RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 HIST1H4GQ99525 98 aa5.3□□□□□ -1.56
VPS39-202ENST00000348544 KALRNO60229 2985 aa5.29□□□□□ -1.56
VPS39-202ENST00000348544 IL4P05112 153 aa5.29□□□□□ -1.56
VPS39-202ENST00000348544 XGP55808 180 aa5.29□□□□□ -1.56
VPS39-202ENST00000348544 CFAP126Q5VTH2 177 aa5.29□□□□□ -1.56
VPS39-202ENST00000348544 GLMPQ8WWB7 406 aa5.29□□□□□ -1.56
VPS39-202ENST00000348544 RNF125Q96EQ8 232 aa5.29□□□□□ -1.56
VPS39-202ENST00000348544 ZNF48Q96MX3 618 aaPredicted RBP5.29□□□□□ -1.56
VPS39-202ENST00000348544 C1QTNF4Q9BXJ3 329 aa5.29□□□□□ -1.56
VPS39-202ENST00000348544 NXT2Q9NPJ8 142 aaKnown RBP5.29□□□□□ -1.56
VPS39-202ENST00000348544 S4R3C0 116 aa5.29□□□□□ -1.56
VPS39-202ENST00000348544 MALRD1Q5VYJ5 2156 aa5.29□□□□□ -1.56
VPS39-202ENST00000348544 ZZEF1O43149 2961 aa5.29□□□□□ -1.56
VPS39-202ENST00000348544 LINC01548A6NM66 108 aa5.29□□□□□ -1.56
VPS39-202ENST00000348544 ATP5LO75964 103 aa5.29□□□□□ -1.56
VPS39-202ENST00000348544 TSPAN13O95857 204 aa5.29□□□□□ -1.56
VPS39-202ENST00000348544 SPINK8P0C7L1 97 aa5.29□□□□□ -1.56
VPS39-202ENST00000348544 PPP1R27Q86WC6 154 aa5.29□□□□□ -1.56
VPS39-202ENST00000348544 PRSS33Q8NF86 280 aa5.29□□□□□ -1.56
VPS39-202ENST00000348544 TMEM190Q8WZ59 177 aa5.29□□□□□ -1.56
VPS39-202ENST00000348544 CNFNQ9BYD5 112 aa5.29□□□□□ -1.56
VPS39-202ENST00000348544 FBXL15Q9H469 300 aa5.29□□□□□ -1.56
VPS39-202ENST00000348544 CTSZQ9UBR2 303 aa5.29□□□□□ -1.56
VPS39-202ENST00000348544 MUC3AQ02505 3323 aa5.28□□□□□ -1.56
VPS39-202ENST00000348544 LOXP28300 417 aaPredicted RBP5.28□□□□□ -1.56
VPS39-202ENST00000348544 KLRD1Q13241 179 aa5.28□□□□□ -1.56
VPS39-202ENST00000348544 SRSF6Q13247 344 aaKnown RBP5.28□□□□□ -1.56
VPS39-202ENST00000348544 IGFL4Q6B9Z1 124 aa5.28□□□□□ -1.56
VPS39-202ENST00000348544 Q6ZUT4 128 aa5.28□□□□□ -1.56
VPS39-202ENST00000348544 AAMDCQ9H7C9 122 aa5.28□□□□□ -1.56
VPS39-202ENST00000348544 NDUFA3O95167 84 aa5.28□□□□□ -1.56
VPS39-202ENST00000348544 IGHG4P01861 327 aa5.28□□□□□ -1.56
VPS39-202ENST00000348544 IGHV1-8P0DP01 117 aa5.28□□□□□ -1.56
VPS39-202ENST00000348544 HLA-DMBP28068 263 aa5.28□□□□□ -1.56
VPS39-202ENST00000348544 Q8N8P6 123 aa5.28□□□□□ -1.56
VPS39-202ENST00000348544 PTH2Q96A98 100 aa5.28□□□□□ -1.56
VPS39-202ENST00000348544 RNF183Q96D59 192 aa5.28□□□□□ -1.56
VPS39-202ENST00000348544 GPR179Q6PRD1 2367 aa5.28□□□□□ -1.56
VPS39-202ENST00000348544 ROS1P08922 2347 aa5.27□□□□□ -1.57
VPS39-202ENST00000348544 ZDBF2Q9HCK1 2354 aa5.27□□□□□ -1.57
VPS39-202ENST00000348544 TECTAO75443 2155 aa5.27□□□□□ -1.57
VPS39-202ENST00000348544 A0A087WX48 190 aa5.27□□□□□ -1.57
VPS39-202ENST00000348544 CD40P25942 277 aa5.27□□□□□ -1.57
VPS39-202ENST00000348544 EFNA4P52798 201 aa5.27□□□□□ -1.57
VPS39-202ENST00000348544 PDE6HQ13956 83 aa5.27□□□□□ -1.57
VPS39-202ENST00000348544 TMEM155Q4W5P6 130 aa5.27□□□□□ -1.57
VPS39-202ENST00000348544 DTX2Q86UW9 622 aa5.27□□□□□ -1.57
VPS39-202ENST00000348544 ATP6V0E2Q8NHE4 81 aa5.27□□□□□ -1.57
VPS39-202ENST00000348544 CARD19Q96LW7 228 aa5.27□□□□□ -1.57
VPS39-202ENST00000348544 PGPEP1Q9NXJ5 209 aa5.27□□□□□ -1.57
VPS39-202ENST00000348544 CYSLTR1Q9Y271 337 aa5.27□□□□□ -1.57
VPS39-202ENST00000348544 TNFRSF13BO14836 293 aaPredicted RBP5.27□□□□□ -1.57
VPS39-202ENST00000348544 ORM1P02763 201 aa5.27□□□□□ -1.57
VPS39-202ENST00000348544 TRGV3P03979 118 aa5.27□□□□□ -1.57
VPS39-202ENST00000348544 LINC01559Q495D7 138 aa5.27□□□□□ -1.57
VPS39-202ENST00000348544 FDCSPQ8NFU4 85 aa5.27□□□□□ -1.57
VPS39-202ENST00000348544 DMXL2Q8TDJ6 3036 aa5.27□□□□□ -1.57
VPS39-202ENST00000348544 TRAV26-2A0A0B4J265 109 aa5.26□□□□□ -1.57
VPS39-202ENST00000348544 IGHV1-3A0A0C4DH29 117 aa5.26□□□□□ -1.57
VPS39-202ENST00000348544 LINC01619G3V211 115 aa5.26□□□□□ -1.57
VPS39-202ENST00000348544 PLGLAQ15195 96 aa5.26□□□□□ -1.57
VPS39-202ENST00000348544 SFTA2Q6UW10 78 aa5.26□□□□□ -1.57
VPS39-202ENST00000348544 Q6ZS92 163 aa5.26□□□□□ -1.57
VPS39-202ENST00000348544 NRACQ8N912 160 aa5.26□□□□□ -1.57
VPS39-202ENST00000348544 MBD3L4A6NDZ8 208 aaPredicted RBP5.26□□□□□ -1.57
VPS39-202ENST00000348544 MBD3L3A6NE82 208 aaPredicted RBP5.26□□□□□ -1.57
VPS39-202ENST00000348544 MBD3L5A6NJ08 208 aaPredicted RBP5.26□□□□□ -1.57
VPS39-202ENST00000348544 NCBP2LA6PVI3 153 aaKnown RBP5.26□□□□□ -1.57
VPS39-202ENST00000348544 TMEM178BH3BS89 294 aa5.26□□□□□ -1.57
VPS39-202ENST00000348544 HOXA3O43365 443 aaPredicted RBP5.26□□□□□ -1.57
VPS39-202ENST00000348544 NDUFB3O43676 98 aa5.26□□□□□ -1.57
VPS39-202ENST00000348544 LGALS1P09382 135 aaKnown RBP5.26□□□□□ -1.57
VPS39-202ENST00000348544 C5orf64Q2M2E5 130 aa5.26□□□□□ -1.57
VPS39-202ENST00000348544 GFRALQ6UXV0 394 aa5.26□□□□□ -1.57
VPS39-202ENST00000348544 ZFP2Q6ZN57 461 aa5.26□□□□□ -1.57
VPS39-202ENST00000348544 MBD3L2Q8NHZ7 208 aaPredicted RBP5.26□□□□□ -1.57
VPS39-202ENST00000348544 RPEQ96AT9 228 aa5.26□□□□□ -1.57
VPS39-202ENST00000348544 ERG28Q9UKR5 140 aa5.26□□□□□ -1.57
VPS39-202ENST00000348544 BOD1L1Q8NFC6 3051 aa5.25□□□□□ -1.57
VPS39-202ENST00000348544 MYMXA0A1B0GTQ4 84 aa5.25□□□□□ -1.57
VPS39-202ENST00000348544 C17orf100A8MU93 164 aa5.25□□□□□ -1.57
VPS39-202ENST00000348544 F8W735 103 aaPredicted RBP5.25□□□□□ -1.57
VPS39-202ENST00000348544 IGLV1-47P01700 117 aa5.25□□□□□ -1.57
VPS39-202ENST00000348544 PLNP26678 52 aa5.25□□□□□ -1.57
VPS39-202ENST00000348544 SRSF2Q01130 221 aaKnown RBP5.25□□□□□ -1.57
VPS39-202ENST00000348544 LAGE3Q14657 143 aa5.25□□□□□ -1.57
VPS39-202ENST00000348544 C3orf36Q3SXR2 165 aa5.25□□□□□ -1.57
VPS39-202ENST00000348544 TDHQ8IZJ6 230 aa5.25□□□□□ -1.57
VPS39-202ENST00000348544 DLX4Q92988 240 aaPredicted RBP5.25□□□□□ -1.57
VPS39-202ENST00000348544 C11orf21Q9P2W6 132 aa5.25□□□□□ -1.57
VPS39-202ENST00000348544 SMAD5-AS1Q9Y6J3 95 aa5.25□□□□□ -1.57
VPS39-202ENST00000348544 PRSS29PA6NIE9 313 aa5.25□□□□□ -1.57
VPS39-202ENST00000348544 LINC01549A6NIU2 74 aa5.25□□□□□ -1.57
VPS39-202ENST00000348544 FAM27E3Q08E93 113 aa5.25□□□□□ -1.57
VPS39-202ENST00000348544 ERCC8Q13216 396 aa5.25□□□□□ -1.57
VPS39-202ENST00000348544 MYOZ3Q8TDC0 251 aa5.25□□□□□ -1.57
VPS39-202ENST00000348544 CFHR4Q92496 578 aa5.25□□□□□ -1.57
VPS39-202ENST00000348544 CCL17Q92583 94 aa5.25□□□□□ -1.57
VPS39-202ENST00000348544 SS18L2Q9UHA2 77 aa5.25□□□□□ -1.57
VPS39-202ENST00000348544 IGKV3D-20A0A0C4DH25 116 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms