RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 SPANXDQ9BXN6 97 aa2.91□□□□□ -1.94
NUP88-213ENST00000576862 MRPL20Q9BYC9 149 aaKnown RBP2.91□□□□□ -1.94
NUP88-213ENST00000576862 NKX6-2Q9C056 277 aaPredicted RBP2.91□□□□□ -1.94
NUP88-213ENST00000576862 OR5AC2Q9NZP5 309 aa2.91□□□□□ -1.94
NUP88-213ENST00000576862 TNFSF18Q9UNG2 199 aa2.91□□□□□ -1.94
NUP88-213ENST00000576862 V9GYH0 126 aa2.91□□□□□ -1.94
NUP88-213ENST00000576862 CNOT1A5YKK6 2376 aaKnown RBP2.91□□□□□ -1.94
NUP88-213ENST00000576862 UNC13CQ8NB66 2214 aa2.91□□□□□ -1.94
NUP88-213ENST00000576862 IGHV3-15A0A0B4J1V0 119 aa2.9□□□□□ -1.95
NUP88-213ENST00000576862 DPM2O94777 84 aa2.9□□□□□ -1.95
NUP88-213ENST00000576862 FKBP2P26885 142 aaKnown RBP2.9□□□□□ -1.95
NUP88-213ENST00000576862 ATP6V0CP27449 155 aa2.9□□□□□ -1.95
NUP88-213ENST00000576862 OPRM1P35372 400 aa2.9□□□□□ -1.95
NUP88-213ENST00000576862 ETV6P41212 452 aa2.9□□□□□ -1.95
NUP88-213ENST00000576862 LPAR6P43657 344 aa2.9□□□□□ -1.95
NUP88-213ENST00000576862 GNG4P50150 75 aa2.9□□□□□ -1.95
NUP88-213ENST00000576862 RHOGP84095 191 aa2.9□□□□□ -1.95
NUP88-213ENST00000576862 ABCA11PQ4W5N1 156 aa2.9□□□□□ -1.95
NUP88-213ENST00000576862 COA6Q5JTJ3 125 aaKnown RBP2.9□□□□□ -1.95
NUP88-213ENST00000576862 RPL22L1Q6P5R6 122 aaKnown RBP2.9□□□□□ -1.95
NUP88-213ENST00000576862 ATP5L2Q7Z4Y8 100 aa2.9□□□□□ -1.95
NUP88-213ENST00000576862 ZNF664Q8N3J9 261 aa2.9□□□□□ -1.95
NUP88-213ENST00000576862 C9orf62Q8N4C0 152 aa2.9□□□□□ -1.95
NUP88-213ENST00000576862 YIPF7Q8N8F6 280 aa2.9□□□□□ -1.95
NUP88-213ENST00000576862 OR10AC1Q8NH08 325 aa2.9□□□□□ -1.95
NUP88-213ENST00000576862 S100ZQ8WXG8 99 aa2.9□□□□□ -1.95
NUP88-213ENST00000576862 HSD17B10Q99714 261 aaKnown RBP2.9□□□□□ -1.95
NUP88-213ENST00000576862 TMEM133Q9H2Q1 129 aa2.9□□□□□ -1.95
NUP88-213ENST00000576862 RNF122Q9H9V4 155 aa2.9□□□□□ -1.95
NUP88-213ENST00000576862 KCNIP2Q9NS61 270 aa2.9□□□□□ -1.95
NUP88-213ENST00000576862 TAAR3PQ9P1P4 343 aa2.9□□□□□ -1.95
NUP88-213ENST00000576862 F11RQ9Y624 299 aaKnown RBP2.9□□□□□ -1.95
NUP88-213ENST00000576862 FRYLO94915 3013 aa2.9□□□□□ -1.95
NUP88-213ENST00000576862 COL5A1P20908 1838 aaPredicted RBP2.9□□□□□ -1.95
NUP88-213ENST00000576862 SPTBN2O15020 2390 aa2.9□□□□□ -1.95
NUP88-213ENST00000576862 LAMA1P25391 3075 aa2.9□□□□□ -1.95
NUP88-213ENST00000576862 COL27A1Q8IZC6 1860 aaPredicted RBP2.9□□□□□ -1.95
NUP88-213ENST00000576862 VPS13AQ96RL7 3174 aa2.89□□□□□ -1.95
NUP88-213ENST00000576862 TRAV1-2A0A0B4J238 106 aa2.89□□□□□ -1.95
NUP88-213ENST00000576862 A0A1B0GW64 132 aa2.89□□□□□ -1.95
NUP88-213ENST00000576862 TMEM212A6NML5 194 aa2.89□□□□□ -1.95
NUP88-213ENST00000576862 LEUTXA8MZ59 168 aa2.89□□□□□ -1.95
NUP88-213ENST00000576862 KRBOX1C9JBD0 128 aa2.89□□□□□ -1.95
NUP88-213ENST00000576862 H3BSH0 61 aa2.89□□□□□ -1.95
NUP88-213ENST00000576862 GSTZ1O43708 216 aaPredicted RBP2.89□□□□□ -1.95
NUP88-213ENST00000576862 CXorf1O96002 111 aa2.89□□□□□ -1.95
NUP88-213ENST00000576862 PTPRZ1P23471 2315 aaPredicted RBP2.89□□□□□ -1.95
NUP88-213ENST00000576862 PSMB3P49720 205 aa2.89□□□□□ -1.95
NUP88-213ENST00000576862 UBE2NP61088 152 aaKnown RBP2.89□□□□□ -1.95
NUP88-213ENST00000576862 TMEM241Q24JQ0 296 aa2.89□□□□□ -1.95
NUP88-213ENST00000576862 UBE2NLQ5JXB2 153 aa2.89□□□□□ -1.95
NUP88-213ENST00000576862 COL5A1-AS1Q5SY13 56 aa2.89□□□□□ -1.95
NUP88-213ENST00000576862 LDLRAD2Q5SZI1 272 aa2.89□□□□□ -1.95
NUP88-213ENST00000576862 NCMAPQ5T1S8 102 aa2.89□□□□□ -1.95
NUP88-213ENST00000576862 AMMECR1LQ6DCA0 310 aa2.89□□□□□ -1.95
NUP88-213ENST00000576862 ZNF493Q6ZR52 646 aa2.89□□□□□ -1.95
NUP88-213ENST00000576862 LHFPL1Q86WI0 220 aa2.89□□□□□ -1.95
NUP88-213ENST00000576862 OR51A4Q8NGJ6 313 aa2.89□□□□□ -1.95
NUP88-213ENST00000576862 RTN4IP1Q8WWV3 396 aaPredicted RBP2.89□□□□□ -1.95
NUP88-213ENST00000576862 PP6455Q8WZ26 134 aa2.89□□□□□ -1.95
NUP88-213ENST00000576862 KCNS1Q96KK3 526 aa2.89□□□□□ -1.95
NUP88-213ENST00000576862 C2orf50Q96LR7 162 aa2.89□□□□□ -1.95
NUP88-213ENST00000576862 IGF2BP2-AS1Q96M15 143 aa2.89□□□□□ -1.95
NUP88-213ENST00000576862 SNHG12Q9BXW3 62 aa2.89□□□□□ -1.95
NUP88-213ENST00000576862 TTTY12Q9BZ98 90 aa2.89□□□□□ -1.95
NUP88-213ENST00000576862 EDA2RQ9HAV5 297 aa2.89□□□□□ -1.95
NUP88-213ENST00000576862 COMMD3Q9UBI1 195 aa2.89□□□□□ -1.95
NUP88-213ENST00000576862 NAT8Q9UHE5 227 aa2.89□□□□□ -1.95
NUP88-213ENST00000576862 AK3Q9UIJ7 227 aa2.89□□□□□ -1.95
NUP88-213ENST00000576862 ANAPC10Q9UM13 185 aa2.89□□□□□ -1.95
NUP88-213ENST00000576862 BOKQ9UMX3 212 aaPredicted RBP2.89□□□□□ -1.95
NUP88-213ENST00000576862 LHFPL6Q9Y693 200 aa2.89□□□□□ -1.95
NUP88-213ENST00000576862 TMEM14AQ9Y6G1 99 aa2.89□□□□□ -1.95
NUP88-213ENST00000576862 V9GYS6 101 aa2.89□□□□□ -1.95
NUP88-213ENST00000576862 PI4KAP42356 2102 aa2.89□□□□□ -1.95
NUP88-213ENST00000576862 NCOR2Q9Y618 2525 aa2.88□□□□□ -1.95
NUP88-213ENST00000576862 MYO15AQ9UKN7 3530 aa2.88□□□□□ -1.95
NUP88-213ENST00000576862 LOC107986453A0A1B0GWG9 222 aa2.88□□□□□ -1.95
NUP88-213ENST00000576862 MEIS3P1A6NDR6 274 aa2.88□□□□□ -1.95
NUP88-213ENST00000576862 A6NIN4 97 aa2.88□□□□□ -1.95
NUP88-213ENST00000576862 RER1O15258 196 aa2.88□□□□□ -1.95
NUP88-213ENST00000576862 IL7P13232 177 aa2.88□□□□□ -1.95
NUP88-213ENST00000576862 HIST1H1DP16402 221 aaKnown RBP2.88□□□□□ -1.95
NUP88-213ENST00000576862 INPP1P49441 399 aa2.88□□□□□ -1.95
NUP88-213ENST00000576862 RAB5CP51148 216 aa2.88□□□□□ -1.95
NUP88-213ENST00000576862 HERVK_113P63121 156 aa2.88□□□□□ -1.95
NUP88-213ENST00000576862 PLGLB1Q02325 96 aa2.88□□□□□ -1.95
NUP88-213ENST00000576862 SLC38A11Q08AI6 406 aa2.88□□□□□ -1.95
NUP88-213ENST00000576862 LY6EQ16553 131 aa2.88□□□□□ -1.95
NUP88-213ENST00000576862 LINC00303Q3SY05 128 aa2.88□□□□□ -1.95
NUP88-213ENST00000576862 C10orf128Q5T292 105 aa2.88□□□□□ -1.95
NUP88-213ENST00000576862 Q5XG85 94 aa2.88□□□□□ -1.95
NUP88-213ENST00000576862 HRCT1Q6UXD1 115 aa2.88□□□□□ -1.95
NUP88-213ENST00000576862 PRR15Q8IV56 129 aa2.88□□□□□ -1.95
NUP88-213ENST00000576862 DRAM1Q8N682 238 aa2.88□□□□□ -1.95
NUP88-213ENST00000576862 TMEM75Q8N9X5 138 aa2.88□□□□□ -1.95
NUP88-213ENST00000576862 ZFP62Q8NB50 900 aaPredicted RBP2.88□□□□□ -1.95
NUP88-213ENST00000576862 FDCSPQ8NFU4 85 aa2.88□□□□□ -1.95
NUP88-213ENST00000576862 OR4S1Q8NGB4 309 aa2.88□□□□□ -1.95
NUP88-213ENST00000576862 OR4C16Q8NGL9 310 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 161.1 ms