RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 C7orf71A4D174 169 aa12.4□□□□□ -0.42
HDDC3-201ENST00000330334 H3BNG1 76 aa12.4□□□□□ -0.42
HDDC3-201ENST00000330334 NUDT3O95989 172 aa12.4□□□□□ -0.42
HDDC3-201ENST00000330334 CRISP2P16562 243 aa12.4□□□□□ -0.42
HDDC3-201ENST00000330334 DEFA1P59665 94 aa12.4□□□□□ -0.42
HDDC3-201ENST00000330334 DEFA3P59666 94 aa12.4□□□□□ -0.42
HDDC3-201ENST00000330334 CLINT1Q14677 625 aa12.4□□□□□ -0.42
HDDC3-201ENST00000330334 C1orf134Q5TEV5 83 aa12.4□□□□□ -0.42
HDDC3-201ENST00000330334 MIR17HGQ75NE6 70 aa12.4□□□□□ -0.42
HDDC3-201ENST00000330334 EXOC3-AS1Q8N2X6 119 aa12.4□□□□□ -0.42
HDDC3-201ENST00000330334 ZNRF2Q8NHG8 242 aa12.4□□□□□ -0.42
HDDC3-201ENST00000330334 BLNKQ8WV28 456 aa12.4□□□□□ -0.42
HDDC3-201ENST00000330334 RNF141Q8WVD5 230 aa12.4□□□□□ -0.42
HDDC3-201ENST00000330334 OR51M1Q9H341 326 aa12.4□□□□□ -0.42
HDDC3-201ENST00000330334 NACAE9PAV3 2078 aa12.4□□□□□ -0.42
HDDC3-201ENST00000330334 C17orf112F2Z3M2 114 aa12.39□□□□□ -0.43
HDDC3-201ENST00000330334 J3KRW8 73 aa12.39□□□□□ -0.43
HDDC3-201ENST00000330334 PET100P0DJ07 73 aa12.39□□□□□ -0.43
HDDC3-201ENST00000330334 M6PRP20645 277 aa12.39□□□□□ -0.43
HDDC3-201ENST00000330334 ERCC8Q13216 396 aa12.39□□□□□ -0.43
HDDC3-201ENST00000330334 ANXA2RQ3ZCQ2 193 aa12.39□□□□□ -0.43
HDDC3-201ENST00000330334 ZNF680Q8NEM1 530 aa12.39□□□□□ -0.43
HDDC3-201ENST00000330334 C18orf15Q96N68 181 aa12.39□□□□□ -0.43
HDDC3-201ENST00000330334 DNAH11Q96DT5 4516 aa12.38□□□□□ -0.43
HDDC3-201ENST00000330334 TRBV7-9A0A0J9YWB2 115 aa12.38□□□□□ -0.43
HDDC3-201ENST00000330334 ICAM4Q14773 271 aa12.38□□□□□ -0.43
HDDC3-201ENST00000330334 LYPD1Q8N2G4 141 aa12.38□□□□□ -0.43
HDDC3-201ENST00000330334 RXFP4Q8TDU9 374 aa12.38□□□□□ -0.43
HDDC3-201ENST00000330334 FXYD5Q96DB9 178 aa12.38□□□□□ -0.43
HDDC3-201ENST00000330334 ATP5SQ99766 215 aa12.38□□□□□ -0.43
HDDC3-201ENST00000330334 PAXXQ9BUH6 204 aa12.38□□□□□ -0.43
HDDC3-201ENST00000330334 FUT9Q9Y231 359 aa12.38□□□□□ -0.43
HDDC3-201ENST00000330334 GAGE12BA1L429 117 aa12.37□□□□□ -0.43
HDDC3-201ENST00000330334 GAGE7O76087 117 aa12.37□□□□□ -0.43
HDDC3-201ENST00000330334 MPC2O95563 127 aa12.37□□□□□ -0.43
HDDC3-201ENST00000330334 GAGE12FP0CL80 117 aa12.37□□□□□ -0.43
HDDC3-201ENST00000330334 GAGE12GP0CL81 117 aa12.37□□□□□ -0.43
HDDC3-201ENST00000330334 GAGE12IP0CL82 117 aa12.37□□□□□ -0.43
HDDC3-201ENST00000330334 OR5I1Q13606 314 aa12.37□□□□□ -0.43
HDDC3-201ENST00000330334 TMEM78Q5T7P6 136 aa12.37□□□□□ -0.43
HDDC3-201ENST00000330334 C11orf72Q8NBR9 251 aa12.37□□□□□ -0.43
HDDC3-201ENST00000330334 GNPNAT1Q96EK6 184 aaPredicted RBP12.37□□□□□ -0.43
HDDC3-201ENST00000330334 LINC00588Q9Y4M8 146 aa12.37□□□□□ -0.43
HDDC3-201ENST00000330334 DYNC1H1Q14204 4646 aaKnown RBP12.36□□□□□ -0.43
HDDC3-201ENST00000330334 TRAV26-1A0A087WT03 109 aa12.36□□□□□ -0.43
HDDC3-201ENST00000330334 NBDYA0A0U1RRE5 68 aa12.36□□□□□ -0.43
HDDC3-201ENST00000330334 SSNA1O43805 119 aa12.36□□□□□ -0.43
HDDC3-201ENST00000330334 GPX1P07203 203 aa12.36□□□□□ -0.43
HDDC3-201ENST00000330334 RNASE4P34096 147 aaKnown RBP12.36□□□□□ -0.43
HDDC3-201ENST00000330334 CD300CQ08708 224 aa12.36□□□□□ -0.43
HDDC3-201ENST00000330334 EIF4E3Q8N5X7 224 aaKnown RBP12.36□□□□□ -0.43
HDDC3-201ENST00000330334 ZFAND2AQ8N6M9 145 aa12.36□□□□□ -0.43
HDDC3-201ENST00000330334 ZNF492Q9P255 531 aa12.36□□□□□ -0.43
HDDC3-201ENST00000330334 HSPB11Q9Y547 144 aa12.36□□□□□ -0.43
HDDC3-201ENST00000330334 MED14OSP0DP75 135 aa12.35□□□□□ -0.43
HDDC3-201ENST00000330334 HOXA5P20719 270 aa12.35□□□□□ -0.43
HDDC3-201ENST00000330334 BTN1A1Q13410 526 aa12.35□□□□□ -0.43
HDDC3-201ENST00000330334 FAM122CQ6P4D5 195 aa12.35□□□□□ -0.43
HDDC3-201ENST00000330334 VGLL1Q99990 258 aa12.35□□□□□ -0.43
HDDC3-201ENST00000330334 GSN-AS1Q9NRJ2 163 aa12.35□□□□□ -0.43
HDDC3-201ENST00000330334 IGKV2-40A0A087WW87 121 aaPredicted RBP12.34□□□□□ -0.43
HDDC3-201ENST00000330334 RBAKDNA6NC62 111 aa12.34□□□□□ -0.43
HDDC3-201ENST00000330334 IFNA5P01569 189 aa12.34□□□□□ -0.43
HDDC3-201ENST00000330334 IGKV2D-40P01614 121 aaPredicted RBP12.34□□□□□ -0.43
HDDC3-201ENST00000330334 OR10J4P0C629 311 aa12.34□□□□□ -0.43
HDDC3-201ENST00000330334 RPL12P30050 165 aaKnown RBP12.34□□□□□ -0.43
HDDC3-201ENST00000330334 ZNF138P52744 262 aa12.34□□□□□ -0.43
HDDC3-201ENST00000330334 IBA57Q5T440 356 aaKnown RBP12.34□□□□□ -0.43
HDDC3-201ENST00000330334 Q6ZTI0 123 aa12.34□□□□□ -0.43
HDDC3-201ENST00000330334 SSX7Q7RTT5 188 aa12.34□□□□□ -0.43
HDDC3-201ENST00000330334 SCGB1C1Q8TD33 95 aa12.34□□□□□ -0.43
HDDC3-201ENST00000330334 CSN1S1P47710 185 aa12.33□□□□□ -0.44
HDDC3-201ENST00000330334 TCL1AP56279 114 aa12.33□□□□□ -0.44
HDDC3-201ENST00000330334 PHYHIPLQ96FC7 376 aa12.33□□□□□ -0.44
HDDC3-201ENST00000330334 BATF3Q9NR55 127 aa12.33□□□□□ -0.44
HDDC3-201ENST00000330334 OR7C2O60412 319 aa12.32□□□□□ -0.44
HDDC3-201ENST00000330334 SPINK4O60575 86 aa12.32□□□□□ -0.44
HDDC3-201ENST00000330334 TAS2R45P59539 299 aa12.32□□□□□ -0.44
HDDC3-201ENST00000330334 RANP62826 216 aaKnown RBP12.32□□□□□ -0.44
HDDC3-201ENST00000330334 FFAR4Q5NUL3 377 aa12.32□□□□□ -0.44
HDDC3-201ENST00000330334 UPK3BQ9BT76 320 aa12.32□□□□□ -0.44
HDDC3-201ENST00000330334 TMPRSS5Q9H3S3 457 aa12.32□□□□□ -0.44
HDDC3-201ENST00000330334 Q9H8V8 135 aa12.32□□□□□ -0.44
HDDC3-201ENST00000330334 LENEPQ9Y5L5 61 aa12.32□□□□□ -0.44
HDDC3-201ENST00000330334 TRGV2A0A075B6R0 118 aa12.31□□□□□ -0.44
HDDC3-201ENST00000330334 IGHV1OR15-1A0A075B7D0 117 aa12.31□□□□□ -0.44
HDDC3-201ENST00000330334 A0A0J9YY99 117 aa12.31□□□□□ -0.44
HDDC3-201ENST00000330334 RGS13O14921 159 aa12.31□□□□□ -0.44
HDDC3-201ENST00000330334 KHDC3LQ587J8 217 aa12.31□□□□□ -0.44
HDDC3-201ENST00000330334 C6orf223Q8N319 242 aa12.31□□□□□ -0.44
HDDC3-201ENST00000330334 Q9H3A6 140 aa12.31□□□□□ -0.44
HDDC3-201ENST00000330334 MBD2Q9UBB5 411 aa12.31□□□□□ -0.44
HDDC3-201ENST00000330334 UBE2L3P68036 154 aaKnown RBP12.3□□□□□ -0.44
HDDC3-201ENST00000330334 ZNF266Q14584 549 aa12.3□□□□□ -0.44
HDDC3-201ENST00000330334 PRR9Q5T870 116 aa12.3□□□□□ -0.44
HDDC3-201ENST00000330334 ARL6IP6Q8N6S5 226 aa12.3□□□□□ -0.44
HDDC3-201ENST00000330334 TMED6Q8WW62 240 aa12.3□□□□□ -0.44
HDDC3-201ENST00000330334 KLF12Q9Y4X4 402 aa12.3□□□□□ -0.44
HDDC3-201ENST00000330334 TRGV1A0A0A0MS02 117 aa12.29□□□□□ -0.44
HDDC3-201ENST00000330334 BTF3P20290 206 aaKnown RBP12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms