RNA–Protein interactions for RNA: ENST00000637494.1

CLN6-221, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5 BASIC

Gene CLN6, Length 765 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-221ENST00000637494 ZNF253O75346 499 aa13.45□□□□□ -0.26
CLN6-221ENST00000637494 PRB4P10163 310 aaPredicted RBP13.45□□□□□ -0.26
CLN6-221ENST00000637494 DEFA1P59665 94 aa13.45□□□□□ -0.26
CLN6-221ENST00000637494 DEFA3P59666 94 aa13.45□□□□□ -0.26
CLN6-221ENST00000637494 TMEM88Q6PEY1 159 aa13.45□□□□□ -0.26
CLN6-221ENST00000637494 ZNF493Q6ZR52 646 aa13.45□□□□□ -0.26
CLN6-221ENST00000637494 CCDC28AQ8IWP9 274 aa13.45□□□□□ -0.26
CLN6-221ENST00000637494 C15orf53Q8NAA6 179 aa13.45□□□□□ -0.26
CLN6-221ENST00000637494 SAT2Q96F10 170 aaPredicted RBP13.45□□□□□ -0.26
CLN6-221ENST00000637494 KCNIP2Q9NS61 270 aa13.45□□□□□ -0.26
CLN6-221ENST00000637494 A6NHS1 94 aa13.44□□□□□ -0.26
CLN6-221ENST00000637494 SIX6O95475 246 aa13.44□□□□□ -0.26
CLN6-221ENST00000637494 PRM2P04554 102 aa13.44□□□□□ -0.26
CLN6-221ENST00000637494 LEPP41159 167 aa13.44□□□□□ -0.26
CLN6-221ENST00000637494 LRRC37A5PQ49AS3 106 aa13.44□□□□□ -0.26
CLN6-221ENST00000637494 LINC00336Q6ZUF6 198 aa13.44□□□□□ -0.26
CLN6-221ENST00000637494 NPCDR1Q9BY65 106 aa13.44□□□□□ -0.26
CLN6-221ENST00000637494 TIMM9Q9Y5J7 89 aa13.44□□□□□ -0.26
CLN6-221ENST00000637494 TIMM8BQ9Y5J9 83 aaPredicted RBP13.44□□□□□ -0.26
CLN6-221ENST00000637494 ATP5G1P05496 136 aa13.43□□□□□ -0.26
CLN6-221ENST00000637494 AZU1P20160 251 aa13.43□□□□□ -0.26
CLN6-221ENST00000637494 ATP5G3P48201 142 aa13.43□□□□□ -0.26
CLN6-221ENST00000637494 NHLH2Q02577 135 aa13.43□□□□□ -0.26
CLN6-221ENST00000637494 RNF212Q495C1 297 aa13.43□□□□□ -0.26
CLN6-221ENST00000637494 OR5C1Q8NGR4 320 aa13.43□□□□□ -0.26
CLN6-221ENST00000637494 ZNF586Q9NXT0 402 aa13.43□□□□□ -0.26
CLN6-221ENST00000637494 TMEM14CQ9P0S9 112 aa13.43□□□□□ -0.26
CLN6-221ENST00000637494 PRELID1Q9Y255 219 aa13.43□□□□□ -0.26
CLN6-221ENST00000637494 PRAC2D3DTV9 90 aa13.42□□□□□ -0.26
CLN6-221ENST00000637494 HIST1H1EP10412 219 aaKnown RBP13.42□□□□□ -0.26
CLN6-221ENST00000637494 PDE6HQ13956 83 aa13.42□□□□□ -0.26
CLN6-221ENST00000637494 TMEM263Q8WUH6 116 aaKnown RBP13.42□□□□□ -0.26
CLN6-221ENST00000637494 MRPL53Q96EL3 112 aaKnown RBP13.42□□□□□ -0.26
CLN6-221ENST00000637494 ODF3Q96PU9 254 aa13.42□□□□□ -0.26
CLN6-221ENST00000637494 AAMDCQ9H7C9 122 aa13.42□□□□□ -0.26
CLN6-221ENST00000637494 TRBV19A0A075B6N1 114 aa13.41□□□□□ -0.26
CLN6-221ENST00000637494 CBY3A6NI87 242 aa13.41□□□□□ -0.26
CLN6-221ENST00000637494 C17orf112F2Z3M2 114 aa13.41□□□□□ -0.26
CLN6-221ENST00000637494 F5H768 121 aa13.41□□□□□ -0.26
CLN6-221ENST00000637494 SSNA1O43805 119 aa13.41□□□□□ -0.26
CLN6-221ENST00000637494 PET100P0DJ07 73 aa13.41□□□□□ -0.26
CLN6-221ENST00000637494 THAP6Q8TBB0 222 aa13.41□□□□□ -0.26
CLN6-221ENST00000637494 ATG101Q9BSB4 218 aa13.41□□□□□ -0.26
CLN6-221ENST00000637494 KMT2AQ03164 3969 aa13.4□□□□□ -0.26
CLN6-221ENST00000637494 NPIPB6E9PJ23 425 aa13.4□□□□□ -0.26
CLN6-221ENST00000637494 J3KRW8 73 aa13.4□□□□□ -0.26
CLN6-221ENST00000637494 M0R2N4 97 aa13.4□□□□□ -0.26
CLN6-221ENST00000637494 CLINT1Q14677 625 aa13.4□□□□□ -0.26
CLN6-221ENST00000637494 GFI1BQ5VTD9 330 aa13.4□□□□□ -0.26
CLN6-221ENST00000637494 BLNKQ8WV28 456 aa13.4□□□□□ -0.26
CLN6-221ENST00000637494 PARD6GQ9BYG4 376 aaPredicted RBP13.4□□□□□ -0.26
CLN6-221ENST00000637494 OR5AC2Q9NZP5 309 aa13.4□□□□□ -0.26
CLN6-221ENST00000637494 PLAC8L1A1L4L8 177 aa13.39□□□□□ -0.27
CLN6-221ENST00000637494 SNURFLB1AK76 121 aa13.39□□□□□ -0.27
CLN6-221ENST00000637494 IFITM3Q01628 133 aa13.39□□□□□ -0.27
CLN6-221ENST00000637494 FCN2Q15485 313 aa13.39□□□□□ -0.27
CLN6-221ENST00000637494 LGALS9BQ3B8N2 356 aa13.39□□□□□ -0.27
CLN6-221ENST00000637494 MARVELD1Q9BSK0 173 aa13.39□□□□□ -0.27
CLN6-221ENST00000637494 NOP10Q9NPE3 64 aaKnown RBP13.39□□□□□ -0.27
CLN6-221ENST00000637494 CT45A10P0DMU9 189 aa13.38□□□□□ -0.27
CLN6-221ENST00000637494 PYYP10082 97 aa13.38□□□□□ -0.27
CLN6-221ENST00000637494 FAM3BP58499 235 aaPredicted RBP13.38□□□□□ -0.27
CLN6-221ENST00000637494 RNASE8Q8TDE3 154 aaKnown RBP13.38□□□□□ -0.27
CLN6-221ENST00000637494 PPP1R1CQ8WVI7 109 aa13.38□□□□□ -0.27
CLN6-221ENST00000637494 MRPL32Q9BYC8 188 aaKnown RBP13.38□□□□□ -0.27
CLN6-221ENST00000637494 IGLV2-18A0A075B6J9 118 aa13.37□□□□□ -0.27
CLN6-221ENST00000637494 TRAV12-3A0A0B4J271 114 aa13.37□□□□□ -0.27
CLN6-221ENST00000637494 SLC25A5P05141 298 aaKnown RBP13.37□□□□□ -0.27
CLN6-221ENST00000637494 KIR3DS1Q14943 382 aa13.37□□□□□ -0.27
CLN6-221ENST00000637494 GCSAMLQ5JQS6 135 aa13.37□□□□□ -0.27
CLN6-221ENST00000637494 SOHLH1Q5JUK2 328 aa13.37□□□□□ -0.27
CLN6-221ENST00000637494 LINC00477Q96M19 166 aa13.37□□□□□ -0.27
CLN6-221ENST00000637494 PYGO2Q9BRQ0 406 aa13.37□□□□□ -0.27
CLN6-221ENST00000637494 WDR61Q9GZS3 305 aaKnown RBP13.37□□□□□ -0.27
CLN6-221ENST00000637494 M0R3E3 92 aa13.36□□□□□ -0.27
CLN6-221ENST00000637494 NUDT3O95989 172 aa13.36□□□□□ -0.27
CLN6-221ENST00000637494 ATP5SQ99766 215 aa13.36□□□□□ -0.27
CLN6-221ENST00000637494 SLC25A2Q9BXI2 301 aa13.36□□□□□ -0.27
CLN6-221ENST00000637494 OR51M1Q9H341 326 aa13.36□□□□□ -0.27
CLN6-221ENST00000637494 H0YIZ8 118 aa13.35□□□□□ -0.27
CLN6-221ENST00000637494 NDUFB4O95168 129 aa13.35□□□□□ -0.27
CLN6-221ENST00000637494 IFNA5P01569 189 aa13.35□□□□□ -0.27
CLN6-221ENST00000637494 NBEAP1P0C6P0 100 aa13.35□□□□□ -0.27
CLN6-221ENST00000637494 H2BFSP57053 126 aa13.35□□□□□ -0.27
CLN6-221ENST00000637494 TMEM78Q5T7P6 136 aa13.35□□□□□ -0.27
CLN6-221ENST00000637494 MIR17HGQ75NE6 70 aa13.35□□□□□ -0.27
CLN6-221ENST00000637494 SCGB1C1Q8TD33 95 aa13.35□□□□□ -0.27
CLN6-221ENST00000637494 PAXXQ9BUH6 204 aa13.35□□□□□ -0.27
CLN6-221ENST00000637494 BATF3Q9NR55 127 aa13.35□□□□□ -0.27
CLN6-221ENST00000637494 C7orf71A4D174 169 aa13.34□□□□□ -0.27
CLN6-221ENST00000637494 MPC2O95563 127 aa13.34□□□□□ -0.27
CLN6-221ENST00000637494 ERCC8Q13216 396 aa13.34□□□□□ -0.27
CLN6-221ENST00000637494 ICAM4Q14773 271 aa13.34□□□□□ -0.27
CLN6-221ENST00000637494 EXOC3-AS1Q8N2X6 119 aa13.34□□□□□ -0.27
CLN6-221ENST00000637494 FUT9Q9Y231 359 aa13.34□□□□□ -0.27
CLN6-221ENST00000637494 HSPB11Q9Y547 144 aa13.34□□□□□ -0.27
CLN6-221ENST00000637494 VPS13DQ5THJ4 4388 aa13.33□□□□□ -0.28
CLN6-221ENST00000637494 PRSS29PA6NIE9 313 aa13.33□□□□□ -0.28
CLN6-221ENST00000637494 OR7C2O60412 319 aa13.33□□□□□ -0.28
CLN6-221ENST00000637494 GPX1P07203 203 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms