RNA–Protein interactions for RNA: ENST00000476391.5

HDAC1-206, Transcript of histone deacetylase 1, humanhuman

TSL 1 (best)

Gene HDAC1, Length 2,409 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-206ENST00000476391 NRGNQ92686 78 aa10.82□□□□□ -0.68
HDAC1-206ENST00000476391 RAXQ9Y2V3 346 aa10.82□□□□□ -0.68
HDAC1-206ENST00000476391 SCGB2A1O75556 95 aa10.81□□□□□ -0.68
HDAC1-206ENST00000476391 CEACAM4O75871 244 aa10.81□□□□□ -0.68
HDAC1-206ENST00000476391 GAS8-AS1O95177 125 aa10.81□□□□□ -0.68
HDAC1-206ENST00000476391 C5orf47Q569G3 176 aa10.81□□□□□ -0.68
HDAC1-206ENST00000476391 SRSF2Q01130 221 aaKnown RBP10.8□□□□□ -0.68
HDAC1-206ENST00000476391 CFAP54Q96N23 3096 aa10.8□□□□□ -0.68
HDAC1-206ENST00000476391 TM4SF5O14894 197 aa10.8□□□□□ -0.68
HDAC1-206ENST00000476391 EGR2P11161 476 aaPredicted RBP10.8□□□□□ -0.68
HDAC1-206ENST00000476391 C17orf77Q96MU5 243 aa10.8□□□□□ -0.68
HDAC1-206ENST00000476391 SVILO95425 2214 aa10.8□□□□□ -0.68
HDAC1-206ENST00000476391 DSCAMO60469 2012 aa10.8□□□□□ -0.68
HDAC1-206ENST00000476391 SCGB1D4Q6XE38 83 aa10.79□□□□□ -0.68
HDAC1-206ENST00000476391 C10orf126Q8N4M7 172 aa10.79□□□□□ -0.68
HDAC1-206ENST00000476391 INTS1Q8N201 2190 aaKnown RBP10.79□□□□□ -0.68
HDAC1-206ENST00000476391 IGKV3-15P01624 115 aa10.79□□□□□ -0.68
HDAC1-206ENST00000476391 IGHV1-2P23083 117 aa10.79□□□□□ -0.68
HDAC1-206ENST00000476391 CD40P25942 277 aa10.79□□□□□ -0.68
HDAC1-206ENST00000476391 LY6DQ14210 128 aa10.79□□□□□ -0.68
HDAC1-206ENST00000476391 MRPL23Q16540 153 aaKnown RBP10.79□□□□□ -0.68
HDAC1-206ENST00000476391 HCP5Q6MZN7 132 aa10.79□□□□□ -0.68
HDAC1-206ENST00000476391 SHANK2-AS3Q9BTD1 123 aa10.79□□□□□ -0.68
HDAC1-206ENST00000476391 ZNF815PA8K554 130 aa10.78□□□□□ -0.68
HDAC1-206ENST00000476391 Q6ZQT7 251 aa10.78□□□□□ -0.68
HDAC1-206ENST00000476391 LINC01600Q96MT4 127 aa10.78□□□□□ -0.68
HDAC1-206ENST00000476391 TTTY12Q9BZ98 90 aa10.78□□□□□ -0.68
HDAC1-206ENST00000476391 MSRB1Q9NZV6 116 aa10.78□□□□□ -0.68
HDAC1-206ENST00000476391 ZNRD1Q9P1U0 126 aa10.78□□□□□ -0.68
HDAC1-206ENST00000476391 M0R3E3 92 aa10.78□□□□□ -0.68
HDAC1-206ENST00000476391 LHBP01229 141 aa10.78□□□□□ -0.68
HDAC1-206ENST00000476391 IGLV2-23P01705 113 aa10.78□□□□□ -0.68
HDAC1-206ENST00000476391 CXCL12P48061 93 aa10.78□□□□□ -0.68
HDAC1-206ENST00000476391 ODF3Q96PU9 254 aa10.78□□□□□ -0.68
HDAC1-206ENST00000476391 CSDC2Q9Y534 153 aaKnown RBP10.78□□□□□ -0.68
HDAC1-206ENST00000476391 LY6G6EA0A0G2JKS1 128 aa10.77□□□□□ -0.68
HDAC1-206ENST00000476391 H3BRN7 92 aa10.77□□□□□ -0.68
HDAC1-206ENST00000476391 PDE6HQ13956 83 aa10.77□□□□□ -0.68
HDAC1-206ENST00000476391 C6orf15Q6UXA7 325 aaPredicted RBP10.77□□□□□ -0.68
HDAC1-206ENST00000476391 C15orf53Q8NAA6 179 aa10.77□□□□□ -0.68
HDAC1-206ENST00000476391 DNAJC30Q96LL9 226 aa10.77□□□□□ -0.68
HDAC1-206ENST00000476391 PRADC1Q9BSG0 188 aa10.77□□□□□ -0.68
HDAC1-206ENST00000476391 U3KQA8 63 aa10.77□□□□□ -0.68
HDAC1-206ENST00000476391 FAM186AA6NE01 2351 aa10.77□□□□□ -0.69
HDAC1-206ENST00000476391 LYZL6O75951 148 aa10.77□□□□□ -0.69
HDAC1-206ENST00000476391 VMA21Q3ZAQ7 101 aa10.77□□□□□ -0.69
HDAC1-206ENST00000476391 Q8N1Y9 231 aa10.77□□□□□ -0.69
HDAC1-206ENST00000476391 PRR25Q96S07 402 aa10.77□□□□□ -0.69
HDAC1-206ENST00000476391 ONECUT1Q9UBC0 465 aa10.77□□□□□ -0.69
HDAC1-206ENST00000476391 PRR14LQ5THK1 2151 aa10.76□□□□□ -0.69
HDAC1-206ENST00000476391 TRAV8-4A0A0B4J246 113 aa10.76□□□□□ -0.69
HDAC1-206ENST00000476391 C9JAW5 83 aa10.76□□□□□ -0.69
HDAC1-206ENST00000476391 COX6B1P14854 86 aa10.76□□□□□ -0.69
HDAC1-206ENST00000476391 HLA-DMBP28068 263 aa10.76□□□□□ -0.69
HDAC1-206ENST00000476391 RPL13AP40429 203 aaKnown RBP10.76□□□□□ -0.69
HDAC1-206ENST00000476391 ATP5J2P56134 94 aa10.76□□□□□ -0.69
HDAC1-206ENST00000476391 GATA1P15976 413 aaPredicted RBP10.76□□□□□ -0.69
HDAC1-206ENST00000476391 DTX2Q86UW9 622 aa10.76□□□□□ -0.69
HDAC1-206ENST00000476391 LINC01587Q99440 93 aa10.76□□□□□ -0.69
HDAC1-206ENST00000476391 ARFGEF3Q5TH69 2177 aa10.76□□□□□ -0.69
HDAC1-206ENST00000476391 MRPS12O15235 138 aaKnown RBP10.75□□□□□ -0.69
HDAC1-206ENST00000476391 CFC1BP0CG36 223 aa10.75□□□□□ -0.69
HDAC1-206ENST00000476391 CFC1P0CG37 223 aa10.75□□□□□ -0.69
HDAC1-206ENST00000476391 PRO1854Q9UHT4 67 aa10.75□□□□□ -0.69
HDAC1-206ENST00000476391 FRYQ5TBA9 3013 aa10.75□□□□□ -0.69
HDAC1-206ENST00000476391 IGHV3-21A0A0B4J1V1 117 aa10.75□□□□□ -0.69
HDAC1-206ENST00000476391 WT1P19544 449 aaPredicted RBP10.75□□□□□ -0.69
HDAC1-206ENST00000476391 IGFBP4P22692 258 aa10.75□□□□□ -0.69
HDAC1-206ENST00000476391 EFNA4P52798 201 aa10.75□□□□□ -0.69
HDAC1-206ENST00000476391 ZNF575Q86XF7 245 aa10.75□□□□□ -0.69
HDAC1-206ENST00000476391 PLEKHB2Q96CS7 222 aa10.75□□□□□ -0.69
HDAC1-206ENST00000476391 NEXN-AS1Q8NBZ9 246 aa10.74□□□□□ -0.69
HDAC1-206ENST00000476391 FAM57AQ8TBR7 257 aa10.74□□□□□ -0.69
HDAC1-206ENST00000476391 NTN5Q8WTR8 489 aaPredicted RBP10.74□□□□□ -0.69
HDAC1-206ENST00000476391 SDK1Q7Z5N4 2213 aa10.74□□□□□ -0.69
HDAC1-206ENST00000476391 MRGPRG-AS1Q2M3A8 158 aa10.74□□□□□ -0.69
HDAC1-206ENST00000476391 TDHQ8IZJ6 230 aa10.74□□□□□ -0.69
HDAC1-206ENST00000476391 VKORC1Q9BQB6 163 aa10.74□□□□□ -0.69
HDAC1-206ENST00000476391 HES7Q9BYE0 225 aa10.74□□□□□ -0.69
HDAC1-206ENST00000476391 K7ESF4 209 aa10.73□□□□□ -0.69
HDAC1-206ENST00000476391 TGFAP01135 160 aa10.73□□□□□ -0.69
HDAC1-206ENST00000476391 NRACQ8N912 160 aa10.73□□□□□ -0.69
HDAC1-206ENST00000476391 PSMG3-AS1Q96PY0 264 aa10.73□□□□□ -0.69
HDAC1-206ENST00000476391 PLXNB1O43157 2135 aa10.73□□□□□ -0.69
HDAC1-206ENST00000476391 SPTBN5Q9NRC6 3674 aaKnown RBP10.73□□□□□ -0.69
HDAC1-206ENST00000476391 TRAV2A0A0B4J234 112 aa10.73□□□□□ -0.69
HDAC1-206ENST00000476391 A0A0J9YY99 117 aa10.73□□□□□ -0.69
HDAC1-206ENST00000476391 CEP290O15078 2479 aa10.73□□□□□ -0.69
HDAC1-206ENST00000476391 DUSP14O95147 198 aaKnown RBP10.73□□□□□ -0.69
HDAC1-206ENST00000476391 CECR9P0C854 216 aa10.73□□□□□ -0.69
HDAC1-206ENST00000476391 SLC25A16P16260 332 aa10.73□□□□□ -0.69
HDAC1-206ENST00000476391 RPL27AP46776 148 aaKnown RBP10.73□□□□□ -0.69
HDAC1-206ENST00000476391 DUX4L9Q6RFH8 374 aaPredicted RBP10.73□□□□□ -0.69
HDAC1-206ENST00000476391 IL17RELQ6ZVW7 336 aa10.73□□□□□ -0.69
HDAC1-206ENST00000476391 TPSG1Q9NRR2 321 aa10.73□□□□□ -0.69
HDAC1-206ENST00000476391 WDR87Q6ZQQ6 2873 aa10.72□□□□□ -0.69
HDAC1-206ENST00000476391 P0DMU3 169 aa10.72□□□□□ -0.69
HDAC1-206ENST00000476391 FAM231AP0DMU4 169 aa10.72□□□□□ -0.69
HDAC1-206ENST00000476391 FAM231CP0DMU5 169 aa10.72□□□□□ -0.69
HDAC1-206ENST00000476391 PRB4P10163 310 aaPredicted RBP10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 120 ms