RNA–Protein interactions for RNA: ENST00000343200.9

VCAN-203, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 9,455 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-203ENST00000343200 LINC01620Q4KN68 170 aa5.06□□□□□ -1.6
VCAN-203ENST00000343200 VN1R4Q7Z5H5 301 aa5.06□□□□□ -1.6
VCAN-203ENST00000343200 LINC00312Q9Y6C7 94 aa5.06□□□□□ -1.6
VCAN-203ENST00000343200 RPL36AP83881 106 aaKnown RBP5.06□□□□□ -1.6
VCAN-203ENST00000343200 ZNF329Q86UD4 541 aa5.06□□□□□ -1.6
VCAN-203ENST00000343200 RPL36ALQ969Q0 106 aaKnown RBP5.06□□□□□ -1.6
VCAN-203ENST00000343200 SCRT2Q9NQ03 307 aa5.06□□□□□ -1.6
VCAN-203ENST00000343200 IGKV2-40A0A087WW87 121 aaPredicted RBP5.06□□□□□ -1.6
VCAN-203ENST00000343200 A6NED7 52 aa5.06□□□□□ -1.6
VCAN-203ENST00000343200 J3QQQ9 107 aa5.06□□□□□ -1.6
VCAN-203ENST00000343200 IGKV2D-40P01614 121 aaPredicted RBP5.06□□□□□ -1.6
VCAN-203ENST00000343200 SLC25A47Q6Q0C1 308 aa5.06□□□□□ -1.6
VCAN-203ENST00000343200 C14orf178Q8N769 122 aaPredicted RBP5.06□□□□□ -1.6
VCAN-203ENST00000343200 Q8N8P6 123 aa5.06□□□□□ -1.6
VCAN-203ENST00000343200 RNF183Q96D59 192 aa5.06□□□□□ -1.6
VCAN-203ENST00000343200 PRR33A8MZF0 331 aa5.06□□□□□ -1.6
VCAN-203ENST00000343200 HRKO00198 91 aa5.06□□□□□ -1.6
VCAN-203ENST00000343200 IGKV1D-33P01593 117 aa5.06□□□□□ -1.6
VCAN-203ENST00000343200 IGKV1-33P01594 117 aa5.06□□□□□ -1.6
VCAN-203ENST00000343200 SH2D6Q7Z4S9 175 aa5.06□□□□□ -1.6
VCAN-203ENST00000343200 MAP1AP78559 2803 aaPredicted RBP5.06□□□□□ -1.6
VCAN-203ENST00000343200 PMS2P5A8MQ11 134 aa5.05□□□□□ -1.6
VCAN-203ENST00000343200 NDUFB1O75438 58 aa5.05□□□□□ -1.6
VCAN-203ENST00000343200 AGFG2O95081 481 aa5.05□□□□□ -1.6
VCAN-203ENST00000343200 YPEL2Q96QA6 119 aa5.05□□□□□ -1.6
VCAN-203ENST00000343200 IGHV3OR16-13A0A075B7E8 117 aa5.05□□□□□ -1.6
VCAN-203ENST00000343200 IGHV3-74A0A0B4J1X5 117 aa5.05□□□□□ -1.6
VCAN-203ENST00000343200 PDE6GP18545 87 aa5.05□□□□□ -1.6
VCAN-203ENST00000343200 PEBP1P30086 187 aaKnown RBP5.05□□□□□ -1.6
VCAN-203ENST00000343200 TMEM171Q8WVE6 324 aa5.05□□□□□ -1.6
VCAN-203ENST00000343200 LILRA1O75019 489 aa5.05□□□□□ -1.6
VCAN-203ENST00000343200 Q86TA4 180 aa5.05□□□□□ -1.6
VCAN-203ENST00000343200 ZIC4Q8N9L1 334 aa5.05□□□□□ -1.6
VCAN-203ENST00000343200 E9PQ18 207 aa5.05□□□□□ -1.6
VCAN-203ENST00000343200 H0YIZ8 118 aa5.05□□□□□ -1.6
VCAN-203ENST00000343200 RS1O15537 224 aa5.05□□□□□ -1.6
VCAN-203ENST00000343200 CELA2BP08218 269 aaPredicted RBP5.05□□□□□ -1.6
VCAN-203ENST00000343200 MST1P26927 711 aa5.05□□□□□ -1.6
VCAN-203ENST00000343200 FAM219BQ5XKK7 198 aa5.05□□□□□ -1.6
VCAN-203ENST00000343200 LIME1Q9H400 295 aa5.05□□□□□ -1.6
VCAN-203ENST00000343200 PLAC1Q9HBJ0 212 aa5.05□□□□□ -1.6
VCAN-203ENST00000343200 NDUFA12Q9UI09 145 aa5.05□□□□□ -1.6
VCAN-203ENST00000343200 WIPF2Q8TF74 440 aaPredicted RBP5.05□□□□□ -1.6
VCAN-203ENST00000343200 LINC00477Q96M19 166 aa5.05□□□□□ -1.6
VCAN-203ENST00000343200 TRBV7-1A0A0A6YYK4 115 aa5.05□□□□□ -1.6
VCAN-203ENST00000343200 IGLC1P0CG04 106 aa5.05□□□□□ -1.6
VCAN-203ENST00000343200 PF4P02776 101 aa5.04□□□□□ -1.6
VCAN-203ENST00000343200 LINC00271P0C7V0 271 aa5.04□□□□□ -1.6
VCAN-203ENST00000343200 CECR9P0C854 216 aa5.04□□□□□ -1.6
VCAN-203ENST00000343200 NTN5Q8WTR8 489 aaPredicted RBP5.04□□□□□ -1.6
VCAN-203ENST00000343200 CYTL1Q9NRR1 136 aa5.04□□□□□ -1.6
VCAN-203ENST00000343200 SAP30O75446 220 aa5.04□□□□□ -1.6
VCAN-203ENST00000343200 PRB1P04280 392 aa5.04□□□□□ -1.6
VCAN-203ENST00000343200 GATA2P23769 480 aaPredicted RBP5.04□□□□□ -1.6
VCAN-203ENST00000343200 UPK3BQ9BT76 320 aa5.04□□□□□ -1.6
VCAN-203ENST00000343200 ELANEP08246 267 aa5.04□□□□□ -1.6
VCAN-203ENST00000343200 ID3Q02535 119 aa5.04□□□□□ -1.6
VCAN-203ENST00000343200 SMKR1H3BMG3 65 aa5.04□□□□□ -1.6
VCAN-203ENST00000343200 UBE2AP49459 152 aa5.04□□□□□ -1.6
VCAN-203ENST00000343200 TRBV19A0A075B6N1 114 aa5.04□□□□□ -1.6
VCAN-203ENST00000343200 MRPS36P82909 103 aaKnown RBP5.04□□□□□ -1.6
VCAN-203ENST00000343200 CLEC19AQ6UXS0 136 aa5.04□□□□□ -1.6
VCAN-203ENST00000343200 ZNF826PQ6ZT77 177 aa5.04□□□□□ -1.6
VCAN-203ENST00000343200 IGKV1D-16P01601 117 aa5.04□□□□□ -1.6
VCAN-203ENST00000343200 NOVP48745 357 aa5.04□□□□□ -1.6
VCAN-203ENST00000343200 HIGD1BQ9P298 99 aa5.04□□□□□ -1.6
VCAN-203ENST00000343200 C12orf77C9JDV5 145 aa5.04□□□□□ -1.6
VCAN-203ENST00000343200 SUPT4H1P63272 117 aaKnown RBP5.04□□□□□ -1.6
VCAN-203ENST00000343200 CLUHP3Q96NS8 147 aa5.04□□□□□ -1.6
VCAN-203ENST00000343200 RCHY1Q96PM5 261 aa5.04□□□□□ -1.6
VCAN-203ENST00000343200 ZNF492Q9P255 531 aa5.04□□□□□ -1.6
VCAN-203ENST00000343200 CFC1BP0CG36 223 aa5.04□□□□□ -1.6
VCAN-203ENST00000343200 CFC1P0CG37 223 aa5.04□□□□□ -1.6
VCAN-203ENST00000343200 CCL3P10147 92 aa5.04□□□□□ -1.6
VCAN-203ENST00000343200 ITLN1Q8WWA0 313 aa5.03□□□□□ -1.6
VCAN-203ENST00000343200 IGKV3D-7A0A0C4DH55 119 aa5.03□□□□□ -1.6
VCAN-203ENST00000343200 BUB3O43684 328 aa5.03□□□□□ -1.6
VCAN-203ENST00000343200 IGHV3-23P01764 117 aa5.03□□□□□ -1.6
VCAN-203ENST00000343200 PMAIP1Q13794 54 aa5.03□□□□□ -1.6
VCAN-203ENST00000343200 TMEM52Q8NDY8 209 aa5.03□□□□□ -1.6
VCAN-203ENST00000343200 LOC101059948A0A1B0GTJ6 334 aa5.03□□□□□ -1.6
VCAN-203ENST00000343200 LGALS9O00182 355 aa5.03□□□□□ -1.6
VCAN-203ENST00000343200 ZNF876PQ49A33 203 aa5.03□□□□□ -1.6
VCAN-203ENST00000343200 IGHV3-73A0A0B4J1V6 119 aa5.03□□□□□ -1.6
VCAN-203ENST00000343200 IGHV3-35A0A0C4DH35 117 aa5.03□□□□□ -1.6
VCAN-203ENST00000343200 H0YGX0 51 aa5.03□□□□□ -1.6
VCAN-203ENST00000343200 H3BT86 120 aa5.03□□□□□ -1.6
VCAN-203ENST00000343200 WISP3O95389 354 aaPredicted RBP5.03□□□□□ -1.6
VCAN-203ENST00000343200 PFN1P07737 140 aaKnown RBP5.03□□□□□ -1.6
VCAN-203ENST00000343200 C15orf32Q32M92 178 aa5.03□□□□□ -1.6
VCAN-203ENST00000343200 PRR30Q53SZ7 412 aaPredicted RBP5.03□□□□□ -1.6
VCAN-203ENST00000343200 TMEM14EPQ6UXP3 125 aa5.03□□□□□ -1.6
VCAN-203ENST00000343200 IMUPQ9GZP8 106 aa5.03□□□□□ -1.6
VCAN-203ENST00000343200 CHCHD2Q9Y6H1 151 aaPredicted RBP5.03□□□□□ -1.6
VCAN-203ENST00000343200 H0YJW9 148 aa5.03□□□□□ -1.6
VCAN-203ENST00000343200 LAIR2Q6ISS4 152 aa5.03□□□□□ -1.6
VCAN-203ENST00000343200 MCRIP2Q9BUT9 160 aaKnown RBP5.03□□□□□ -1.6
VCAN-203ENST00000343200 JMJD7-PLA2G4BH0Y9G9 81 aa5.03□□□□□ -1.6
VCAN-203ENST00000343200 SPSB3Q6PJ21 355 aa5.03□□□□□ -1.6
VCAN-203ENST00000343200 SMRP1Q8NCR6 262 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 111.1 ms