RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 ZNF491Q8N8L2 437 aa12.9□□□□□ -0.34
CUX1-213ENST00000549414 OVOL1O14753 267 aa12.9□□□□□ -0.34
CUX1-213ENST00000549414 PAX1P15863 534 aa12.9□□□□□ -0.34
CUX1-213ENST00000549414 PET117Q6UWS5 81 aa12.9□□□□□ -0.34
CUX1-213ENST00000549414 C9orf139Q6ZV77 190 aa12.9□□□□□ -0.34
CUX1-213ENST00000549414 STHQ8IWL8 128 aa12.9□□□□□ -0.34
CUX1-213ENST00000549414 KLHL30-AS1Q8NEE0 82 aa12.9□□□□□ -0.34
CUX1-213ENST00000549414 NXT2Q9NPJ8 142 aaKnown RBP12.9□□□□□ -0.34
CUX1-213ENST00000549414 TNFRSF18Q9Y5U5 241 aa12.9□□□□□ -0.34
CUX1-213ENST00000549414 IFI27P40305 119 aaPredicted RBP12.9□□□□□ -0.35
CUX1-213ENST00000549414 C1orf229Q6ZS94 237 aaPredicted RBP12.9□□□□□ -0.35
CUX1-213ENST00000549414 LGALS3P17931 250 aaKnown RBP12.89□□□□□ -0.35
CUX1-213ENST00000549414 PATE2Q6UY27 113 aa12.89□□□□□ -0.35
CUX1-213ENST00000549414 C14orf178Q8N769 122 aaPredicted RBP12.89□□□□□ -0.35
CUX1-213ENST00000549414 PDE6HQ13956 83 aa12.89□□□□□ -0.35
CUX1-213ENST00000549414 KIAA1549Q9HCM3 1950 aa12.88□□□□□ -0.35
CUX1-213ENST00000549414 POLR3KQ9Y2Y1 108 aaPredicted RBP12.88□□□□□ -0.35
CUX1-213ENST00000549414 SYNJ2BPP57105 145 aa12.88□□□□□ -0.35
CUX1-213ENST00000549414 Q6ZWC4 215 aa12.88□□□□□ -0.35
CUX1-213ENST00000549414 TMEM75Q8N9X5 138 aa12.88□□□□□ -0.35
CUX1-213ENST00000549414 HCFC1P51610 2035 aa12.88□□□□□ -0.35
CUX1-213ENST00000549414 RIPPLY3P57055 190 aa12.88□□□□□ -0.35
CUX1-213ENST00000549414 C19orf54Q5BKX5 351 aa12.88□□□□□ -0.35
CUX1-213ENST00000549414 ACANP16112 2415 aa12.88□□□□□ -0.35
CUX1-213ENST00000549414 Q0VG73 95 aa12.88□□□□□ -0.35
CUX1-213ENST00000549414 LYRM7Q5U5X0 104 aa12.88□□□□□ -0.35
CUX1-213ENST00000549414 ZC2HC1AQ96GY0 325 aa12.88□□□□□ -0.35
CUX1-213ENST00000549414 H3BRN7 92 aa12.87□□□□□ -0.35
CUX1-213ENST00000549414 DEFB121Q5J5C9 76 aa12.87□□□□□ -0.35
CUX1-213ENST00000549414 SFTA2Q6UW10 78 aa12.87□□□□□ -0.35
CUX1-213ENST00000549414 RCHY1Q96PM5 261 aa12.87□□□□□ -0.35
CUX1-213ENST00000549414 GEMIN7Q9H840 131 aaKnown RBP12.87□□□□□ -0.35
CUX1-213ENST00000549414 MRPL27Q9P0M9 148 aaKnown RBP12.87□□□□□ -0.35
CUX1-213ENST00000549414 IGKV1-17P01599 117 aa12.87□□□□□ -0.35
CUX1-213ENST00000549414 DPH3Q96FX2 82 aa12.87□□□□□ -0.35
CUX1-213ENST00000549414 ST20Q9HBF5 79 aa12.87□□□□□ -0.35
CUX1-213ENST00000549414 IGHV3-73A0A0B4J1V6 119 aa12.86□□□□□ -0.35
CUX1-213ENST00000549414 SYS1-DBNDD2H3BUS1 97 aa12.86□□□□□ -0.35
CUX1-213ENST00000549414 VGLL1Q99990 258 aa12.86□□□□□ -0.35
CUX1-213ENST00000549414 BPTFQ12830 3046 aa12.86□□□□□ -0.35
CUX1-213ENST00000549414 P0C879 139 aa12.86□□□□□ -0.35
CUX1-213ENST00000549414 DAZAP2Q15038 168 aaPredicted RBP12.86□□□□□ -0.35
CUX1-213ENST00000549414 C3orf56Q8N813 242 aa12.86□□□□□ -0.35
CUX1-213ENST00000549414 NAA38Q9BRA0 125 aaKnown RBP12.86□□□□□ -0.35
CUX1-213ENST00000549414 K7ERU9 68 aa12.86□□□□□ -0.35
CUX1-213ENST00000549414 EREGO14944 169 aa12.86□□□□□ -0.35
CUX1-213ENST00000549414 SRSF1Q07955 248 aaKnown RBP eCLIP12.86□□□□□ -0.35
CUX1-213ENST00000549414 TMEM238LA0A1B0GVL6 79 aa12.86□□□□□ -0.35
CUX1-213ENST00000549414 A6NJY4 79 aa12.86□□□□□ -0.35
CUX1-213ENST00000549414 TTC9CQ8N5M4 171 aa12.86□□□□□ -0.35
CUX1-213ENST00000549414 PPP1R17O96001 155 aa12.85□□□□□ -0.35
CUX1-213ENST00000549414 CGB3P0DN86 165 aa12.85□□□□□ -0.35
CUX1-213ENST00000549414 CGB7P0DN87 165 aa12.85□□□□□ -0.35
CUX1-213ENST00000549414 LINC00469Q8N7U9 141 aa12.85□□□□□ -0.35
CUX1-213ENST00000549414 PRR25Q96S07 402 aa12.85□□□□□ -0.35
CUX1-213ENST00000549414 ZNF492Q9P255 531 aa12.85□□□□□ -0.35
CUX1-213ENST00000549414 DSCAMO60469 2012 aa12.85□□□□□ -0.35
CUX1-213ENST00000549414 NDUFS8O00217 210 aa12.85□□□□□ -0.35
CUX1-213ENST00000549414 RPL13AP40429 203 aaKnown RBP12.85□□□□□ -0.35
CUX1-213ENST00000549414 USMG5Q96IX5 58 aa12.85□□□□□ -0.35
CUX1-213ENST00000549414 HOXB4P17483 251 aaPredicted RBP12.85□□□□□ -0.35
CUX1-213ENST00000549414 C8orf31Q8N9H6 132 aa12.85□□□□□ -0.35
CUX1-213ENST00000549414 PEF1Q9UBV8 284 aaKnown RBP12.85□□□□□ -0.35
CUX1-213ENST00000549414 DAZ1Q9NQZ3 744 aaKnown RBP12.84□□□□□ -0.35
CUX1-213ENST00000549414 SMIM27A0A1W2PRY6 76 aa12.84□□□□□ -0.35
CUX1-213ENST00000549414 FAM223BA6NKX1 122 aa12.84□□□□□ -0.35
CUX1-213ENST00000549414 H7C1H1 209 aa12.84□□□□□ -0.35
CUX1-213ENST00000549414 IGLV1-47P01700 117 aa12.84□□□□□ -0.35
CUX1-213ENST00000549414 FAM223AQ8IWN6 122 aa12.84□□□□□ -0.35
CUX1-213ENST00000549414 K7EIM0 57 aa12.84□□□□□ -0.35
CUX1-213ENST00000549414 FRMD6-AS1P0C7T7 363 aa12.84□□□□□ -0.35
CUX1-213ENST00000549414 FAM231DQ6ZW35 169 aa12.84□□□□□ -0.35
CUX1-213ENST00000549414 GTSCR1Q86UQ5 136 aa12.84□□□□□ -0.35
CUX1-213ENST00000549414 IGHV4-61A0A0C4DH41 118 aa12.84□□□□□ -0.35
CUX1-213ENST00000549414 A8MWP6 167 aa12.84□□□□□ -0.35
CUX1-213ENST00000549414 APOMO95445 188 aa12.84□□□□□ -0.35
CUX1-213ENST00000549414 C8orf86Q6ZUL3 223 aa12.84□□□□□ -0.35
CUX1-213ENST00000549414 ALKBH7Q9BT30 221 aaPredicted RBP12.84□□□□□ -0.35
CUX1-213ENST00000549414 A0A087WWL8 130 aa12.83□□□□□ -0.36
CUX1-213ENST00000549414 IGKV3D-20A0A0C4DH25 116 aa12.83□□□□□ -0.36
CUX1-213ENST00000549414 SNCGO76070 127 aa12.83□□□□□ -0.36
CUX1-213ENST00000549414 DPM2O94777 84 aa12.83□□□□□ -0.36
CUX1-213ENST00000549414 SMIM13P0DJ93 91 aa12.83□□□□□ -0.36
CUX1-213ENST00000549414 A0A087X0K7 114 aa12.83□□□□□ -0.36
CUX1-213ENST00000549414 H3BUT2 72 aa12.83□□□□□ -0.36
CUX1-213ENST00000549414 PLP1P60201 277 aa12.83□□□□□ -0.36
CUX1-213ENST00000549414 TMEM158Q8WZ71 300 aa12.83□□□□□ -0.36
CUX1-213ENST00000549414 SUMO2P61956 95 aaKnown RBP12.83□□□□□ -0.36
CUX1-213ENST00000549414 OR11H6Q8NGC7 330 aa12.83□□□□□ -0.36
CUX1-213ENST00000549414 FAM167A-AS1Q96KT0 104 aa12.83□□□□□ -0.36
CUX1-213ENST00000549414 NUPR1O60356 82 aa12.82□□□□□ -0.36
CUX1-213ENST00000549414 DUSP14O95147 198 aaKnown RBP12.82□□□□□ -0.36
CUX1-213ENST00000549414 IGLV2-23P01705 113 aa12.82□□□□□ -0.36
CUX1-213ENST00000549414 RPL35AP18077 110 aaKnown RBP12.82□□□□□ -0.36
CUX1-213ENST00000549414 LINC00477Q96M19 166 aa12.82□□□□□ -0.36
CUX1-213ENST00000549414 NHP2Q9NX24 153 aaKnown RBP12.82□□□□□ -0.36
CUX1-213ENST00000549414 MPV17L2Q567V2 206 aa12.82□□□□□ -0.36
CUX1-213ENST00000549414 TMEM14CQ9P0S9 112 aa12.82□□□□□ -0.36
CUX1-213ENST00000549414 CYSLTR1Q9Y271 337 aa12.82□□□□□ -0.36
CUX1-213ENST00000549414 ZFP36P26651 326 aaKnown RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 150 ms