RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 NRGNQ92686 78 aa12.57□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 ST20Q9HBF5 79 aa12.57□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 CSN3P07498 182 aa12.56□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 C11orf71Q6IPW1 123 aa12.56□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 UNC79Q9P2D8 2635 aa12.56□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 CCDC168Q8NDH2 2452 aa12.56□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 MED13LQ71F56 2210 aa12.56□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 AMMECR1LQ6DCA0 310 aa12.56□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 DEFB125Q8N687 156 aa12.56□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 Q8N6K4 173 aa12.56□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 ARPC1AQ92747 370 aa12.56□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 TIMD4Q96H15 378 aa12.56□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 MCRIP2Q9BUT9 160 aaKnown RBP12.56□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 ZFHX3Q15911 3703 aa12.55□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 A0A1B0GW15 77 aa12.55□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 FER1L6-AS1Q8NA97 138 aa12.55□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 SETXQ7Z333 2677 aaKnown RBP12.54□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 ZNF493Q6ZR52 646 aa12.54□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 MAP1LC3CQ9BXW4 147 aa12.54□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 TMEM191AQ9H0A3 160 aa12.54□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 C21orf62Q9NYP8 219 aa12.54□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 BAHCC1Q9P281 2608 aa12.54□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 IGHV3-23P01764 117 aa12.54□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 Q6AWC8 147 aa12.54□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 AAMDCQ9H7C9 122 aa12.54□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 SAP30O75446 220 aa12.53□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 EGR2P11161 476 aaPredicted RBP12.53□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 COX8CQ7Z4L0 72 aa12.53□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 TPPP3Q9BW30 176 aa12.53□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 SH2D1AO60880 128 aa12.53□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 LYZL1Q6UWQ5 148 aa12.53□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 VMO1Q7Z5L0 202 aa12.53□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 ATP6V0BQ99437 205 aa12.53□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 HSPB8Q9UJY1 196 aa12.53□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 IGKV2-40A0A087WW87 121 aaPredicted RBP12.52□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 OR2T8A6NH00 312 aa12.52□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 NCBP2LA6PVI3 153 aaKnown RBP12.52□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 IGKV2D-40P01614 121 aaPredicted RBP12.52□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 CT45A10P0DMU9 189 aa12.52□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 EBI3Q14213 229 aa12.52□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 AP5S1Q9NUS5 200 aa12.52□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 SMAD5-AS1Q9Y6J3 95 aa12.52□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 SERTM2A0A1B0GWG4 89 aa12.52□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 TMEM213A2RRL7 107 aa12.52□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 TMEM189A5PLL7 270 aa12.52□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 CTSGP08311 255 aa12.52□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 FAM106CPP0CH98 169 aa12.52□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 PSG9Q00887 426 aa12.52□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 FAM106AQ4KMX7 169 aa12.52□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 LINC01545Q5VT33 79 aa12.52□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 ZNF747Q9BV97 191 aa12.52□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 SCRT2Q9NQ03 307 aa12.52□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 PEF1Q9UBV8 284 aaKnown RBP12.52□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 TMSB15BA0A087X1C1 80 aa12.51□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 CD5LO43866 347 aa12.51□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 IGHG4P01861 327 aa12.51□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 C1orf122Q6ZSJ8 110 aa12.51□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 U3KQK5 164 aa12.51□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 ZANQ9Y493 2812 aa12.51□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 A0A096LNJ9 63 aa12.5□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 ZFP36P26651 326 aaKnown RBP12.5□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 CSN1S1P47710 185 aa12.5□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 C12orf54Q6X4T0 127 aa12.5□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 PMCHL2Q9BQD1 86 aa12.5□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 UBTD1Q9HAC8 227 aa12.5□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 NAV2Q8IVL1 2488 aa12.5□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 IGHV7-81A0A0B4J1V7 117 aa12.5□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 H0Y8G0 127 aa12.5□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 RPL7P18124 248 aaKnown RBP12.5□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 LOXL1Q08397 574 aaPredicted RBP12.5□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 CCDC144NLQ6NUI1 221 aa12.5□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 ZNF575Q86XF7 245 aa12.5□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 PRSS3P2Q8NHM4 247 aa12.5□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 PRR25Q96S07 402 aa12.5□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 TIMM8BQ9Y5J9 83 aaPredicted RBP12.5□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 OOSP1A8MZH6 123 aa12.49□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 D6R8Y8 96 aa12.49□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 NCR2O95944 276 aa12.49□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 SMIM17P0DL12 118 aa12.49□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 IFI27P40305 119 aaPredicted RBP12.49□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 MPV17L2Q567V2 206 aa12.49□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 BVES-AS1Q5T3Y7 98 aa12.49□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 FAM104BQ5XKR9 115 aa12.49□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 SLC25A34Q6PIV7 304 aa12.49□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 FA2HQ7L5A8 372 aa12.49□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 HLA-DMBP28068 263 aa12.49□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 ZNF80P51504 273 aaPredicted RBP12.49□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 KRTAP10-9P60411 292 aa12.49□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 IGFL4Q6B9Z1 124 aa12.49□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 AMN1Q8IY45 258 aa12.49□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 PSMG3-AS1Q96PY0 264 aa12.49□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 VGLL1Q99990 258 aa12.49□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 THYN1Q9P016 225 aa12.49□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 MINOS1Q5TGZ0 78 aa12.48□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 Q8N9W7 124 aa12.48□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 OR1N2Q8NGR9 330 aa12.48□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 OR10AG1Q8NH19 301 aa12.48□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 MS4A6AQ9H2W1 248 aa12.48□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 SIGLEC8Q9NYZ4 499 aa12.48□□□□□ -0.41
MSH5-SAPCD1-208ENST00000498473 MINOS1-NBL1R4GNA1 71 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 182.8 ms