RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 ICAM4Q14773 271 aa15.21■□□□□ 0.03
CCDC28B-201ENST00000373602 C9orf47Q6ZRZ4 202 aa15.21■□□□□ 0.03
CCDC28B-201ENST00000373602 FUT9Q9Y231 359 aa15.21■□□□□ 0.03
CCDC28B-201ENST00000373602 A0A1B0GVY2 172 aa15.2■□□□□ 0.02
CCDC28B-201ENST00000373602 C7orf71A4D174 169 aa15.2■□□□□ 0.02
CCDC28B-201ENST00000373602 SNURFLB1AK76 121 aa15.2■□□□□ 0.02
CCDC28B-201ENST00000373602 FXYD5Q96DB9 178 aa15.2■□□□□ 0.02
CCDC28B-201ENST00000373602 PAXXQ9BUH6 204 aa15.2■□□□□ 0.02
CCDC28B-201ENST00000373602 PRSS29PA6NIE9 313 aa15.19■□□□□ 0.02
CCDC28B-201ENST00000373602 NUDT3O95989 172 aa15.19■□□□□ 0.02
CCDC28B-201ENST00000373602 RNF141Q8WVD5 230 aa15.19■□□□□ 0.02
CCDC28B-201ENST00000373602 ATG101Q9BSB4 218 aa15.19■□□□□ 0.02
CCDC28B-201ENST00000373602 BATF3Q9NR55 127 aa15.19■□□□□ 0.02
CCDC28B-201ENST00000373602 IGKV2-40A0A087WW87 121 aaPredicted RBP15.18■□□□□ 0.02
CCDC28B-201ENST00000373602 ZNF324O75467 553 aaPredicted RBP15.18■□□□□ 0.02
CCDC28B-201ENST00000373602 IGKV2D-40P01614 121 aaPredicted RBP15.18■□□□□ 0.02
CCDC28B-201ENST00000373602 CRISP2P16562 243 aa15.18■□□□□ 0.02
CCDC28B-201ENST00000373602 RPL12P30050 165 aaKnown RBP15.18■□□□□ 0.02
CCDC28B-201ENST00000373602 CD300CQ08708 224 aa15.18■□□□□ 0.02
CCDC28B-201ENST00000373602 FAM122CQ6P4D5 195 aa15.18■□□□□ 0.02
CCDC28B-201ENST00000373602 LINC00467Q9BRT7 94 aa15.18■□□□□ 0.02
CCDC28B-201ENST00000373602 MBD2Q9UBB5 411 aa15.18■□□□□ 0.02
CCDC28B-201ENST00000373602 GAGE12BA1L429 117 aa15.17■□□□□ 0.02
CCDC28B-201ENST00000373602 GAGE7O76087 117 aa15.17■□□□□ 0.02
CCDC28B-201ENST00000373602 NMBP08949 121 aa15.17■□□□□ 0.02
CCDC28B-201ENST00000373602 OR10J4P0C629 311 aa15.17■□□□□ 0.02
CCDC28B-201ENST00000373602 GAGE12FP0CL80 117 aa15.17■□□□□ 0.02
CCDC28B-201ENST00000373602 GAGE12GP0CL81 117 aa15.17■□□□□ 0.02
CCDC28B-201ENST00000373602 GAGE12IP0CL82 117 aa15.17■□□□□ 0.02
CCDC28B-201ENST00000373602 DAZ2Q13117 558 aaKnown RBP15.17■□□□□ 0.02
CCDC28B-201ENST00000373602 BTN1A1Q13410 526 aa15.17■□□□□ 0.02
CCDC28B-201ENST00000373602 ZNF503Q96F45 646 aa15.17■□□□□ 0.02
CCDC28B-201ENST00000373602 VGLL1Q99990 258 aa15.17■□□□□ 0.02
CCDC28B-201ENST00000373602 IFNA5P01569 189 aa15.16■□□□□ 0.02
CCDC28B-201ENST00000373602 RNASE4P34096 147 aaKnown RBP15.16■□□□□ 0.02
CCDC28B-201ENST00000373602 FFAR4Q5NUL3 377 aa15.16■□□□□ 0.02
CCDC28B-201ENST00000373602 TMEM78Q5T7P6 136 aa15.16■□□□□ 0.02
CCDC28B-201ENST00000373602 ZNF680Q8NEM1 530 aa15.16■□□□□ 0.02
CCDC28B-201ENST00000373602 SCGB1C1Q8TD33 95 aa15.16■□□□□ 0.02
CCDC28B-201ENST00000373602 PHYHIPLQ96FC7 376 aa15.16■□□□□ 0.02
CCDC28B-201ENST00000373602 SMIM3Q9BZL3 60 aa15.16■□□□□ 0.02
CCDC28B-201ENST00000373602 OR7C2O60412 319 aa15.15■□□□□ 0.02
CCDC28B-201ENST00000373602 GPX1P07203 203 aa15.15■□□□□ 0.02
CCDC28B-201ENST00000373602 OR5I1Q13606 314 aa15.15■□□□□ 0.02
CCDC28B-201ENST00000373602 ANXA2RQ3ZCQ2 193 aa15.15■□□□□ 0.02
CCDC28B-201ENST00000373602 EIF4E3Q8N5X7 224 aaKnown RBP15.15■□□□□ 0.02
CCDC28B-201ENST00000373602 ZFAND2AQ8N6M9 145 aa15.15■□□□□ 0.02
CCDC28B-201ENST00000373602 C11orf72Q8NBR9 251 aa15.15■□□□□ 0.02
CCDC28B-201ENST00000373602 ZNF492Q9P255 531 aa15.15■□□□□ 0.02
CCDC28B-201ENST00000373602 HOXA5P20719 270 aa15.14■□□□□ 0.01
CCDC28B-201ENST00000373602 CCL18P55774 89 aa15.14■□□□□ 0.01
CCDC28B-201ENST00000373602 Q6ZTI0 123 aa15.14■□□□□ 0.01
CCDC28B-201ENST00000373602 LYPD1Q8N2G4 141 aa15.14■□□□□ 0.01
CCDC28B-201ENST00000373602 ZNRF2Q8NHG8 242 aa15.14■□□□□ 0.01
CCDC28B-201ENST00000373602 GSN-AS1Q9NRJ2 163 aa15.14■□□□□ 0.01
CCDC28B-201ENST00000373602 TRAV26-1A0A087WT03 109 aa15.13■□□□□ 0.01
CCDC28B-201ENST00000373602 M6PRP20645 277 aa15.13■□□□□ 0.01
CCDC28B-201ENST00000373602 RANP62826 216 aaKnown RBP15.13■□□□□ 0.01
CCDC28B-201ENST00000373602 SOHLH1Q5JUK2 328 aa15.13■□□□□ 0.01
CCDC28B-201ENST00000373602 PRR9Q5T870 116 aa15.13■□□□□ 0.01
CCDC28B-201ENST00000373602 C1orf134Q5TEV5 83 aa15.13■□□□□ 0.01
CCDC28B-201ENST00000373602 GNPNAT1Q96EK6 184 aaPredicted RBP15.13■□□□□ 0.01
CCDC28B-201ENST00000373602 WFDC1Q9HC57 220 aa15.13■□□□□ 0.01
CCDC28B-201ENST00000373602 LINC00588Q9Y4M8 146 aa15.13■□□□□ 0.01
CCDC28B-201ENST00000373602 TRBV7-9A0A0J9YWB2 115 aa15.12■□□□□ 0.01
CCDC28B-201ENST00000373602 ZNF138P52744 262 aa15.12■□□□□ 0.01
CCDC28B-201ENST00000373602 TAS2R45P59539 299 aa15.12■□□□□ 0.01
CCDC28B-201ENST00000373602 UBE2L3P68036 154 aaKnown RBP15.12■□□□□ 0.01
CCDC28B-201ENST00000373602 KHDC3LQ587J8 217 aa15.12■□□□□ 0.01
CCDC28B-201ENST00000373602 RXFP4Q8TDU9 374 aa15.12■□□□□ 0.01
CCDC28B-201ENST00000373602 Q9H3A6 140 aa15.12■□□□□ 0.01
CCDC28B-201ENST00000373602 ALG5Q9Y673 324 aa15.12■□□□□ 0.01
CCDC28B-201ENST00000373602 RBAKDNA6NC62 111 aa15.11■□□□□ 0.01
CCDC28B-201ENST00000373602 CSN1S1P47710 185 aa15.11■□□□□ 0.01
CCDC28B-201ENST00000373602 C18orf15Q96N68 181 aa15.11■□□□□ 0.01
CCDC28B-201ENST00000373602 TMPRSS5Q9H3S3 457 aa15.11■□□□□ 0.01
CCDC28B-201ENST00000373602 A0A0J9YY99 117 aa15.1■□□□□ 0.01
CCDC28B-201ENST00000373602 H3BNG1 76 aa15.1■□□□□ 0.01
CCDC28B-201ENST00000373602 TCL1AP56279 114 aa15.1■□□□□ 0.01
CCDC28B-201ENST00000373602 Q8TAT8 98 aa15.1■□□□□ 0.01
CCDC28B-201ENST00000373602 IGHV1OR15-1A0A075B7D0 117 aa15.09■□□□□ 0.01
CCDC28B-201ENST00000373602 NBDYA0A0U1RRE5 68 aa15.09■□□□□ 0.01
CCDC28B-201ENST00000373602 RGS13O14921 159 aa15.09■□□□□ 0.01
CCDC28B-201ENST00000373602 IBA57Q5T440 356 aaKnown RBP15.09■□□□□ 0.01
CCDC28B-201ENST00000373602 Q6ZQT7 251 aa15.09■□□□□ 0.01
CCDC28B-201ENST00000373602 SSX7Q7RTT5 188 aa15.09■□□□□ 0.01
CCDC28B-201ENST00000373602 KLF12Q9Y4X4 402 aa15.09■□□□□ 0.01
CCDC28B-201ENST00000373602 TRGV2A0A075B6R0 118 aa15.08■□□□□ 0
CCDC28B-201ENST00000373602 TRGV1A0A0A0MS02 117 aa15.08■□□□□ 0
CCDC28B-201ENST00000373602 SPINK4O60575 86 aa15.08■□□□□ 0
CCDC28B-201ENST00000373602 ACOT6Q3I5F7 207 aaPredicted RBP15.08■□□□□ 0
CCDC28B-201ENST00000373602 TP53TG3Q9ULZ0 132 aa15.08■□□□□ 0
CCDC28B-201ENST00000373602 HERC2O95714 4834 aa15.08■□□□□ 0
CCDC28B-201ENST00000373602 DIRC3C9JPN6 131 aa15.07■□□□□ 0
CCDC28B-201ENST00000373602 EIF3GO75821 320 aaKnown RBP eCLIP15.07■□□□□ 0
CCDC28B-201ENST00000373602 PTTG1O95997 202 aa15.07■□□□□ 0
CCDC28B-201ENST00000373602 ZNF266Q14584 549 aa15.06■□□□□ 0
CCDC28B-201ENST00000373602 OTORQ9NRC9 128 aa15.06■□□□□ 0
CCDC28B-201ENST00000373602 DNAH11Q96DT5 4516 aa15.05■□□□□ 0
CCDC28B-201ENST00000373602 A0A1W2PPV4 95 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms