□ 0.06
CLN3-230ENST00000568076 LINC00173Q6ZV60 143 aa15.44■□□□□ 0.06
CLN3-230ENST00000568076 SPATA12Q7Z6I5 190 aa15.44■□□□□ 0.06
CLN3-230ENST00000568076 EPG5Q9HCE0 2579 aa15.43■□□□□ 0.06
CLN3-230ENST00000568076 IGKV3D-20A0A0C4DH25 116 aa15.43■□□□□ 0.06
CLN3-230ENST00000568076 BTF3P20290 206 aaKnown RBP15.43■□□□□ 0.06
CLN3-230ENST00000568076 C10orf99Q6UWK7 81 aa15.43■□□□□ 0.06
CLN3-230ENST00000568076 U3KQK5 164 aa15.43■□□□□ 0.06
CLN3-230ENST00000568076 PPP1R14DQ9NXH3 145 aa15.42■□□□□ 0.06
CLN3-230ENST00000568076 PTPN13Q12923 2485 aa15.42■□□□□ 0.06
CLN3-230ENST00000568076 D6R8Y8 96 aa15.42■□□□□ 0.06
CLN3-230ENST00000568076 FSHBP01225 129 aa15.42■□□□□ 0.06
CLN3-230ENST00000568076 PSMB8P28062 276 aa15.42■□□□□ 0.06
CLN3-230ENST00000568076 TWIST1Q15672 202 aa15.42■□□□□ 0.06
CLN3-230ENST00000568076 TM4SF20Q53R12 229 aa15.42■□□□□ 0.06
CLN3-230ENST00000568076 Q6ZQT7 251 aa15.42■□□□□ 0.06
CLN3-230ENST00000568076 CNFNQ9BYD5 112 aa15.42■□□□□ 0.06
CLN3-230ENST00000568076 MSRB1Q9NZV6 116 aa15.42■□□□□ 0.06
CLN3-230ENST00000568076 MRPL51Q4U2R6 128 aaKnown RBP15.41■□□□□ 0.06
CLN3-230ENST00000568076 DMRTA1Q5VZB9 504 aa15.41■□□□□ 0.06
CLN3-230ENST00000568076 ATOH7Q8N100 152 aa15.41■□□□□ 0.06
CLN3-230ENST00000568076 ZNF738Q8NE65 137 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 91.9 ms