RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 DEFB131BA0A096LNP1 70 aa17.1■□□□□ 0.33
SHMT1-206ENST00000579558 TEX48A0A1B0GUV7 120 aa17.1■□□□□ 0.33
SHMT1-206ENST00000579558 PRAC2D3DTV9 90 aa17.1■□□□□ 0.33
SHMT1-206ENST00000579558 C17orf112F2Z3M2 114 aa17.1■□□□□ 0.33
SHMT1-206ENST00000579558 ZNF253O75346 499 aa17.1■□□□□ 0.33
SHMT1-206ENST00000579558 FAM222AQ5U5X8 452 aa17.1■□□□□ 0.33
SHMT1-206ENST00000579558 LGALS9CQ6DKI2 356 aa17.1■□□□□ 0.33
SHMT1-206ENST00000579558 SMIM3Q9BZL3 60 aa17.1■□□□□ 0.33
SHMT1-206ENST00000579558 DKK2Q9UBU2 259 aa17.1■□□□□ 0.33
SHMT1-206ENST00000579558 TRBV19A0A075B6N1 114 aa17.09■□□□□ 0.33
SHMT1-206ENST00000579558 PYYP10082 97 aa17.09■□□□□ 0.33
SHMT1-206ENST00000579558 HIST1H1EP10412 219 aaKnown RBP17.09■□□□□ 0.33
SHMT1-206ENST00000579558 YTHDF2Q9Y5A9 579 aaKnown RBP17.09■□□□□ 0.33
SHMT1-206ENST00000579558 ZNF705GA8MUZ8 300 aaPredicted RBP17.08■□□□□ 0.32
SHMT1-206ENST00000579558 CDKN1BP46527 198 aa17.08■□□□□ 0.32
SHMT1-206ENST00000579558 MIR17HGQ75NE6 70 aa17.08■□□□□ 0.32
SHMT1-206ENST00000579558 SLC25A2Q9BXI2 301 aa17.08■□□□□ 0.32
SHMT1-206ENST00000579558 APLNQ9ULZ1 77 aa17.08■□□□□ 0.32
SHMT1-206ENST00000579558 TIMM9Q9Y5J7 89 aa17.08■□□□□ 0.32
SHMT1-206ENST00000579558 IGHV4-4A0A075B6R2 117 aa17.07■□□□□ 0.32
SHMT1-206ENST00000579558 IFNA5P01569 189 aa17.07■□□□□ 0.32
SHMT1-206ENST00000579558 RPP25LQ8N5L8 163 aaKnown RBP17.07■□□□□ 0.32
SHMT1-206ENST00000579558 SCGB1C1Q8TD33 95 aa17.07■□□□□ 0.32
SHMT1-206ENST00000579558 BLNKQ8WV28 456 aa17.07■□□□□ 0.32
SHMT1-206ENST00000579558 NIPSNAP3BQ9BS92 247 aa17.07■□□□□ 0.32
SHMT1-206ENST00000579558 MRPL32Q9BYC8 188 aaKnown RBP17.07■□□□□ 0.32
SHMT1-206ENST00000579558 MED28Q9H204 178 aa17.07■□□□□ 0.32
SHMT1-206ENST00000579558 PRM2P04554 102 aa17.06■□□□□ 0.32
SHMT1-206ENST00000579558 PDE6HQ13956 83 aa17.06■□□□□ 0.32
SHMT1-206ENST00000579558 TMEM256Q8N2U0 113 aa17.06■□□□□ 0.32
SHMT1-206ENST00000579558 FAM167A-AS1Q96KT0 104 aa17.06■□□□□ 0.32
SHMT1-206ENST00000579558 LINC01587Q99440 93 aa17.06■□□□□ 0.32
SHMT1-206ENST00000579558 NDUFB4O95168 129 aa17.05■□□□□ 0.32
SHMT1-206ENST00000579558 FCN2Q15485 313 aa17.05■□□□□ 0.32
SHMT1-206ENST00000579558 MRPL53Q96EL3 112 aaKnown RBP17.05■□□□□ 0.32
SHMT1-206ENST00000579558 PARD6GQ9BYG4 376 aaPredicted RBP17.05■□□□□ 0.32
SHMT1-206ENST00000579558 M0R3E3 92 aa17.04■□□□□ 0.32
SHMT1-206ENST00000579558 TSPOP30536 169 aa17.04■□□□□ 0.32
SHMT1-206ENST00000579558 FFAR4Q5NUL3 377 aa17.04■□□□□ 0.32
SHMT1-206ENST00000579558 OR51M1Q9H341 326 aa17.04■□□□□ 0.32
SHMT1-206ENST00000579558 PLA2G2EQ9NZK7 142 aa17.04■□□□□ 0.32
SHMT1-206ENST00000579558 FUT9Q9Y231 359 aa17.04■□□□□ 0.32
SHMT1-206ENST00000579558 PRELID1Q9Y255 219 aa17.04■□□□□ 0.32
SHMT1-206ENST00000579558 NPIPB6E9PJ23 425 aa17.03■□□□□ 0.32
SHMT1-206ENST00000579558 AAMDCQ9H7C9 122 aa17.03■□□□□ 0.32
SHMT1-206ENST00000579558 TAS2R60P59551 318 aa17.02■□□□□ 0.32
SHMT1-206ENST00000579558 KIR3DS1Q14943 382 aa17.02■□□□□ 0.32
SHMT1-206ENST00000579558 EXOC3-AS1Q8N2X6 119 aa17.02■□□□□ 0.32
SHMT1-206ENST00000579558 PAXXQ9BUH6 204 aa17.02■□□□□ 0.32
SHMT1-206ENST00000579558 WFDC1Q9HC57 220 aa17.02■□□□□ 0.32
SHMT1-206ENST00000579558 NBEAP1P0C6P0 100 aa17.01■□□□□ 0.31
SHMT1-206ENST00000579558 CT45A10P0DMU9 189 aa17.01■□□□□ 0.31
SHMT1-206ENST00000579558 HTN1P15515 57 aa17.01■□□□□ 0.31
SHMT1-206ENST00000579558 AZU1P20160 251 aa17.01■□□□□ 0.31
SHMT1-206ENST00000579558 LEPP41159 167 aa17.01■□□□□ 0.31
SHMT1-206ENST00000579558 DAD1P61803 113 aa17.01■□□□□ 0.31
SHMT1-206ENST00000579558 OXA1LQ15070 435 aa17.01■□□□□ 0.31
SHMT1-206ENST00000579558 ODF3Q96PU9 254 aa17.01■□□□□ 0.31
SHMT1-206ENST00000579558 C20orf144Q9BQM9 153 aa17.01■□□□□ 0.31
SHMT1-206ENST00000579558 J3KRW8 73 aa17■□□□□ 0.31
SHMT1-206ENST00000579558 OR7C2O60412 319 aa17■□□□□ 0.31
SHMT1-206ENST00000579558 OR10J4P0C629 311 aa17■□□□□ 0.31
SHMT1-206ENST00000579558 ICAM4Q14773 271 aa17■□□□□ 0.31
SHMT1-206ENST00000579558 GFI1BQ5VTD9 330 aa17■□□□□ 0.31
SHMT1-206ENST00000579558 RNF141Q8WVD5 230 aa17■□□□□ 0.31
SHMT1-206ENST00000579558 NDUFAF3Q9BU61 184 aa17■□□□□ 0.31
SHMT1-206ENST00000579558 LYRM9A8MSI8 78 aa16.99■□□□□ 0.31
SHMT1-206ENST00000579558 H7BYZ3 331 aa16.99■□□□□ 0.31
SHMT1-206ENST00000579558 HTN3P15516 51 aa16.99■□□□□ 0.31
SHMT1-206ENST00000579558 FXYD5Q96DB9 178 aa16.99■□□□□ 0.31
SHMT1-206ENST00000579558 PLAC8L1A1L4L8 177 aa16.98■□□□□ 0.31
SHMT1-206ENST00000579558 ERCC8Q13216 396 aa16.98■□□□□ 0.31
SHMT1-206ENST00000579558 FAM122CQ6P4D5 195 aa16.98■□□□□ 0.31
SHMT1-206ENST00000579558 C16orf74Q96GX8 76 aa16.98■□□□□ 0.31
SHMT1-206ENST00000579558 RGS21Q2M5E4 152 aa16.97■□□□□ 0.31
SHMT1-206ENST00000579558 PHYHIPLQ96FC7 376 aa16.97■□□□□ 0.31
SHMT1-206ENST00000579558 GIPP09681 153 aaPredicted RBP16.96■□□□□ 0.31
SHMT1-206ENST00000579558 TAS2R45P59539 299 aa16.96■□□□□ 0.31
SHMT1-206ENST00000579558 UBE2L3P68036 154 aaKnown RBP16.96■□□□□ 0.31
SHMT1-206ENST00000579558 KHDC3LQ587J8 217 aa16.96■□□□□ 0.31
SHMT1-206ENST00000579558 ZNF503Q96F45 646 aa16.96■□□□□ 0.31
SHMT1-206ENST00000579558 LINC00477Q96M19 166 aa16.96■□□□□ 0.31
SHMT1-206ENST00000579558 IGKV2-40A0A087WW87 121 aaPredicted RBP16.95■□□□□ 0.3
SHMT1-206ENST00000579558 TRAV12-3A0A0B4J271 114 aa16.95■□□□□ 0.3
SHMT1-206ENST00000579558 IGKV2D-40P01614 121 aaPredicted RBP16.95■□□□□ 0.3
SHMT1-206ENST00000579558 ACOT6Q3I5F7 207 aaPredicted RBP16.95■□□□□ 0.3
SHMT1-206ENST00000579558 ZNF493Q6ZR52 646 aa16.95■□□□□ 0.3
SHMT1-206ENST00000579558 TMEM263Q8WUH6 116 aaKnown RBP16.95■□□□□ 0.3
SHMT1-206ENST00000579558 ASB13Q8WXK3 278 aa16.95■□□□□ 0.3
SHMT1-206ENST00000579558 FAM210BQ96KR6 192 aa16.95■□□□□ 0.3
SHMT1-206ENST00000579558 AQP10Q96PS8 301 aa16.95■□□□□ 0.3
SHMT1-206ENST00000579558 AGPAT4-IT1Q9H0P7 198 aa16.95■□□□□ 0.3
SHMT1-206ENST00000579558 DEFB130BP0DP73 79 aa16.94■□□□□ 0.3
SHMT1-206ENST00000579558 DEFB130AP0DP74 79 aa16.94■□□□□ 0.3
SHMT1-206ENST00000579558 ZNF266Q14584 549 aa16.94■□□□□ 0.3
SHMT1-206ENST00000579558 Q5BKY6 102 aa16.94■□□□□ 0.3
SHMT1-206ENST00000579558 CCDC28AQ8IWP9 274 aa16.94■□□□□ 0.3
SHMT1-206ENST00000579558 RNASE8Q8TDE3 154 aaKnown RBP16.94■□□□□ 0.3
SHMT1-206ENST00000579558 KMT2AQ03164 3969 aa16.93■□□□□ 0.3
SHMT1-206ENST00000579558 VPS13DQ5THJ4 4388 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms