RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 TRAV12-2A0A075B6T6 113 aa2.37□□□□□ -2.03
CD44-217ENST00000525348 IGHV1OR15-1A0A075B7D0 117 aa2.37□□□□□ -2.03
CD44-217ENST00000525348 IGHV7-81A0A0B4J1V7 117 aa2.37□□□□□ -2.03
CD44-217ENST00000525348 TRAV13-1A0A0B4J241 112 aa2.37□□□□□ -2.03
CD44-217ENST00000525348 A0A0D9SEW6 157 aa2.37□□□□□ -2.03
CD44-217ENST00000525348 A0A0J9YXY3 114 aa2.37□□□□□ -2.03
CD44-217ENST00000525348 TRBV7-7A0A0K0K1E9 115 aa2.37□□□□□ -2.03
CD44-217ENST00000525348 PLAC8L1A1L4L8 177 aa2.37□□□□□ -2.03
CD44-217ENST00000525348 ARL6IP5O75915 188 aa2.37□□□□□ -2.03
CD44-217ENST00000525348 LYZL6O75951 148 aa2.37□□□□□ -2.03
CD44-217ENST00000525348 APOMO95445 188 aa2.37□□□□□ -2.03
CD44-217ENST00000525348 TCL1BO95988 128 aa2.37□□□□□ -2.03
CD44-217ENST00000525348 CD3DP04234 171 aa2.37□□□□□ -2.03
CD44-217ENST00000525348 COX7CP15954 63 aa2.37□□□□□ -2.03
CD44-217ENST00000525348 COL8A2P25067 703 aa2.37□□□□□ -2.03
CD44-217ENST00000525348 FKBP1AP62942 108 aaKnown RBP2.37□□□□□ -2.03
CD44-217ENST00000525348 ERCC8Q13216 396 aa2.37□□□□□ -2.03
CD44-217ENST00000525348 Q56UQ5 140 aa2.37□□□□□ -2.03
CD44-217ENST00000525348 MORN3Q6PF18 240 aaPredicted RBP2.37□□□□□ -2.03
CD44-217ENST00000525348 RFLNAQ6ZTI6 216 aa2.37□□□□□ -2.03
CD44-217ENST00000525348 FP248Q71RG6 208 aaPredicted RBP2.37□□□□□ -2.03
CD44-217ENST00000525348 HMGN2P46Q86SG4 172 aa2.37□□□□□ -2.03
CD44-217ENST00000525348 MSRB3Q8IXL7 192 aa2.37□□□□□ -2.03
CD44-217ENST00000525348 SLC22A24Q8N4F4 322 aa2.37□□□□□ -2.03
CD44-217ENST00000525348 C20orf203Q8NBC4 194 aa2.37□□□□□ -2.03
CD44-217ENST00000525348 LY6G5BQ8NDX9 201 aa2.37□□□□□ -2.03
CD44-217ENST00000525348 WFDC11Q8NEX6 87 aa2.37□□□□□ -2.03
CD44-217ENST00000525348 DCANP1Q8TF63 244 aa2.37□□□□□ -2.03
CD44-217ENST00000525348 TMEM158Q8WZ71 300 aa2.37□□□□□ -2.03
CD44-217ENST00000525348 AQP10Q96PS8 301 aa2.37□□□□□ -2.03
CD44-217ENST00000525348 DSCR8Q96T75 97 aa2.37□□□□□ -2.03
CD44-217ENST00000525348 MRPL20Q9BYC9 149 aaKnown RBP2.37□□□□□ -2.03
CD44-217ENST00000525348 EIF5A2Q9GZV4 153 aaKnown RBP2.37□□□□□ -2.03
CD44-217ENST00000525348 TP73-AS1Q9UF72 201 aa2.37□□□□□ -2.03
CD44-217ENST00000525348 RABAC1Q9UI14 185 aa2.37□□□□□ -2.03
CD44-217ENST00000525348 PCTPQ9UKL6 214 aa2.37□□□□□ -2.03
CD44-217ENST00000525348 OARD1Q9Y530 152 aa2.37□□□□□ -2.03
CD44-217ENST00000525348 CPAMD8Q8IZJ3 1885 aa2.37□□□□□ -2.03
CD44-217ENST00000525348 DOCK9Q9BZ29 2069 aa2.37□□□□□ -2.03
CD44-217ENST00000525348 A0A0G2JMZ2 1700 aa2.37□□□□□ -2.03
CD44-217ENST00000525348 VCANP13611 3396 aa2.36□□□□□ -2.03
CD44-217ENST00000525348 NUMA1Q14980 2115 aa2.36□□□□□ -2.03
CD44-217ENST00000525348 RANBP2P49792 3224 aaKnown RBP2.36□□□□□ -2.03
CD44-217ENST00000525348 IGLV3-16A0A075B6K0 115 aa2.36□□□□□ -2.03
CD44-217ENST00000525348 KNCNA6PVL3 124 aa2.36□□□□□ -2.03
CD44-217ENST00000525348 NDUFC2-KCTD14E9PQ53 114 aa2.36□□□□□ -2.03
CD44-217ENST00000525348 K7N7A8 449 aa2.36□□□□□ -2.03
CD44-217ENST00000525348 GNGT2O14610 69 aa2.36□□□□□ -2.03
CD44-217ENST00000525348 SS18L1O75177 396 aaPredicted RBP2.36□□□□□ -2.03
CD44-217ENST00000525348 ZNF324O75467 553 aaPredicted RBP2.36□□□□□ -2.03
CD44-217ENST00000525348 SNCGO76070 127 aa2.36□□□□□ -2.03
CD44-217ENST00000525348 TRACP01848 142 aa2.36□□□□□ -2.03
CD44-217ENST00000525348 PYYP10082 97 aa2.36□□□□□ -2.03
CD44-217ENST00000525348 HLA-DRB4P13762 266 aa2.36□□□□□ -2.03
CD44-217ENST00000525348 PTGDSP41222 190 aa2.36□□□□□ -2.03
CD44-217ENST00000525348 SUB1P53999 127 aaKnown RBP eCLIP2.36□□□□□ -2.03
CD44-217ENST00000525348 QRFPP83859 136 aa2.36□□□□□ -2.03
CD44-217ENST00000525348 RSPO1Q2MKA7 263 aaPredicted RBP2.36□□□□□ -2.03
CD44-217ENST00000525348 CFAP126Q5VTH2 177 aa2.36□□□□□ -2.03
CD44-217ENST00000525348 SIGLECL1Q8N7X8 197 aa2.36□□□□□ -2.03
CD44-217ENST00000525348 APCDD1LQ8NCL9 501 aa2.36□□□□□ -2.03
CD44-217ENST00000525348 OR8B3Q8NGG8 313 aa2.36□□□□□ -2.03
CD44-217ENST00000525348 OR2T10Q8NGZ9 312 aa2.36□□□□□ -2.03
CD44-217ENST00000525348 OR10AC1Q8NH08 325 aa2.36□□□□□ -2.03
CD44-217ENST00000525348 MRPL30Q8TCC3 161 aaKnown RBP2.36□□□□□ -2.03
CD44-217ENST00000525348 MYOZ3Q8TDC0 251 aa2.36□□□□□ -2.03
CD44-217ENST00000525348 PPP1R1CQ8WVI7 109 aa2.36□□□□□ -2.03
CD44-217ENST00000525348 GEMIN6Q8WXD5 167 aaKnown RBP2.36□□□□□ -2.03
CD44-217ENST00000525348 ODF3Q96PU9 254 aa2.36□□□□□ -2.03
CD44-217ENST00000525348 OR8B2Q96RD0 313 aa2.36□□□□□ -2.03
CD44-217ENST00000525348 UPK3BQ9BT76 320 aa2.36□□□□□ -2.03
CD44-217ENST00000525348 RTL8AQ9BWD3 113 aa2.36□□□□□ -2.03
CD44-217ENST00000525348 CST11Q9H112 138 aa2.36□□□□□ -2.03
CD44-217ENST00000525348 CYSTM1Q9H1C7 97 aa2.36□□□□□ -2.03
CD44-217ENST00000525348 NAA60Q9H7X0 242 aa2.36□□□□□ -2.03
CD44-217ENST00000525348 F11RQ9Y624 299 aaKnown RBP2.36□□□□□ -2.03
CD44-217ENST00000525348 HLA-DRB4X5D2U9 266 aa2.36□□□□□ -2.03
CD44-217ENST00000525348 COL4A6Q14031 1691 aa2.36□□□□□ -2.03
CD44-217ENST00000525348 CEP290O15078 2479 aa2.36□□□□□ -2.03
CD44-217ENST00000525348 SIP14410 1827 aa2.35□□□□□ -2.03
CD44-217ENST00000525348 OBSL1O75147 1896 aa2.35□□□□□ -2.03
CD44-217ENST00000525348 SMIM26A0A096LP01 95 aa2.35□□□□□ -2.03
CD44-217ENST00000525348 TRGV5A0A0B4J1U4 118 aa2.35□□□□□ -2.03
CD44-217ENST00000525348 TRBV7-6A0A0J9YX20 115 aa2.35□□□□□ -2.03
CD44-217ENST00000525348 LYRM9A8MSI8 78 aa2.35□□□□□ -2.03
CD44-217ENST00000525348 LINC01619G3V211 115 aa2.35□□□□□ -2.03
CD44-217ENST00000525348 J3QT63 122 aa2.35□□□□□ -2.03
CD44-217ENST00000525348 FGF1P05230 155 aa2.35□□□□□ -2.03
CD44-217ENST00000525348 CD7P09564 240 aa2.35□□□□□ -2.03
CD44-217ENST00000525348 COX8AP10176 69 aa2.35□□□□□ -2.03
CD44-217ENST00000525348 COX5AP20674 150 aa2.35□□□□□ -2.03
CD44-217ENST00000525348 IL3RAP26951 378 aa2.35□□□□□ -2.03
CD44-217ENST00000525348 AQP1P29972 269 aa2.35□□□□□ -2.03
CD44-217ENST00000525348 MPV17P39210 176 aa2.35□□□□□ -2.03
CD44-217ENST00000525348 HBG1P69891 147 aa2.35□□□□□ -2.03
CD44-217ENST00000525348 HBG2P69892 147 aa2.35□□□□□ -2.03
CD44-217ENST00000525348 RTL8BQ17RB0 113 aa2.35□□□□□ -2.03
CD44-217ENST00000525348 NCBP2-AS2Q69YL0 99 aa2.35□□□□□ -2.03
CD44-217ENST00000525348 RPL7L1Q6DKI1 246 aaKnown RBP2.35□□□□□ -2.03
CD44-217ENST00000525348 LINC00596Q86U02 117 aa2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 97.5 ms