RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 TMEM88Q6PEY1 159 aa11.91□□□□□ -0.5
HMGN4-201ENST00000377575 C9orf47Q6ZRZ4 202 aa11.91□□□□□ -0.5
HMGN4-201ENST00000377575 POM121L12Q8N7R1 296 aa11.91□□□□□ -0.5
HMGN4-201ENST00000377575 PHYHIPLQ96FC7 376 aa11.91□□□□□ -0.5
HMGN4-201ENST00000377575 PYGO2Q9BRQ0 406 aa11.91□□□□□ -0.5
HMGN4-201ENST00000377575 WFDC1Q9HC57 220 aa11.91□□□□□ -0.5
HMGN4-201ENST00000377575 FRAS1Q86XX4 4008 aa11.9□□□□□ -0.5
HMGN4-201ENST00000377575 IGKV2-40A0A087WW87 121 aaPredicted RBP11.9□□□□□ -0.5
HMGN4-201ENST00000377575 C7orf71A4D174 169 aa11.9□□□□□ -0.5
HMGN4-201ENST00000377575 IGKV2D-40P01614 121 aaPredicted RBP11.9□□□□□ -0.5
HMGN4-201ENST00000377575 CSN1S1P47710 185 aa11.9□□□□□ -0.5
HMGN4-201ENST00000377575 UBE2DNLQ8IWF7 75 aa11.9□□□□□ -0.5
HMGN4-201ENST00000377575 LYPD1Q8N2G4 141 aa11.9□□□□□ -0.5
HMGN4-201ENST00000377575 C15orf53Q8NAA6 179 aa11.9□□□□□ -0.5
HMGN4-201ENST00000377575 AGPAT4-IT1Q9H0P7 198 aa11.9□□□□□ -0.5
HMGN4-201ENST00000377575 NOP10Q9NPE3 64 aaKnown RBP11.9□□□□□ -0.5
HMGN4-201ENST00000377575 SNURFLB1AK76 121 aa11.89□□□□□ -0.51
HMGN4-201ENST00000377575 KLLNB2CW77 178 aa11.89□□□□□ -0.51
HMGN4-201ENST00000377575 ATP5G1P05496 136 aa11.89□□□□□ -0.51
HMGN4-201ENST00000377575 GIPP09681 153 aaPredicted RBP11.89□□□□□ -0.51
HMGN4-201ENST00000377575 M6PRP20645 277 aa11.89□□□□□ -0.51
HMGN4-201ENST00000377575 ATP5G3P48201 142 aa11.89□□□□□ -0.51
HMGN4-201ENST00000377575 ZNF503Q96F45 646 aa11.89□□□□□ -0.51
HMGN4-201ENST00000377575 FAM19A4Q96LR4 140 aa11.89□□□□□ -0.51
HMGN4-201ENST00000377575 AQP10Q96PS8 301 aa11.89□□□□□ -0.51
HMGN4-201ENST00000377575 A0A1W2PPV4 95 aa11.88□□□□□ -0.51
HMGN4-201ENST00000377575 CBY3A6NI87 242 aa11.88□□□□□ -0.51
HMGN4-201ENST00000377575 GPX1P07203 203 aa11.88□□□□□ -0.51
HMGN4-201ENST00000377575 NMBP08949 121 aa11.88□□□□□ -0.51
HMGN4-201ENST00000377575 CRISP2P16562 243 aa11.88□□□□□ -0.51
HMGN4-201ENST00000377575 RANP62826 216 aaKnown RBP11.88□□□□□ -0.51
HMGN4-201ENST00000377575 RGS21Q2M5E4 152 aa11.88□□□□□ -0.51
HMGN4-201ENST00000377575 PQLC2Q6ZP29 291 aa11.88□□□□□ -0.51
HMGN4-201ENST00000377575 ZNF680Q8NEM1 530 aa11.88□□□□□ -0.51
HMGN4-201ENST00000377575 Q9H3A6 140 aa11.88□□□□□ -0.51
HMGN4-201ENST00000377575 RBAKDNA6NC62 111 aa11.87□□□□□ -0.51
HMGN4-201ENST00000377575 F5H768 121 aa11.87□□□□□ -0.51
HMGN4-201ENST00000377575 BTN1A1Q13410 526 aa11.87□□□□□ -0.51
HMGN4-201ENST00000377575 VGLL1Q99990 258 aa11.87□□□□□ -0.51
HMGN4-201ENST00000377575 ZNF492Q9P255 531 aa11.87□□□□□ -0.51
HMGN4-201ENST00000377575 TRBV7-9A0A0J9YWB2 115 aa11.86□□□□□ -0.51
HMGN4-201ENST00000377575 RNASE4P34096 147 aaKnown RBP11.86□□□□□ -0.51
HMGN4-201ENST00000377575 ZNF138P52744 262 aa11.86□□□□□ -0.51
HMGN4-201ENST00000377575 RAB2AP61019 212 aa11.86□□□□□ -0.51
HMGN4-201ENST00000377575 FAM74A1Q5RGS3 127 aa11.86□□□□□ -0.51
HMGN4-201ENST00000377575 INO80EQ8NBZ0 244 aaPredicted RBP11.86□□□□□ -0.51
HMGN4-201ENST00000377575 LINC00467Q9BRT7 94 aa11.86□□□□□ -0.51
HMGN4-201ENST00000377575 PSMG3Q9BT73 122 aaPredicted RBP11.86□□□□□ -0.51
HMGN4-201ENST00000377575 ZNF324O75467 553 aaPredicted RBP11.85□□□□□ -0.51
HMGN4-201ENST00000377575 CD300CQ08708 224 aa11.85□□□□□ -0.51
HMGN4-201ENST00000377575 RNF212Q495C1 297 aa11.85□□□□□ -0.51
HMGN4-201ENST00000377575 EIF4E3Q8N5X7 224 aaKnown RBP11.85□□□□□ -0.51
HMGN4-201ENST00000377575 ZFAND2AQ8N6M9 145 aa11.85□□□□□ -0.51
HMGN4-201ENST00000377575 LINC00612Q8N6U2 182 aa11.85□□□□□ -0.51
HMGN4-201ENST00000377575 HSD17B11Q8NBQ5 300 aa11.85□□□□□ -0.51
HMGN4-201ENST00000377575 OR10G4Q8NGN3 311 aa11.85□□□□□ -0.51
HMGN4-201ENST00000377575 OR10G9Q8NGN4 311 aa11.85□□□□□ -0.51
HMGN4-201ENST00000377575 OR10G7Q8NGN6 311 aa11.85□□□□□ -0.51
HMGN4-201ENST00000377575 OR2G3Q8NGZ4 309 aa11.85□□□□□ -0.51
HMGN4-201ENST00000377575 RXFP4Q8TDU9 374 aa11.85□□□□□ -0.51
HMGN4-201ENST00000377575 OTORQ9NRC9 128 aa11.85□□□□□ -0.51
HMGN4-201ENST00000377575 BIRC6Q9NR09 4857 aa11.84□□□□□ -0.51
HMGN4-201ENST00000377575 CDC34P49427 236 aaPredicted RBP11.84□□□□□ -0.51
HMGN4-201ENST00000377575 DAZ2Q13117 558 aaKnown RBP11.84□□□□□ -0.51
HMGN4-201ENST00000377575 ANXA2RQ3ZCQ2 193 aa11.84□□□□□ -0.51
HMGN4-201ENST00000377575 Q8TAT8 98 aa11.84□□□□□ -0.51
HMGN4-201ENST00000377575 CMTM2Q8TAZ6 248 aa11.84□□□□□ -0.51
HMGN4-201ENST00000377575 NACAE9PAV3 2078 aa11.83□□□□□ -0.51
HMGN4-201ENST00000377575 FXYD6-FXYD2A0A087WZ82 144 aa11.83□□□□□ -0.52
HMGN4-201ENST00000377575 DIRC3C9JPN6 131 aa11.83□□□□□ -0.52
HMGN4-201ENST00000377575 RGS13O14921 159 aa11.83□□□□□ -0.52
HMGN4-201ENST00000377575 EIF3GO75821 320 aaKnown RBP eCLIP11.83□□□□□ -0.52
HMGN4-201ENST00000377575 MBP02144 154 aa11.83□□□□□ -0.52
HMGN4-201ENST00000377575 HYLS1Q96M11 299 aa11.83□□□□□ -0.52
HMGN4-201ENST00000377575 DNAH10Q8IVF4 4471 aa11.83□□□□□ -0.52
HMGN4-201ENST00000377575 GAGE12BA1L429 117 aa11.82□□□□□ -0.52
HMGN4-201ENST00000377575 GAGE7O76087 117 aa11.82□□□□□ -0.52
HMGN4-201ENST00000377575 GAGE12FP0CL80 117 aa11.82□□□□□ -0.52
HMGN4-201ENST00000377575 GAGE12GP0CL81 117 aa11.82□□□□□ -0.52
HMGN4-201ENST00000377575 GAGE12IP0CL82 117 aa11.82□□□□□ -0.52
HMGN4-201ENST00000377575 ATP6V0CP27449 155 aa11.82□□□□□ -0.52
HMGN4-201ENST00000377575 SERF2P84101 59 aa11.82□□□□□ -0.52
HMGN4-201ENST00000377575 Q5BKY6 102 aa11.82□□□□□ -0.52
HMGN4-201ENST00000377575 PRR9Q5T870 116 aa11.82□□□□□ -0.52
HMGN4-201ENST00000377575 OR2T35Q8NGX2 323 aa11.82□□□□□ -0.52
HMGN4-201ENST00000377575 ARPC5LQ9BPX5 153 aa11.82□□□□□ -0.52
HMGN4-201ENST00000377575 ATG101Q9BSB4 218 aa11.82□□□□□ -0.52
HMGN4-201ENST00000377575 LENEPQ9Y5L5 61 aa11.82□□□□□ -0.52
HMGN4-201ENST00000377575 BORCS7-ASMTA0A0B4J1R7 106 aa11.81□□□□□ -0.52
HMGN4-201ENST00000377575 PGPA6NDG6 321 aa11.81□□□□□ -0.52
HMGN4-201ENST00000377575 HMGB3O15347 200 aaKnown RBP11.81□□□□□ -0.52
HMGN4-201ENST00000377575 NUDT3O95989 172 aa11.81□□□□□ -0.52
HMGN4-201ENST00000377575 ARL14EPLP0DKL9 152 aa11.81□□□□□ -0.52
HMGN4-201ENST00000377575 FAM3BP58499 235 aaPredicted RBP11.81□□□□□ -0.52
HMGN4-201ENST00000377575 IBA57Q5T440 356 aaKnown RBP11.81□□□□□ -0.52
HMGN4-201ENST00000377575 C11orf72Q8NBR9 251 aa11.81□□□□□ -0.52
HMGN4-201ENST00000377575 TMED6Q8WW62 240 aa11.81□□□□□ -0.52
HMGN4-201ENST00000377575 GSN-AS1Q9NRJ2 163 aa11.81□□□□□ -0.52
HMGN4-201ENST00000377575 RPH3ALQ9UNE2 315 aa11.81□□□□□ -0.52
HMGN4-201ENST00000377575 TNFSF18Q9UNG2 199 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms