RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 MRAPQ8TCY5 172 aa8.15□□□□□ -1.11
VPS39-214ENST00000614932 RITA1Q96K30 269 aa8.15□□□□□ -1.11
VPS39-214ENST00000614932 PRADC1Q9BSG0 188 aa8.15□□□□□ -1.11
VPS39-214ENST00000614932 ZNF318Q5VUA4 2279 aa8.14□□□□□ -1.11
VPS39-214ENST00000614932 TMSB15BA0A087X1C1 80 aa8.14□□□□□ -1.11
VPS39-214ENST00000614932 PEX7O00628 323 aa8.14□□□□□ -1.11
VPS39-214ENST00000614932 WNT9BO14905 357 aa8.14□□□□□ -1.11
VPS39-214ENST00000614932 HBDP02042 147 aa8.14□□□□□ -1.11
VPS39-214ENST00000614932 FCER1GP30273 86 aa8.14□□□□□ -1.11
VPS39-214ENST00000614932 EMP1P54849 157 aa8.14□□□□□ -1.11
VPS39-214ENST00000614932 LYRM7Q5U5X0 104 aa8.14□□□□□ -1.11
VPS39-214ENST00000614932 OR13A1Q8NGR1 328 aa8.14□□□□□ -1.11
VPS39-214ENST00000614932 NABP2Q9BQ15 211 aa8.14□□□□□ -1.11
VPS39-214ENST00000614932 PRSS22Q9GZN4 317 aa8.14□□□□□ -1.11
VPS39-214ENST00000614932 HHLA3Q9XRX5 114 aa8.14□□□□□ -1.11
VPS39-214ENST00000614932 BSNQ9UPA5 3926 aa8.14□□□□□ -1.11
VPS39-214ENST00000614932 INTS1Q8N201 2190 aaKnown RBP8.14□□□□□ -1.11
VPS39-214ENST00000614932 K7EM74 188 aa8.14□□□□□ -1.11
VPS39-214ENST00000614932 LOC107984156A0A0G2JMH3 177 aa8.13□□□□□ -1.11
VPS39-214ENST00000614932 P01737 135 aa8.13□□□□□ -1.11
VPS39-214ENST00000614932 HES1Q14469 280 aa8.13□□□□□ -1.11
VPS39-214ENST00000614932 ARL17AQ8IVW1 177 aa8.13□□□□□ -1.11
VPS39-214ENST00000614932 C17orf98A8MV24 154 aa8.13□□□□□ -1.11
VPS39-214ENST00000614932 DUSP14O95147 198 aaKnown RBP8.13□□□□□ -1.11
VPS39-214ENST00000614932 UCNP55089 124 aa8.13□□□□□ -1.11
VPS39-214ENST00000614932 CHCHD5Q9BSY4 110 aa8.13□□□□□ -1.11
VPS39-214ENST00000614932 PROCRQ9UNN8 238 aa8.13□□□□□ -1.11
VPS39-214ENST00000614932 AGRNO00468 2067 aa8.13□□□□□ -1.11
VPS39-214ENST00000614932 ROS1P08922 2347 aa8.13□□□□□ -1.11
VPS39-214ENST00000614932 SS18L1O75177 396 aaPredicted RBP8.12□□□□□ -1.11
VPS39-214ENST00000614932 NDUFA7O95182 113 aa8.12□□□□□ -1.11
VPS39-214ENST00000614932 SCGB1C2P0DMR2 95 aa8.12□□□□□ -1.11
VPS39-214ENST00000614932 BAALCQ8WXS3 180 aa8.12□□□□□ -1.11
VPS39-214ENST00000614932 ZMAT4Q9H898 229 aa8.12□□□□□ -1.11
VPS39-214ENST00000614932 ANKRD11Q6UB99 2663 aaPredicted RBP8.12□□□□□ -1.11
VPS39-214ENST00000614932 TRBV7-3A0A075B6L6 115 aa8.12□□□□□ -1.11
VPS39-214ENST00000614932 H3BVH4 76 aa8.12□□□□□ -1.11
VPS39-214ENST00000614932 TM4SF5O14894 197 aa8.12□□□□□ -1.11
VPS39-214ENST00000614932 RPS28P62857 69 aaKnown RBP8.12□□□□□ -1.11
VPS39-214ENST00000614932 ZFP2Q6ZN57 461 aa8.12□□□□□ -1.11
VPS39-214ENST00000614932 WDR31Q8NA23 367 aa8.12□□□□□ -1.11
VPS39-214ENST00000614932 C15orf53Q8NAA6 179 aa8.12□□□□□ -1.11
VPS39-214ENST00000614932 KIR2DL5BQ8NHK3 375 aa8.12□□□□□ -1.11
VPS39-214ENST00000614932 KALRNO60229 2985 aa8.12□□□□□ -1.11
VPS39-214ENST00000614932 ACACAQ13085 2346 aa8.12□□□□□ -1.11
VPS39-214ENST00000614932 CEP295Q9C0D2 2601 aa8.12□□□□□ -1.11
VPS39-214ENST00000614932 MYMXA0A1B0GTQ4 84 aa8.11□□□□□ -1.11
VPS39-214ENST00000614932 WI2-2373I1.2A0A1W2PRP0 233 aa8.11□□□□□ -1.11
VPS39-214ENST00000614932 OR2H2O95918 312 aa8.11□□□□□ -1.11
VPS39-214ENST00000614932 C8orf88P0DMB2 117 aa8.11□□□□□ -1.11
VPS39-214ENST00000614932 BRWD1-AS2P59051 145 aa8.11□□□□□ -1.11
VPS39-214ENST00000614932 EDA2RQ9HAV5 297 aa8.11□□□□□ -1.11
VPS39-214ENST00000614932 RAXQ9Y2V3 346 aa8.11□□□□□ -1.11
VPS39-214ENST00000614932 APC2O95996 2303 aa8.11□□□□□ -1.11
VPS39-214ENST00000614932 PCNX1Q96RV3 2341 aa8.11□□□□□ -1.11
VPS39-214ENST00000614932 LOC389332A0A1B0GUA5 103 aa8.11□□□□□ -1.11
VPS39-214ENST00000614932 SRRM4A7MD48 611 aaKnown RBP8.11□□□□□ -1.11
VPS39-214ENST00000614932 GFRA3O60609 400 aa8.11□□□□□ -1.11
VPS39-214ENST00000614932 ORM2P19652 201 aa8.11□□□□□ -1.11
VPS39-214ENST00000614932 UBE2D3P61077 147 aa8.11□□□□□ -1.11
VPS39-214ENST00000614932 UBE2D2P62837 147 aa8.11□□□□□ -1.11
VPS39-214ENST00000614932 UBE2L3P68036 154 aaKnown RBP8.11□□□□□ -1.11
VPS39-214ENST00000614932 LINC00596Q86U02 117 aa8.11□□□□□ -1.11
VPS39-214ENST00000614932 ZNF329Q86UD4 541 aa8.11□□□□□ -1.11
VPS39-214ENST00000614932 GTSCR1Q86UQ5 136 aa8.11□□□□□ -1.11
VPS39-214ENST00000614932 KLF14Q8TD94 323 aaPredicted RBP8.11□□□□□ -1.11
VPS39-214ENST00000614932 TRAV8-1A0A0A6YYK1 113 aa8.11□□□□□ -1.11
VPS39-214ENST00000614932 TRAV17A0A0B4J275 112 aa8.11□□□□□ -1.11
VPS39-214ENST00000614932 IGKCP01834 107 aa8.11□□□□□ -1.11
VPS39-214ENST00000614932 IGLC6P0CF74 106 aa8.11□□□□□ -1.11
VPS39-214ENST00000614932 HERVK_113P63121 156 aa8.11□□□□□ -1.11
VPS39-214ENST00000614932 TCF15Q12870 199 aa8.11□□□□□ -1.11
VPS39-214ENST00000614932 C9orf153Q5TBE3 101 aa8.11□□□□□ -1.11
VPS39-214ENST00000614932 LINC00322Q6ZN03 302 aaPredicted RBP8.11□□□□□ -1.11
VPS39-214ENST00000614932 SLC25A2Q9BXI2 301 aa8.11□□□□□ -1.11
VPS39-214ENST00000614932 ZNF492Q9P255 531 aa8.11□□□□□ -1.11
VPS39-214ENST00000614932 EPDR1Q9UM22 224 aa8.11□□□□□ -1.11
VPS39-214ENST00000614932 PTPRBP23467 1997 aa8.11□□□□□ -1.11
VPS39-214ENST00000614932 C19orf71A6NCJ1 209 aa8.1□□□□□ -1.11
VPS39-214ENST00000614932 OOSP1A8MZH6 123 aa8.1□□□□□ -1.11
VPS39-214ENST00000614932 FXYD7P58549 80 aa8.1□□□□□ -1.11
VPS39-214ENST00000614932 EIF4EBP1Q13541 118 aaPredicted RBP8.1□□□□□ -1.11
VPS39-214ENST00000614932 Q6ZT83 130 aa8.1□□□□□ -1.11
VPS39-214ENST00000614932 ODF3Q96PU9 254 aa8.1□□□□□ -1.11
VPS39-214ENST00000614932 RTL8AQ9BWD3 113 aa8.1□□□□□ -1.11
VPS39-214ENST00000614932 LINC01549A6NIU2 74 aa8.1□□□□□ -1.11
VPS39-214ENST00000614932 LINC01619G3V211 115 aa8.1□□□□□ -1.11
VPS39-214ENST00000614932 TIMM8AO60220 97 aaPredicted RBP8.1□□□□□ -1.11
VPS39-214ENST00000614932 IGHV3-13P01766 116 aa8.1□□□□□ -1.11
VPS39-214ENST00000614932 MAPKAPK5-AS1Q8N8E1 139 aa8.1□□□□□ -1.11
VPS39-214ENST00000614932 SPANXCQ9NY87 97 aa8.1□□□□□ -1.11
VPS39-214ENST00000614932 METRNQ9UJH8 293 aa8.1□□□□□ -1.11
VPS39-214ENST00000614932 J3QT63 122 aa8.09□□□□□ -1.11
VPS39-214ENST00000614932 PSPNO60542 156 aa8.09□□□□□ -1.11
VPS39-214ENST00000614932 TNFRSF6BO95407 300 aa8.09□□□□□ -1.11
VPS39-214ENST00000614932 CECR9P0C854 216 aa8.09□□□□□ -1.11
VPS39-214ENST00000614932 ZC2HC1BQ5TFG8 222 aa8.09□□□□□ -1.11
VPS39-214ENST00000614932 TMEM219Q86XT9 240 aa8.09□□□□□ -1.11
VPS39-214ENST00000614932 C10orf126Q8N4M7 172 aa8.09□□□□□ -1.11
VPS39-214ENST00000614932 GATD1Q8NB37 220 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms