RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 TMEM263Q8WUH6 116 aaKnown RBP14.69□□□□□ -0.06
VPS53-216ENST00000574029 RPUSD4Q96CM3 377 aaKnown RBP14.69□□□□□ -0.06
VPS53-216ENST00000574029 ARL6Q9H0F7 186 aa14.69□□□□□ -0.06
VPS53-216ENST00000574029 RNF24Q9Y225 148 aa14.69□□□□□ -0.06
VPS53-216ENST00000574029 SSNA1O43805 119 aa14.68□□□□□ -0.06
VPS53-216ENST00000574029 PRB4P10163 310 aaPredicted RBP14.68□□□□□ -0.06
VPS53-216ENST00000574029 CXCL2P19875 107 aa14.68□□□□□ -0.06
VPS53-216ENST00000574029 RRAS2P62070 204 aaPredicted RBP14.68□□□□□ -0.06
VPS53-216ENST00000574029 ARL16Q0P5N6 197 aa14.68□□□□□ -0.06
VPS53-216ENST00000574029 SSX7Q7RTT5 188 aa14.68□□□□□ -0.06
VPS53-216ENST00000574029 ARV1Q9H2C2 271 aa14.68□□□□□ -0.06
VPS53-216ENST00000574029 NOP10Q9NPE3 64 aaKnown RBP14.68□□□□□ -0.06
VPS53-216ENST00000574029 LYRM2Q9NU23 88 aaPredicted RBP14.68□□□□□ -0.06
VPS53-216ENST00000574029 H7BYZ3 331 aa14.67□□□□□ -0.06
VPS53-216ENST00000574029 BCAP31P51572 246 aa14.67□□□□□ -0.06
VPS53-216ENST00000574029 H2BFSP57053 126 aa14.67□□□□□ -0.06
VPS53-216ENST00000574029 S100A10P60903 97 aa14.67□□□□□ -0.06
VPS53-216ENST00000574029 CLINT1Q14677 625 aa14.67□□□□□ -0.06
VPS53-216ENST00000574029 PXDC1Q5TGL8 231 aa14.67□□□□□ -0.06
VPS53-216ENST00000574029 LINC00612Q8N6U2 182 aa14.67□□□□□ -0.06
VPS53-216ENST00000574029 C20orf144Q9BQM9 153 aa14.67□□□□□ -0.06
VPS53-216ENST00000574029 ZNF331Q9NQX6 463 aaPredicted RBP14.67□□□□□ -0.06
VPS53-216ENST00000574029 MGAT4CQ9UBM8 478 aa14.67□□□□□ -0.06
VPS53-216ENST00000574029 FAM24AA6NFZ4 105 aa14.66□□□□□ -0.06
VPS53-216ENST00000574029 RLN2P04090 185 aa14.66□□□□□ -0.06
VPS53-216ENST00000574029 CAV2P51636 162 aa14.66□□□□□ -0.06
VPS53-216ENST00000574029 SLC38A11Q08AI6 406 aa14.66□□□□□ -0.06
VPS53-216ENST00000574029 TEPPQ6URK8 271 aa14.66□□□□□ -0.06
VPS53-216ENST00000574029 LCN15Q6UWW0 184 aa14.66□□□□□ -0.06
VPS53-216ENST00000574029 Q9H8V8 135 aa14.66□□□□□ -0.06
VPS53-216ENST00000574029 KIR3DS1Q14943 382 aa14.65□□□□□ -0.06
VPS53-216ENST00000574029 TMEM252Q8N6L7 170 aa14.65□□□□□ -0.06
VPS53-216ENST00000574029 MAPKAPK5-AS1Q8N8E1 139 aa14.65□□□□□ -0.06
VPS53-216ENST00000574029 OR10J6PQ8NGY7 276 aa14.65□□□□□ -0.06
VPS53-216ENST00000574029 SLC50A1Q9BRV3 221 aa14.65□□□□□ -0.06
VPS53-216ENST00000574029 ALG5Q9Y673 324 aa14.65□□□□□ -0.06
VPS53-216ENST00000574029 SULT1A1P50225 295 aa14.64□□□□□ -0.07
VPS53-216ENST00000574029 LINC00305Q7Z4B0 112 aa14.64□□□□□ -0.07
VPS53-216ENST00000574029 GNPNAT1Q96EK6 184 aaPredicted RBP14.64□□□□□ -0.07
VPS53-216ENST00000574029 ZNF503Q96F45 646 aa14.64□□□□□ -0.07
VPS53-216ENST00000574029 E5RGE8 158 aa14.63□□□□□ -0.07
VPS53-216ENST00000574029 CST7O76096 145 aa14.63□□□□□ -0.07
VPS53-216ENST00000574029 S100A11P31949 105 aa14.63□□□□□ -0.07
VPS53-216ENST00000574029 OR5I1Q13606 314 aa14.63□□□□□ -0.07
VPS53-216ENST00000574029 ZNF546Q86UE3 836 aa14.63□□□□□ -0.07
VPS53-216ENST00000574029 RXFP4Q8TDU9 374 aa14.63□□□□□ -0.07
VPS53-216ENST00000574029 LRP1BQ9NZR2 4599 aa14.62□□□□□ -0.07
VPS53-216ENST00000574029 TRAV26-1A0A087WT03 109 aa14.62□□□□□ -0.07
VPS53-216ENST00000574029 IGSF23A1L1A6 192 aa14.62□□□□□ -0.07
VPS53-216ENST00000574029 H0YIZ8 118 aa14.62□□□□□ -0.07
VPS53-216ENST00000574029 AGPAT2O15120 278 aa14.62□□□□□ -0.07
VPS53-216ENST00000574029 SNRPCP09234 159 aaKnown RBP14.62□□□□□ -0.07
VPS53-216ENST00000574029 M6PRP20645 277 aa14.62□□□□□ -0.07
VPS53-216ENST00000574029 RGS21Q2M5E4 152 aa14.62□□□□□ -0.07
VPS53-216ENST00000574029 VWC2Q2TAL6 325 aa14.62□□□□□ -0.07
VPS53-216ENST00000574029 GFI1BQ5VTD9 330 aa14.62□□□□□ -0.07
VPS53-216ENST00000574029 BPIFA4PQ86YQ2 179 aa14.62□□□□□ -0.07
VPS53-216ENST00000574029 PPP1R1CQ8WVI7 109 aa14.62□□□□□ -0.07
VPS53-216ENST00000574029 PARD6GQ9BYG4 376 aaPredicted RBP14.62□□□□□ -0.07
VPS53-216ENST00000574029 KRTAP1-5Q9BYS1 174 aa14.62□□□□□ -0.07
VPS53-216ENST00000574029 PRAC2D3DTV9 90 aa14.61□□□□□ -0.07
VPS53-216ENST00000574029 HOXA5P20719 270 aa14.61□□□□□ -0.07
VPS53-216ENST00000574029 HBG1P69891 147 aa14.61□□□□□ -0.07
VPS53-216ENST00000574029 HBG2P69892 147 aa14.61□□□□□ -0.07
VPS53-216ENST00000574029 ATP6V1FQ16864 119 aa14.61□□□□□ -0.07
VPS53-216ENST00000574029 TTC32Q5I0X7 151 aa14.61□□□□□ -0.07
VPS53-216ENST00000574029 SPATA12Q7Z6I5 190 aa14.61□□□□□ -0.07
VPS53-216ENST00000574029 STX12Q86Y82 276 aa14.61□□□□□ -0.07
VPS53-216ENST00000574029 CCDC28AQ8IWP9 274 aa14.61□□□□□ -0.07
VPS53-216ENST00000574029 UPK3BQ9BT76 320 aa14.61□□□□□ -0.07
VPS53-216ENST00000574029 Q9H3A6 140 aa14.61□□□□□ -0.07
VPS53-216ENST00000574029 OR5AC2Q9NZP5 309 aa14.61□□□□□ -0.07
VPS53-216ENST00000574029 H3BNG1 76 aa14.6□□□□□ -0.07
VPS53-216ENST00000574029 SLC17A3O00476 420 aa14.6□□□□□ -0.07
VPS53-216ENST00000574029 LRRC37A5PQ49AS3 106 aa14.6□□□□□ -0.07
VPS53-216ENST00000574029 TMEM37Q8WXS4 190 aa14.6□□□□□ -0.07
VPS53-216ENST00000574029 SLC25A31Q9H0C2 315 aa14.6□□□□□ -0.07
VPS53-216ENST00000574029 A0A0J9YY99 117 aa14.59□□□□□ -0.07
VPS53-216ENST00000574029 MPC2O95563 127 aa14.59□□□□□ -0.07
VPS53-216ENST00000574029 IGLC2P0DOY2 106 aa14.59□□□□□ -0.07
VPS53-216ENST00000574029 ESRGQ1W209 222 aa14.59□□□□□ -0.07
VPS53-216ENST00000574029 MORN5Q5VZ52 161 aa14.59□□□□□ -0.07
VPS53-216ENST00000574029 Q8N1X5 172 aa14.59□□□□□ -0.07
VPS53-216ENST00000574029 CHAC2Q8WUX2 184 aa14.59□□□□□ -0.07
VPS53-216ENST00000574029 SAT2Q96F10 170 aaPredicted RBP14.59□□□□□ -0.07
VPS53-216ENST00000574029 MGST2Q99735 147 aa14.59□□□□□ -0.07
VPS53-216ENST00000574029 UQCC1Q9NVA1 299 aa14.59□□□□□ -0.07
VPS53-216ENST00000574029 WDR83OSQ9Y284 106 aa14.59□□□□□ -0.07
VPS53-216ENST00000574029 PXMP4Q9Y6I8 212 aa14.59□□□□□ -0.07
VPS53-216ENST00000574029 A0A1W2PPQ1 181 aa14.58□□□□□ -0.08
VPS53-216ENST00000574029 GAGE12BA1L429 117 aa14.58□□□□□ -0.08
VPS53-216ENST00000574029 H3BTX0 84 aa14.58□□□□□ -0.08
VPS53-216ENST00000574029 COX7A2P2O60397 106 aa14.58□□□□□ -0.08
VPS53-216ENST00000574029 GAGE7O76087 117 aa14.58□□□□□ -0.08
VPS53-216ENST00000574029 GAGE12FP0CL80 117 aa14.58□□□□□ -0.08
VPS53-216ENST00000574029 GAGE12GP0CL81 117 aa14.58□□□□□ -0.08
VPS53-216ENST00000574029 GAGE12IP0CL82 117 aa14.58□□□□□ -0.08
VPS53-216ENST00000574029 PET100P0DJ07 73 aa14.58□□□□□ -0.08
VPS53-216ENST00000574029 NHLH2Q02577 135 aa14.58□□□□□ -0.08
VPS53-216ENST00000574029 OPCMLQ14982 345 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms