RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 UBE2DNLQ8IWF7 75 aa10.69□□□□□ -0.7
USP39-217ENST00000491659 RNASE8Q8TDE3 154 aaKnown RBP10.69□□□□□ -0.7
USP39-217ENST00000491659 RNF141Q8WVD5 230 aa10.69□□□□□ -0.7
USP39-217ENST00000491659 LINC00477Q96M19 166 aa10.69□□□□□ -0.7
USP39-217ENST00000491659 ATP5G1P05496 136 aa10.68□□□□□ -0.7
USP39-217ENST00000491659 GIPP09681 153 aaPredicted RBP10.68□□□□□ -0.7
USP39-217ENST00000491659 ATP5G3P48201 142 aa10.68□□□□□ -0.7
USP39-217ENST00000491659 ERCC8Q13216 396 aa10.68□□□□□ -0.7
USP39-217ENST00000491659 TMEM78Q5T7P6 136 aa10.68□□□□□ -0.7
USP39-217ENST00000491659 POM121L12Q8N7R1 296 aa10.68□□□□□ -0.7
USP39-217ENST00000491659 PHYHIPLQ96FC7 376 aa10.68□□□□□ -0.7
USP39-217ENST00000491659 PYGO2Q9BRQ0 406 aa10.68□□□□□ -0.7
USP39-217ENST00000491659 WFDC1Q9HC57 220 aa10.68□□□□□ -0.7
USP39-217ENST00000491659 KMT2AQ03164 3969 aa10.67□□□□□ -0.7
USP39-217ENST00000491659 IGKV2-40A0A087WW87 121 aaPredicted RBP10.67□□□□□ -0.7
USP39-217ENST00000491659 C7orf71A4D174 169 aa10.67□□□□□ -0.7
USP39-217ENST00000491659 SNURFLB1AK76 121 aa10.67□□□□□ -0.7
USP39-217ENST00000491659 IGKV2D-40P01614 121 aaPredicted RBP10.67□□□□□ -0.7
USP39-217ENST00000491659 CSN1S1P47710 185 aa10.67□□□□□ -0.7
USP39-217ENST00000491659 ZNF266Q14584 549 aa10.67□□□□□ -0.7
USP39-217ENST00000491659 ACOT6Q3I5F7 207 aaPredicted RBP10.67□□□□□ -0.7
USP39-217ENST00000491659 C9orf47Q6ZRZ4 202 aa10.67□□□□□ -0.7
USP39-217ENST00000491659 C15orf53Q8NAA6 179 aa10.67□□□□□ -0.7
USP39-217ENST00000491659 AGPAT4-IT1Q9H0P7 198 aa10.67□□□□□ -0.7
USP39-217ENST00000491659 NOP10Q9NPE3 64 aaKnown RBP10.67□□□□□ -0.7
USP39-217ENST00000491659 CBY3A6NI87 242 aa10.66□□□□□ -0.7
USP39-217ENST00000491659 KLLNB2CW77 178 aa10.66□□□□□ -0.7
USP39-217ENST00000491659 F5H768 121 aa10.66□□□□□ -0.7
USP39-217ENST00000491659 LYPD1Q8N2G4 141 aa10.66□□□□□ -0.7
USP39-217ENST00000491659 ZNF503Q96F45 646 aa10.66□□□□□ -0.7
USP39-217ENST00000491659 EPPK1P58107 5090 aaKnown RBP10.66□□□□□ -0.7
USP39-217ENST00000491659 A0A1W2PPV4 95 aa10.65□□□□□ -0.7
USP39-217ENST00000491659 GPX1P07203 203 aa10.65□□□□□ -0.7
USP39-217ENST00000491659 CRISP2P16562 243 aa10.65□□□□□ -0.7
USP39-217ENST00000491659 M6PRP20645 277 aa10.65□□□□□ -0.7
USP39-217ENST00000491659 RANP62826 216 aaKnown RBP10.65□□□□□ -0.7
USP39-217ENST00000491659 BTN1A1Q13410 526 aa10.65□□□□□ -0.7
USP39-217ENST00000491659 ZNF680Q8NEM1 530 aa10.65□□□□□ -0.7
USP39-217ENST00000491659 OR2T35Q8NGX2 323 aa10.65□□□□□ -0.7
USP39-217ENST00000491659 FAM19A4Q96LR4 140 aa10.65□□□□□ -0.7
USP39-217ENST00000491659 AQP10Q96PS8 301 aa10.65□□□□□ -0.7
USP39-217ENST00000491659 Q9H3A6 140 aa10.65□□□□□ -0.7
USP39-217ENST00000491659 DNAH6Q9C0G6 4158 aa10.64□□□□□ -0.71
USP39-217ENST00000491659 SMLR1H3BR10 107 aa10.64□□□□□ -0.71
USP39-217ENST00000491659 NMBP08949 121 aa10.64□□□□□ -0.71
USP39-217ENST00000491659 RNASE4P34096 147 aaKnown RBP10.64□□□□□ -0.71
USP39-217ENST00000491659 RAB2AP61019 212 aa10.64□□□□□ -0.71
USP39-217ENST00000491659 VGLL1Q99990 258 aa10.64□□□□□ -0.71
USP39-217ENST00000491659 ZNF492Q9P255 531 aa10.64□□□□□ -0.71
USP39-217ENST00000491659 ZNF138P52744 262 aa10.63□□□□□ -0.71
USP39-217ENST00000491659 RNF212Q495C1 297 aa10.63□□□□□ -0.71
USP39-217ENST00000491659 FAM74A1Q5RGS3 127 aa10.63□□□□□ -0.71
USP39-217ENST00000491659 PQLC2Q6ZP29 291 aa10.63□□□□□ -0.71
USP39-217ENST00000491659 EIF4E3Q8N5X7 224 aaKnown RBP10.63□□□□□ -0.71
USP39-217ENST00000491659 HSD17B11Q8NBQ5 300 aa10.63□□□□□ -0.71
USP39-217ENST00000491659 OR10G4Q8NGN3 311 aa10.63□□□□□ -0.71
USP39-217ENST00000491659 OR10G9Q8NGN4 311 aa10.63□□□□□ -0.71
USP39-217ENST00000491659 OR10G7Q8NGN6 311 aa10.63□□□□□ -0.71
USP39-217ENST00000491659 Q8TAT8 98 aa10.63□□□□□ -0.71
USP39-217ENST00000491659 TRBV7-9A0A0J9YWB2 115 aa10.62□□□□□ -0.71
USP39-217ENST00000491659 RBAKDNA6NC62 111 aa10.62□□□□□ -0.71
USP39-217ENST00000491659 EIF3GO75821 320 aaKnown RBP eCLIP10.62□□□□□ -0.71
USP39-217ENST00000491659 ZFAND2AQ8N6M9 145 aa10.62□□□□□ -0.71
USP39-217ENST00000491659 LINC00612Q8N6U2 182 aa10.62□□□□□ -0.71
USP39-217ENST00000491659 INO80EQ8NBZ0 244 aaPredicted RBP10.62□□□□□ -0.71
USP39-217ENST00000491659 RXFP4Q8TDU9 374 aa10.62□□□□□ -0.71
USP39-217ENST00000491659 LINC00467Q9BRT7 94 aa10.62□□□□□ -0.71
USP39-217ENST00000491659 PSMG3Q9BT73 122 aaPredicted RBP10.62□□□□□ -0.71
USP39-217ENST00000491659 OTORQ9NRC9 128 aa10.62□□□□□ -0.71
USP39-217ENST00000491659 GAGE12BA1L429 117 aa10.61□□□□□ -0.71
USP39-217ENST00000491659 RGS13O14921 159 aa10.61□□□□□ -0.71
USP39-217ENST00000491659 ZNF324O75467 553 aaPredicted RBP10.61□□□□□ -0.71
USP39-217ENST00000491659 GAGE7O76087 117 aa10.61□□□□□ -0.71
USP39-217ENST00000491659 NUDT3O95989 172 aa10.61□□□□□ -0.71
USP39-217ENST00000491659 GAGE12FP0CL80 117 aa10.61□□□□□ -0.71
USP39-217ENST00000491659 GAGE12GP0CL81 117 aa10.61□□□□□ -0.71
USP39-217ENST00000491659 GAGE12IP0CL82 117 aa10.61□□□□□ -0.71
USP39-217ENST00000491659 CDC34P49427 236 aaPredicted RBP10.61□□□□□ -0.71
USP39-217ENST00000491659 NDUFA5Q16718 116 aa10.61□□□□□ -0.71
USP39-217ENST00000491659 PRR9Q5T870 116 aa10.61□□□□□ -0.71
USP39-217ENST00000491659 OR2G3Q8NGZ4 309 aa10.61□□□□□ -0.71
USP39-217ENST00000491659 CMTM2Q8TAZ6 248 aa10.61□□□□□ -0.71
USP39-217ENST00000491659 ATG101Q9BSB4 218 aa10.61□□□□□ -0.71
USP39-217ENST00000491659 FXYD6-FXYD2A0A087WZ82 144 aa10.6□□□□□ -0.71
USP39-217ENST00000491659 DIRC3C9JPN6 131 aa10.6□□□□□ -0.71
USP39-217ENST00000491659 ATP6V0CP27449 155 aa10.6□□□□□ -0.71
USP39-217ENST00000491659 DAZ2Q13117 558 aaKnown RBP10.6□□□□□ -0.71
USP39-217ENST00000491659 ANXA2RQ3ZCQ2 193 aa10.6□□□□□ -0.71
USP39-217ENST00000491659 C9orf62Q8N4C0 152 aa10.6□□□□□ -0.71
USP39-217ENST00000491659 ARPC5LQ9BPX5 153 aa10.6□□□□□ -0.71
USP39-217ENST00000491659 RPH3ALQ9UNE2 315 aa10.6□□□□□ -0.71
USP39-217ENST00000491659 NACAE9PAV3 2078 aa10.59□□□□□ -0.71
USP39-217ENST00000491659 DNAH10Q8IVF4 4471 aa10.59□□□□□ -0.71
USP39-217ENST00000491659 IGHV1OR15-1A0A075B7D0 117 aa10.59□□□□□ -0.71
USP39-217ENST00000491659 PGPA6NDG6 321 aa10.59□□□□□ -0.71
USP39-217ENST00000491659 HMSDA8MTL9 139 aa10.59□□□□□ -0.71
USP39-217ENST00000491659 M0R2N4 97 aa10.59□□□□□ -0.71
USP39-217ENST00000491659 HMGB3O15347 200 aaKnown RBP10.59□□□□□ -0.71
USP39-217ENST00000491659 MBP02144 154 aa10.59□□□□□ -0.71
USP39-217ENST00000491659 OR5I1Q13606 314 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms