RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 FNDC4Q9H6D8 234 aaPredicted RBP3.23□□□□□ -1.89
CD44-226ENST00000527889 PARP11Q9NR21 331 aa3.23□□□□□ -1.89
CD44-226ENST00000527889 SPANXCQ9NY87 97 aa3.23□□□□□ -1.89
CD44-226ENST00000527889 MOB4Q9Y3A3 225 aa3.23□□□□□ -1.89
CD44-226ENST00000527889 S4R3C0 116 aa3.23□□□□□ -1.89
CD44-226ENST00000527889 IGKV1OR2-108A0A075B7D4 117 aa3.22□□□□□ -1.89
CD44-226ENST00000527889 A6NDX4 124 aa3.22□□□□□ -1.89
CD44-226ENST00000527889 FAM74A7A6NL05 159 aa3.22□□□□□ -1.89
CD44-226ENST00000527889 INS-IGF2F8WCM5 200 aa3.22□□□□□ -1.89
CD44-226ENST00000527889 G3V318 75 aa3.22□□□□□ -1.89
CD44-226ENST00000527889 AGPAT2O15120 278 aa3.22□□□□□ -1.89
CD44-226ENST00000527889 ATP6V0E1O15342 81 aa3.22□□□□□ -1.89
CD44-226ENST00000527889 HMGB3O15347 200 aaKnown RBP3.22□□□□□ -1.89
CD44-226ENST00000527889 SCO1O75880 301 aa3.22□□□□□ -1.89
CD44-226ENST00000527889 YIF1AO95070 293 aa3.22□□□□□ -1.89
CD44-226ENST00000527889 IGHV4-59P01825 116 aa3.22□□□□□ -1.89
CD44-226ENST00000527889 APOHP02749 345 aaPredicted RBP3.22□□□□□ -1.89
CD44-226ENST00000527889 GATA2P23769 480 aaPredicted RBP3.22□□□□□ -1.89
CD44-226ENST00000527889 S100A2P29034 98 aa3.22□□□□□ -1.89
CD44-226ENST00000527889 OR10J1P30954 320 aa3.22□□□□□ -1.89
CD44-226ENST00000527889 RND2P52198 227 aa3.22□□□□□ -1.89
CD44-226ENST00000527889 KRTAP1-1Q07627 177 aa3.22□□□□□ -1.89
CD44-226ENST00000527889 ZNF726P1Q15940 193 aa3.22□□□□□ -1.89
CD44-226ENST00000527889 FAM74A3Q4VXF1 159 aa3.22□□□□□ -1.89
CD44-226ENST00000527889 UNQ5815/PRO19632Q6UWF5 114 aa3.22□□□□□ -1.89
CD44-226ENST00000527889 LCN15Q6UWW0 184 aa3.22□□□□□ -1.89
CD44-226ENST00000527889 LINC00336Q6ZUF6 198 aa3.22□□□□□ -1.89
CD44-226ENST00000527889 ZNF709Q8N972 641 aa3.22□□□□□ -1.89
CD44-226ENST00000527889 Q8WTZ3 238 aa3.22□□□□□ -1.89
CD44-226ENST00000527889 DUX3Q96PT4 197 aa3.22□□□□□ -1.89
CD44-226ENST00000527889 SLC25A22Q9H936 323 aa3.22□□□□□ -1.89
CD44-226ENST00000527889 NPVFQ9HCQ7 196 aa3.22□□□□□ -1.89
CD44-226ENST00000527889 RPRMQ9NS64 109 aa3.22□□□□□ -1.89
CD44-226ENST00000527889 DOK5Q9P104 306 aa3.22□□□□□ -1.89
CD44-226ENST00000527889 LINC00527Q9UJ94 153 aa3.22□□□□□ -1.89
CD44-226ENST00000527889 TIMM9Q9Y5J7 89 aa3.22□□□□□ -1.89
CD44-226ENST00000527889 F11RQ9Y624 299 aaKnown RBP3.22□□□□□ -1.89
CD44-226ENST00000527889 PXMP4Q9Y6I8 212 aa3.22□□□□□ -1.89
CD44-226ENST00000527889 HERC2O95714 4834 aa3.21□□□□□ -1.9
CD44-226ENST00000527889 IGKV1D-37A0A075B6S9 117 aa3.21□□□□□ -1.9
CD44-226ENST00000527889 TINCRA0A1B0GVN0 87 aa3.21□□□□□ -1.9
CD44-226ENST00000527889 MAP1LC3B2A6NCE7 125 aa3.21□□□□□ -1.9
CD44-226ENST00000527889 UMAD1C9J7I0 102 aa3.21□□□□□ -1.9
CD44-226ENST00000527889 FNDC10F2Z333 226 aa3.21□□□□□ -1.9
CD44-226ENST00000527889 C17orf112F2Z3M2 114 aa3.21□□□□□ -1.9
CD44-226ENST00000527889 I3L2K1 104 aa3.21□□□□□ -1.9
CD44-226ENST00000527889 K7EIM0 57 aa3.21□□□□□ -1.9
CD44-226ENST00000527889 IGHV3-23P01764 117 aa3.21□□□□□ -1.9
CD44-226ENST00000527889 LINC00869P0C866 280 aa3.21□□□□□ -1.9
CD44-226ENST00000527889 RHOBP62745 196 aa3.21□□□□□ -1.9
CD44-226ENST00000527889 BLCAPP62952 87 aa3.21□□□□□ -1.9
CD44-226ENST00000527889 CCL20P78556 96 aa3.21□□□□□ -1.9
CD44-226ENST00000527889 SERF2P84101 59 aa3.21□□□□□ -1.9
CD44-226ENST00000527889 ZNF90Q03938 601 aa3.21□□□□□ -1.9
CD44-226ENST00000527889 GAGE5Q13069 117 aa3.21□□□□□ -1.9
CD44-226ENST00000527889 GAGE6Q13070 117 aa3.21□□□□□ -1.9
CD44-226ENST00000527889 PMVKQ15126 192 aa3.21□□□□□ -1.9
CD44-226ENST00000527889 ACOT6Q3I5F7 207 aaPredicted RBP3.21□□□□□ -1.9
CD44-226ENST00000527889 KRTAP15-1Q3LI76 137 aa3.21□□□□□ -1.9
CD44-226ENST00000527889 SPATA31B1PQ5VZV4 182 aa3.21□□□□□ -1.9
CD44-226ENST00000527889 PVRIGQ6DKI7 326 aa3.21□□□□□ -1.9
CD44-226ENST00000527889 SPSB3Q6PJ21 355 aa3.21□□□□□ -1.9
CD44-226ENST00000527889 TOMM20LQ6UXN7 152 aa3.21□□□□□ -1.9
CD44-226ENST00000527889 CYP2G1PQ6ZSU1 146 aa3.21□□□□□ -1.9
CD44-226ENST00000527889 HSD17B13Q7Z5P4 300 aaPredicted RBP3.21□□□□□ -1.9
CD44-226ENST00000527889 KLHDC1Q8N7A1 406 aa3.21□□□□□ -1.9
CD44-226ENST00000527889 SIGLECL1Q8N7X8 197 aa3.21□□□□□ -1.9
CD44-226ENST00000527889 OR10G4Q8NGN3 311 aa3.21□□□□□ -1.9
CD44-226ENST00000527889 OR10G9Q8NGN4 311 aa3.21□□□□□ -1.9
CD44-226ENST00000527889 OR10G7Q8NGN6 311 aa3.21□□□□□ -1.9
CD44-226ENST00000527889 SGMS2Q8NHU3 365 aa3.21□□□□□ -1.9
CD44-226ENST00000527889 PHLDA1Q8WV24 401 aaPredicted RBP3.21□□□□□ -1.9
CD44-226ENST00000527889 C17orf77Q96MU5 243 aa3.21□□□□□ -1.9
CD44-226ENST00000527889 SMR3AQ99954 134 aa3.21□□□□□ -1.9
CD44-226ENST00000527889 MAP1LC3BQ9GZQ8 125 aa3.21□□□□□ -1.9
CD44-226ENST00000527889 SLC39A9Q9NUM3 307 aa3.21□□□□□ -1.9
CD44-226ENST00000527889 MED9Q9NWA0 146 aa3.21□□□□□ -1.9
CD44-226ENST00000527889 ZFP30Q9Y2G7 519 aa3.21□□□□□ -1.9
CD44-226ENST00000527889 IGLV11-55A0A075B6I3 123 aa3.2□□□□□ -1.9
CD44-226ENST00000527889 IGLV5-37A0A075B6J1 123 aa3.2□□□□□ -1.9
CD44-226ENST00000527889 TRAV41A0A0B4J266 112 aa3.2□□□□□ -1.9
CD44-226ENST00000527889 CTXND1A0A1B0GTU2 59 aa3.2□□□□□ -1.9
CD44-226ENST00000527889 TCRBV4S1A1TA0A5B7 111 aa3.2□□□□□ -1.9
CD44-226ENST00000527889 ZFP92A6NM28 416 aa3.2□□□□□ -1.9
CD44-226ENST00000527889 C1orf196B1AJZ1 125 aa3.2□□□□□ -1.9
CD44-226ENST00000527889 CD5LO43866 347 aa3.2□□□□□ -1.9
CD44-226ENST00000527889 SOX15O60248 233 aa3.2□□□□□ -1.9
CD44-226ENST00000527889 HBE1P02100 147 aa3.2□□□□□ -1.9
CD44-226ENST00000527889 IGF1P05019 195 aa3.2□□□□□ -1.9
CD44-226ENST00000527889 HIST1H1BP16401 226 aaKnown RBP3.2□□□□□ -1.9
CD44-226ENST00000527889 SRP14P37108 136 aaKnown RBP3.2□□□□□ -1.9
CD44-226ENST00000527889 LEPP41159 167 aa3.2□□□□□ -1.9
CD44-226ENST00000527889 RPL29P47914 159 aaKnown RBP3.2□□□□□ -1.9
CD44-226ENST00000527889 RPL24P83731 157 aaKnown RBP3.2□□□□□ -1.9
CD44-226ENST00000527889 TIGITQ495A1 244 aa3.2□□□□□ -1.9
CD44-226ENST00000527889 OCIAD2Q56VL3 154 aa3.2□□□□□ -1.9
CD44-226ENST00000527889 MORN5Q5VZ52 161 aa3.2□□□□□ -1.9
CD44-226ENST00000527889 DPPA3Q6W0C5 159 aa3.2□□□□□ -1.9
CD44-226ENST00000527889 IL34Q6ZMJ4 242 aa3.2□□□□□ -1.9
CD44-226ENST00000527889 C9orf139Q6ZV77 190 aa3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 147.5 ms