RNA–Protein interactions for RNA: ENST00000483723.5

CLK3-204, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,749 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-204ENST00000483723 ACTL10Q5JWF8 245 aa10.61□□□□□ -0.71
CLK3-204ENST00000483723 SAMD13Q5VXD3 122 aa10.61□□□□□ -0.71
CLK3-204ENST00000483723 OR1N2Q8NGR9 330 aa10.61□□□□□ -0.71
CLK3-204ENST00000483723 GFRA4Q9GZZ7 299 aa10.61□□□□□ -0.71
CLK3-204ENST00000483723 C5orf52A6NGY3 159 aa10.61□□□□□ -0.71
CLK3-204ENST00000483723 C2orf70A6NJV1 201 aa10.61□□□□□ -0.71
CLK3-204ENST00000483723 HIST1H2BKO60814 126 aa10.61□□□□□ -0.71
CLK3-204ENST00000483723 HIST1H2BJP06899 126 aa10.61□□□□□ -0.71
CLK3-204ENST00000483723 TRGC1P0CF51 173 aa10.61□□□□□ -0.71
CLK3-204ENST00000483723 HIST1H2BOP23527 126 aa10.61□□□□□ -0.71
CLK3-204ENST00000483723 HIST1H2BBP33778 126 aa10.61□□□□□ -0.71
CLK3-204ENST00000483723 FOXA3P55318 350 aaPredicted RBP10.61□□□□□ -0.71
CLK3-204ENST00000483723 HIST1H2BDP58876 126 aa10.61□□□□□ -0.71
CLK3-204ENST00000483723 HIST1H2BCP62807 126 aa10.61□□□□□ -0.71
CLK3-204ENST00000483723 RPL19P84098 196 aaKnown RBP10.61□□□□□ -0.71
CLK3-204ENST00000483723 HIST2H2BEQ16778 126 aa10.61□□□□□ -0.71
CLK3-204ENST00000483723 COX19Q49B96 90 aa10.61□□□□□ -0.71
CLK3-204ENST00000483723 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.61□□□□□ -0.71
CLK3-204ENST00000483723 NUP35Q8NFH5 326 aa10.61□□□□□ -0.71
CLK3-204ENST00000483723 OR11H1Q8NG94 326 aa10.61□□□□□ -0.71
CLK3-204ENST00000483723 DCANP1Q8TF63 244 aa10.61□□□□□ -0.71
CLK3-204ENST00000483723 HIST1H2BHQ93079 126 aa10.61□□□□□ -0.71
CLK3-204ENST00000483723 HIST1H2BNQ99877 126 aa10.61□□□□□ -0.71
CLK3-204ENST00000483723 HIST1H2BMQ99879 126 aa10.61□□□□□ -0.71
CLK3-204ENST00000483723 OVOL1O14753 267 aa10.6□□□□□ -0.71
CLK3-204ENST00000483723 SLURP1P55000 103 aa10.6□□□□□ -0.71
CLK3-204ENST00000483723 ADAMTSL5Q6ZMM2 481 aa10.6□□□□□ -0.71
CLK3-204ENST00000483723 NEU1Q99519 415 aa10.6□□□□□ -0.71
CLK3-204ENST00000483723 GPR61Q9BZJ8 451 aa10.6□□□□□ -0.71
CLK3-204ENST00000483723 NAT8BQ9UHF3 227 aa10.6□□□□□ -0.71
CLK3-204ENST00000483723 FRMD6-AS1P0C7T7 363 aa10.59□□□□□ -0.71
CLK3-204ENST00000483723 CT45A10P0DMU9 189 aa10.59□□□□□ -0.71
CLK3-204ENST00000483723 ZNF138P52744 262 aa10.59□□□□□ -0.71
CLK3-204ENST00000483723 TCL1AP56279 114 aa10.59□□□□□ -0.71
CLK3-204ENST00000483723 RPL11P62913 178 aaKnown RBP10.59□□□□□ -0.71
CLK3-204ENST00000483723 DEFB136Q30KP8 78 aa10.59□□□□□ -0.71
CLK3-204ENST00000483723 RASL11AQ6T310 242 aa10.59□□□□□ -0.71
CLK3-204ENST00000483723 KLHL30-AS1Q8NEE0 82 aa10.59□□□□□ -0.71
CLK3-204ENST00000483723 Q8TAT8 98 aa10.59□□□□□ -0.71
CLK3-204ENST00000483723 GTSF1Q8WW33 167 aa10.59□□□□□ -0.71
CLK3-204ENST00000483723 DPF1Q92782 380 aa10.59□□□□□ -0.71
CLK3-204ENST00000483723 GNB1LQ9BYB4 327 aa10.59□□□□□ -0.71
CLK3-204ENST00000483723 LENEPQ9Y5L5 61 aa10.59□□□□□ -0.71
CLK3-204ENST00000483723 INAFM1C9JVW0 142 aa10.58□□□□□ -0.72
CLK3-204ENST00000483723 CD28P10747 220 aa10.58□□□□□ -0.72
CLK3-204ENST00000483723 ZNF80P51504 273 aaPredicted RBP10.58□□□□□ -0.72
CLK3-204ENST00000483723 SRSF2Q01130 221 aaKnown RBP10.58□□□□□ -0.72
CLK3-204ENST00000483723 FABP9Q0Z7S8 132 aa10.58□□□□□ -0.72
CLK3-204ENST00000483723 SMUG1Q53HV7 270 aa10.58□□□□□ -0.72
CLK3-204ENST00000483723 ZNF738Q8NE65 137 aa10.58□□□□□ -0.72
CLK3-204ENST00000483723 OR2D3Q8NGH3 330 aa10.58□□□□□ -0.72
CLK3-204ENST00000483723 LINC00477Q96M19 166 aa10.58□□□□□ -0.72
CLK3-204ENST00000483723 NDFIP1Q9BT67 221 aa10.58□□□□□ -0.72
CLK3-204ENST00000483723 TRAPPC1Q9Y5R8 145 aa10.58□□□□□ -0.72
CLK3-204ENST00000483723 F8P00451 2351 aa10.58□□□□□ -0.72
CLK3-204ENST00000483723 HIGD1CA8MV81 97 aa10.58□□□□□ -0.72
CLK3-204ENST00000483723 SH2D1AO60880 128 aa10.58□□□□□ -0.72
CLK3-204ENST00000483723 SNRPEP62304 92 aaKnown RBP10.58□□□□□ -0.72
CLK3-204ENST00000483723 FAM162BQ5T6X4 162 aa10.58□□□□□ -0.72
CLK3-204ENST00000483723 TMEM78Q5T7P6 136 aa10.58□□□□□ -0.72
CLK3-204ENST00000483723 K7EQG2 157 aa10.57□□□□□ -0.72
CLK3-204ENST00000483723 S100A6P06703 90 aa10.57□□□□□ -0.72
CLK3-204ENST00000483723 ID1P41134 155 aa10.57□□□□□ -0.72
CLK3-204ENST00000483723 RIPPLY3P57055 190 aa10.57□□□□□ -0.72
CLK3-204ENST00000483723 PROK1P58294 105 aa10.57□□□□□ -0.72
CLK3-204ENST00000483723 FHL3Q13643 280 aa10.57□□□□□ -0.72
CLK3-204ENST00000483723 WDR73Q6P4I2 378 aa10.57□□□□□ -0.72
CLK3-204ENST00000483723 TMEM136Q6ZRR5 245 aa10.57□□□□□ -0.72
CLK3-204ENST00000483723 DLX4Q92988 240 aaPredicted RBP10.57□□□□□ -0.72
CLK3-204ENST00000483723 MS4A6AQ9H2W1 248 aa10.57□□□□□ -0.72
CLK3-204ENST00000483723 PEMTQ9UBM1 199 aa10.57□□□□□ -0.72
CLK3-204ENST00000483723 HIVEP1P15822 2718 aa10.57□□□□□ -0.72
CLK3-204ENST00000483723 A0A1B0GXF2 115 aa10.56□□□□□ -0.72
CLK3-204ENST00000483723 FABP5P3A8MUU1 101 aa10.56□□□□□ -0.72
CLK3-204ENST00000483723 UBE2CO00762 179 aa10.56□□□□□ -0.72
CLK3-204ENST00000483723 KHDC1LQ5JSQ8 128 aa10.56□□□□□ -0.72
CLK3-204ENST00000483723 RBPMS2Q6ZRY4 209 aaKnown RBP10.56□□□□□ -0.72
CLK3-204ENST00000483723 ATP5L2Q7Z4Y8 100 aa10.56□□□□□ -0.72
CLK3-204ENST00000483723 ZNF575Q86XF7 245 aa10.56□□□□□ -0.72
CLK3-204ENST00000483723 OR9G4Q8NGQ1 327 aa10.56□□□□□ -0.72
CLK3-204ENST00000483723 SAV1Q9H4B6 383 aaPredicted RBP10.56□□□□□ -0.72
CLK3-204ENST00000483723 TSSC4Q9Y5U2 329 aaPredicted RBP10.56□□□□□ -0.72
CLK3-204ENST00000483723 HIVEP2P31629 2446 aa10.56□□□□□ -0.72
CLK3-204ENST00000483723 TEP1Q99973 2627 aaKnown RBP10.56□□□□□ -0.72
CLK3-204ENST00000483723 IGKV3-7A0A075B6H7 116 aa10.55□□□□□ -0.72
CLK3-204ENST00000483723 TRBV7-9A0A0J9YWB2 115 aa10.55□□□□□ -0.72
CLK3-204ENST00000483723 M0QZ24 198 aa10.55□□□□□ -0.72
CLK3-204ENST00000483723 SPINK4O60575 86 aa10.55□□□□□ -0.72
CLK3-204ENST00000483723 MT-ND6P03923 174 aa10.55□□□□□ -0.72
CLK3-204ENST00000483723 CSN3P07498 182 aa10.55□□□□□ -0.72
CLK3-204ENST00000483723 HOXA5P20719 270 aa10.55□□□□□ -0.72
CLK3-204ENST00000483723 OR8A1Q8NGG7 326 aa10.55□□□□□ -0.72
CLK3-204ENST00000483723 RAX2Q96IS3 184 aa10.55□□□□□ -0.72
CLK3-204ENST00000483723 FAM19A4Q96LR4 140 aa10.55□□□□□ -0.72
CLK3-204ENST00000483723 CITED2Q99967 270 aaPredicted RBP10.55□□□□□ -0.72
CLK3-204ENST00000483723 RNF114Q9Y508 228 aa10.55□□□□□ -0.72
CLK3-204ENST00000483723 SELENOKQ9Y6D0 94 aa10.55□□□□□ -0.72
CLK3-204ENST00000483723 SNURFLB1AK76 121 aa10.55□□□□□ -0.72
CLK3-204ENST00000483723 NDUFA6P56556 154 aa10.55□□□□□ -0.72
CLK3-204ENST00000483723 COA6Q5JTJ3 125 aaKnown RBP10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 119.3 ms