RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 TRIQKQ629K1 86 aa9.46□□□□□ -0.9
SQSTM1-208ENST00000485412 PYGO2Q9BRQ0 406 aa9.46□□□□□ -0.9
SQSTM1-208ENST00000485412 GGACTQ9BVM4 153 aa9.46□□□□□ -0.9
SQSTM1-208ENST00000485412 DNAJC4Q9NNZ3 241 aa9.46□□□□□ -0.9
SQSTM1-208ENST00000485412 TP53TG3Q9ULZ0 132 aa9.46□□□□□ -0.9
SQSTM1-208ENST00000485412 LSM5Q9Y4Y9 91 aaKnown RBP9.46□□□□□ -0.9
SQSTM1-208ENST00000485412 TRGV2A0A075B6R0 118 aa9.45□□□□□ -0.9
SQSTM1-208ENST00000485412 TRGV1A0A0A0MS02 117 aa9.45□□□□□ -0.9
SQSTM1-208ENST00000485412 C7orf71A4D174 169 aa9.45□□□□□ -0.9
SQSTM1-208ENST00000485412 NAP1L6A6NFF2 107 aa9.45□□□□□ -0.9
SQSTM1-208ENST00000485412 SIVA1O15304 175 aa9.45□□□□□ -0.9
SQSTM1-208ENST00000485412 ZNF324O75467 553 aaPredicted RBP9.45□□□□□ -0.9
SQSTM1-208ENST00000485412 IGHV3-53P01767 116 aa9.45□□□□□ -0.9
SQSTM1-208ENST00000485412 PYYP10082 97 aa9.45□□□□□ -0.9
SQSTM1-208ENST00000485412 INPP1P49441 399 aa9.45□□□□□ -0.9
SQSTM1-208ENST00000485412 BCAP31P51572 246 aa9.45□□□□□ -0.9
SQSTM1-208ENST00000485412 FAM19A4Q96LR4 140 aa9.45□□□□□ -0.9
SQSTM1-208ENST00000485412 C18orf15Q96N68 181 aa9.45□□□□□ -0.9
SQSTM1-208ENST00000485412 AGPAT4-IT1Q9H0P7 198 aa9.45□□□□□ -0.9
SQSTM1-208ENST00000485412 FUT9Q9Y231 359 aa9.45□□□□□ -0.9
SQSTM1-208ENST00000485412 WDR83OSQ9Y284 106 aa9.45□□□□□ -0.9
SQSTM1-208ENST00000485412 TRBV19A0A075B6N1 114 aa9.44□□□□□ -0.9
SQSTM1-208ENST00000485412 IGKV2-40A0A087WW87 121 aaPredicted RBP9.44□□□□□ -0.9
SQSTM1-208ENST00000485412 UBE2L5PA0A1B0GUS4 154 aa9.44□□□□□ -0.9
SQSTM1-208ENST00000485412 KLLNB2CW77 178 aa9.44□□□□□ -0.9
SQSTM1-208ENST00000485412 IGKV2D-40P01614 121 aaPredicted RBP9.44□□□□□ -0.9
SQSTM1-208ENST00000485412 DNAH10OSP0CZ25 163 aa9.44□□□□□ -0.9
SQSTM1-208ENST00000485412 GCSAMLQ5JQS6 135 aa9.44□□□□□ -0.9
SQSTM1-208ENST00000485412 EXOC3-AS1Q8N2X6 119 aa9.44□□□□□ -0.9
SQSTM1-208ENST00000485412 SEC22CQ9BRL7 303 aa9.44□□□□□ -0.9
SQSTM1-208ENST00000485412 C20orf85Q9H1P6 137 aa9.44□□□□□ -0.9
SQSTM1-208ENST00000485412 RNF24Q9Y225 148 aa9.44□□□□□ -0.9
SQSTM1-208ENST00000485412 IGSF23A1L1A6 192 aa9.43□□□□□ -0.9
SQSTM1-208ENST00000485412 FAM25EA8MYX2 175 aa9.43□□□□□ -0.9
SQSTM1-208ENST00000485412 L7N2F9 121 aa9.43□□□□□ -0.9
SQSTM1-208ENST00000485412 NXPH4O95158 308 aa9.43□□□□□ -0.9
SQSTM1-208ENST00000485412 SMR3BP02814 79 aaPredicted RBP9.43□□□□□ -0.9
SQSTM1-208ENST00000485412 SLC25A5P05141 298 aaKnown RBP9.43□□□□□ -0.9
SQSTM1-208ENST00000485412 RNASE4P34096 147 aaKnown RBP9.43□□□□□ -0.9
SQSTM1-208ENST00000485412 CAV2P51636 162 aa9.43□□□□□ -0.9
SQSTM1-208ENST00000485412 VAMP2P63027 116 aa9.43□□□□□ -0.9
SQSTM1-208ENST00000485412 ICAM4Q14773 271 aa9.43□□□□□ -0.9
SQSTM1-208ENST00000485412 MZT2BQ6NZ67 158 aa9.43□□□□□ -0.9
SQSTM1-208ENST00000485412 SLC39A9Q9NUM3 307 aa9.43□□□□□ -0.9
SQSTM1-208ENST00000485412 UQCC1Q9NVA1 299 aa9.43□□□□□ -0.9
SQSTM1-208ENST00000485412 MRPL16Q9NX20 251 aaKnown RBP9.43□□□□□ -0.9
SQSTM1-208ENST00000485412 MDFICQ9P1T7 246 aa9.43□□□□□ -0.9
SQSTM1-208ENST00000485412 FAM229AH3BQW9 127 aa9.42□□□□□ -0.9
SQSTM1-208ENST00000485412 LYRM1O43325 122 aa9.42□□□□□ -0.9
SQSTM1-208ENST00000485412 SPINK4O60575 86 aa9.42□□□□□ -0.9
SQSTM1-208ENST00000485412 TCL1AP56279 114 aa9.42□□□□□ -0.9
SQSTM1-208ENST00000485412 KRTAP10-1P60331 282 aa9.42□□□□□ -0.9
SQSTM1-208ENST00000485412 GUK1Q16774 197 aa9.42□□□□□ -0.9
SQSTM1-208ENST00000485412 VWC2Q2TAL6 325 aa9.42□□□□□ -0.9
SQSTM1-208ENST00000485412 Q6ZRG5 221 aa9.42□□□□□ -0.9
SQSTM1-208ENST00000485412 EIF4E3Q8N5X7 224 aaKnown RBP9.42□□□□□ -0.9
SQSTM1-208ENST00000485412 ZFAND2AQ8N6M9 145 aa9.42□□□□□ -0.9
SQSTM1-208ENST00000485412 BLNKQ8WV28 456 aa9.42□□□□□ -0.9
SQSTM1-208ENST00000485412 VGLL1Q99990 258 aa9.42□□□□□ -0.9
SQSTM1-208ENST00000485412 TRAV6A0A075B6T7 132 aa9.41□□□□□ -0.9
SQSTM1-208ENST00000485412 CENPXA8MT69 81 aa9.41□□□□□ -0.9
SQSTM1-208ENST00000485412 J3QL48 77 aa9.41□□□□□ -0.9
SQSTM1-208ENST00000485412 ZNF253O75346 499 aa9.41□□□□□ -0.9
SQSTM1-208ENST00000485412 RPL29P47914 159 aaKnown RBP9.41□□□□□ -0.9
SQSTM1-208ENST00000485412 BAXQ07812 192 aa9.41□□□□□ -0.9
SQSTM1-208ENST00000485412 ANXA2RQ3ZCQ2 193 aa9.41□□□□□ -0.9
SQSTM1-208ENST00000485412 NFE4Q86UQ8 179 aa9.41□□□□□ -0.9
SQSTM1-208ENST00000485412 ZNF680Q8NEM1 530 aa9.41□□□□□ -0.9
SQSTM1-208ENST00000485412 OR1L4Q8NGR5 311 aa9.41□□□□□ -0.9
SQSTM1-208ENST00000485412 MRPL53Q96EL3 112 aaKnown RBP9.41□□□□□ -0.9
SQSTM1-208ENST00000485412 LINC00467Q9BRT7 94 aa9.41□□□□□ -0.9
SQSTM1-208ENST00000485412 A0A087WTM6 91 aa9.4□□□□□ -0.9
SQSTM1-208ENST00000485412 PAX4O43316 350 aa9.4□□□□□ -0.9
SQSTM1-208ENST00000485412 FGF7P21781 194 aa9.4□□□□□ -0.9
SQSTM1-208ENST00000485412 RAB31Q13636 194 aa9.4□□□□□ -0.9
SQSTM1-208ENST00000485412 FAM122CQ6P4D5 195 aa9.4□□□□□ -0.9
SQSTM1-208ENST00000485412 Q6ZSN1 163 aa9.4□□□□□ -0.9
SQSTM1-208ENST00000485412 Q8TAT8 98 aa9.4□□□□□ -0.9
SQSTM1-208ENST00000485412 ST6GAL2Q96JF0 529 aa9.4□□□□□ -0.9
SQSTM1-208ENST00000485412 FAM167A-AS1Q96KT0 104 aa9.4□□□□□ -0.9
SQSTM1-208ENST00000485412 C8orf49Q96NF6 230 aa9.4□□□□□ -0.9
SQSTM1-208ENST00000485412 PFDN5Q99471 154 aa9.4□□□□□ -0.9
SQSTM1-208ENST00000485412 SLC25A2Q9BXI2 301 aa9.4□□□□□ -0.9
SQSTM1-208ENST00000485412 TMEM14CQ9P0S9 112 aa9.4□□□□□ -0.9
SQSTM1-208ENST00000485412 ICOSQ9Y6W8 199 aa9.4□□□□□ -0.9
SQSTM1-208ENST00000485412 SRRM2Q9UQ35 2752 aaKnown RBP9.4□□□□□ -0.91
SQSTM1-208ENST00000485412 C5orf51A6NDU8 294 aa9.39□□□□□ -0.91
SQSTM1-208ENST00000485412 PRAF2O60831 178 aa9.39□□□□□ -0.91
SQSTM1-208ENST00000485412 MPDU1O75352 247 aa9.39□□□□□ -0.91
SQSTM1-208ENST00000485412 GPX1P07203 203 aa9.39□□□□□ -0.91
SQSTM1-208ENST00000485412 HIST1H1EP10412 219 aaKnown RBP9.39□□□□□ -0.91
SQSTM1-208ENST00000485412 CRISP2P16562 243 aa9.39□□□□□ -0.91
SQSTM1-208ENST00000485412 CRYBA4P53673 196 aa9.39□□□□□ -0.91
SQSTM1-208ENST00000485412 S100A10P60903 97 aa9.39□□□□□ -0.91
SQSTM1-208ENST00000485412 HAMPP81172 84 aa9.39□□□□□ -0.91
SQSTM1-208ENST00000485412 IL15RAQ13261 267 aa9.39□□□□□ -0.91
SQSTM1-208ENST00000485412 FHL2Q14192 279 aa9.39□□□□□ -0.91
SQSTM1-208ENST00000485412 LYPD5Q6UWN5 251 aa9.39□□□□□ -0.91
SQSTM1-208ENST00000485412 C9orf47Q6ZRZ4 202 aa9.39□□□□□ -0.91
SQSTM1-208ENST00000485412 TMEM252Q8N6L7 170 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms