RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 WRBO00258 174 aa10.77□□□□□ -0.69
CLK3-223ENST00000568488 TEPPQ6URK8 271 aa10.77□□□□□ -0.69
CLK3-223ENST00000568488 SCXQ7RTU7 201 aa10.77□□□□□ -0.69
CLK3-223ENST00000568488 S100A7AQ86SG5 101 aa10.77□□□□□ -0.69
CLK3-223ENST00000568488 EIF4E3Q8N5X7 224 aaKnown RBP10.77□□□□□ -0.69
CLK3-223ENST00000568488 LRTM2Q8N967 370 aa10.77□□□□□ -0.69
CLK3-223ENST00000568488 MRPL32Q9BYC8 188 aaKnown RBP10.77□□□□□ -0.69
CLK3-223ENST00000568488 ARL6Q9H0F7 186 aa10.77□□□□□ -0.69
CLK3-223ENST00000568488 MRPS12O15235 138 aaKnown RBP10.76□□□□□ -0.69
CLK3-223ENST00000568488 GYPEP15421 78 aa10.76□□□□□ -0.69
CLK3-223ENST00000568488 CXCL2P19875 107 aa10.76□□□□□ -0.69
CLK3-223ENST00000568488 KRTAP10-4P60372 401 aaPredicted RBP10.76□□□□□ -0.69
CLK3-223ENST00000568488 SPANXN5Q5MJ07 72 aa10.76□□□□□ -0.69
CLK3-223ENST00000568488 ACOT7LQ6ZUV0 252 aa10.76□□□□□ -0.69
CLK3-223ENST00000568488 EXTL2Q9UBQ6 330 aa10.76□□□□□ -0.69
CLK3-223ENST00000568488 C7orf71A4D174 169 aa10.75□□□□□ -0.69
CLK3-223ENST00000568488 MED6O75586 246 aa10.75□□□□□ -0.69
CLK3-223ENST00000568488 SLC25A5P05141 298 aaKnown RBP10.75□□□□□ -0.69
CLK3-223ENST00000568488 TCL1AP56279 114 aa10.75□□□□□ -0.69
CLK3-223ENST00000568488 ANXA2RQ3ZCQ2 193 aa10.75□□□□□ -0.69
CLK3-223ENST00000568488 MZT2AQ6P582 158 aa10.75□□□□□ -0.69
CLK3-223ENST00000568488 ODF3Q96PU9 254 aa10.75□□□□□ -0.69
CLK3-223ENST00000568488 VGLL1Q99990 258 aa10.75□□□□□ -0.69
CLK3-223ENST00000568488 LRP2P98164 4655 aa10.74□□□□□ -0.69
CLK3-223ENST00000568488 IBA57-AS1B1ANH7 110 aa10.74□□□□□ -0.69
CLK3-223ENST00000568488 SLC17A3O00476 420 aa10.74□□□□□ -0.69
CLK3-223ENST00000568488 PITX3O75364 302 aa10.74□□□□□ -0.69
CLK3-223ENST00000568488 PLP1P60201 277 aa10.74□□□□□ -0.69
CLK3-223ENST00000568488 LINC01620Q4KN68 170 aa10.74□□□□□ -0.69
CLK3-223ENST00000568488 PATE2Q6UY27 113 aa10.74□□□□□ -0.69
CLK3-223ENST00000568488 YIPF6Q96EC8 236 aa10.74□□□□□ -0.69
CLK3-223ENST00000568488 CIB3Q96Q77 187 aaPredicted RBP10.74□□□□□ -0.69
CLK3-223ENST00000568488 ARV1Q9H2C2 271 aa10.74□□□□□ -0.69
CLK3-223ENST00000568488 RNF24Q9Y225 148 aa10.74□□□□□ -0.69
CLK3-223ENST00000568488 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.73□□□□□ -0.69
CLK3-223ENST00000568488 IGHV3-38A0A0C4DH36 116 aa10.73□□□□□ -0.69
CLK3-223ENST00000568488 H3BP45 60 aa10.73□□□□□ -0.69
CLK3-223ENST00000568488 ANXA3P12429 323 aa10.73□□□□□ -0.69
CLK3-223ENST00000568488 RNASE4P34096 147 aaKnown RBP10.73□□□□□ -0.69
CLK3-223ENST00000568488 NCS1P62166 190 aa10.73□□□□□ -0.69
CLK3-223ENST00000568488 SELENOTP62341 195 aa10.73□□□□□ -0.69
CLK3-223ENST00000568488 CD300CQ08708 224 aa10.73□□□□□ -0.69
CLK3-223ENST00000568488 BTN1A1Q13410 526 aa10.73□□□□□ -0.69
CLK3-223ENST00000568488 Q9H521 79 aa10.73□□□□□ -0.69
CLK3-223ENST00000568488 TP53TG3Q9ULZ0 132 aa10.73□□□□□ -0.69
CLK3-223ENST00000568488 SYNGR2O43760 224 aa10.72□□□□□ -0.69
CLK3-223ENST00000568488 MPDU1O75352 247 aa10.72□□□□□ -0.69
CLK3-223ENST00000568488 SFTA3P0C7M3 94 aa10.72□□□□□ -0.69
CLK3-223ENST00000568488 SRPXP78539 464 aa10.72□□□□□ -0.69
CLK3-223ENST00000568488 WFDC2Q14508 124 aa10.72□□□□□ -0.69
CLK3-223ENST00000568488 BPIFA4PQ86YQ2 179 aa10.72□□□□□ -0.69
CLK3-223ENST00000568488 OR51S1Q8NGJ8 323 aa10.72□□□□□ -0.69
CLK3-223ENST00000568488 C15orf40Q8WUR7 153 aa10.72□□□□□ -0.69
CLK3-223ENST00000568488 PRRT1Q99946 306 aa10.72□□□□□ -0.69
CLK3-223ENST00000568488 TXNDC17Q9BRA2 123 aa10.72□□□□□ -0.69
CLK3-223ENST00000568488 STRAPQ9Y3F4 350 aaKnown RBP10.72□□□□□ -0.69
CLK3-223ENST00000568488 LECT2O14960 151 aa10.71□□□□□ -0.69
CLK3-223ENST00000568488 RS1O15537 224 aa10.71□□□□□ -0.69
CLK3-223ENST00000568488 ORM1P02763 201 aa10.71□□□□□ -0.69
CLK3-223ENST00000568488 AKAIN1P0CW23 69 aa10.71□□□□□ -0.69
CLK3-223ENST00000568488 VBP1P61758 197 aa10.71□□□□□ -0.69
CLK3-223ENST00000568488 ERCC8Q13216 396 aa10.71□□□□□ -0.69
CLK3-223ENST00000568488 IBA57Q5T440 356 aaKnown RBP10.71□□□□□ -0.69
CLK3-223ENST00000568488 LINC00305Q7Z4B0 112 aa10.71□□□□□ -0.69
CLK3-223ENST00000568488 CLVS1Q8IUQ0 354 aaPredicted RBP10.71□□□□□ -0.69
CLK3-223ENST00000568488 BLNKQ8WV28 456 aa10.71□□□□□ -0.69
CLK3-223ENST00000568488 DNAJC4Q9NNZ3 241 aa10.71□□□□□ -0.69
CLK3-223ENST00000568488 PXMP4Q9Y6I8 212 aa10.71□□□□□ -0.69
CLK3-223ENST00000568488 RGS13O14921 159 aa10.7□□□□□ -0.7
CLK3-223ENST00000568488 ZNF479Q96JC4 524 aa10.7□□□□□ -0.7
CLK3-223ENST00000568488 SCGB3A2Q96PL1 93 aa10.7□□□□□ -0.7
CLK3-223ENST00000568488 ARPC5LQ9BPX5 153 aa10.7□□□□□ -0.7
CLK3-223ENST00000568488 CHAC1Q9BUX1 264 aa10.7□□□□□ -0.7
CLK3-223ENST00000568488 IGHV3-30P01768 117 aa10.69□□□□□ -0.7
CLK3-223ENST00000568488 IGHV3-33P01772 117 aa10.69□□□□□ -0.7
CLK3-223ENST00000568488 GPX1P07203 203 aa10.69□□□□□ -0.7
CLK3-223ENST00000568488 IGHV3-30-3P0DP02 117 aa10.69□□□□□ -0.7
CLK3-223ENST00000568488 IGHV3-30-5P0DP03 117 aa10.69□□□□□ -0.7
CLK3-223ENST00000568488 PPT1P50897 306 aa10.69□□□□□ -0.7
CLK3-223ENST00000568488 RRAS2P62070 204 aaPredicted RBP10.69□□□□□ -0.7
CLK3-223ENST00000568488 SSBP1Q04837 148 aaKnown RBP10.69□□□□□ -0.7
CLK3-223ENST00000568488 LINC01556Q5JQF7 62 aa10.69□□□□□ -0.7
CLK3-223ENST00000568488 TM2D2Q9BX73 214 aa10.69□□□□□ -0.7
CLK3-223ENST00000568488 SLC25A31Q9H0C2 315 aa10.69□□□□□ -0.7
CLK3-223ENST00000568488 C9JCJ5 164 aa10.68□□□□□ -0.7
CLK3-223ENST00000568488 H3BQ15 152 aa10.68□□□□□ -0.7
CLK3-223ENST00000568488 IGLV2-8P01709 118 aa10.68□□□□□ -0.7
CLK3-223ENST00000568488 TNFSF8P32971 234 aa10.68□□□□□ -0.7
CLK3-223ENST00000568488 NHLRC2Q8NBF2 726 aa10.68□□□□□ -0.7
CLK3-223ENST00000568488 CIRBP-AS1Q8TBR5 109 aa10.68□□□□□ -0.7
CLK3-223ENST00000568488 IGHV1OR15-1A0A075B7D0 117 aa10.67□□□□□ -0.7
CLK3-223ENST00000568488 TRAV8-6A0A0B4J262 113 aa10.67□□□□□ -0.7
CLK3-223ENST00000568488 PIGBOS1A0A0B4J2F0 54 aa10.67□□□□□ -0.7
CLK3-223ENST00000568488 DUXBA0A1W2PPF3 345 aa10.67□□□□□ -0.7
CLK3-223ENST00000568488 KLLNB2CW77 178 aa10.67□□□□□ -0.7
CLK3-223ENST00000568488 GOSR2O14653 212 aa10.67□□□□□ -0.7
CLK3-223ENST00000568488 OR4E1P0C645 316 aa10.67□□□□□ -0.7
CLK3-223ENST00000568488 SLC38A11Q08AI6 406 aa10.67□□□□□ -0.7
CLK3-223ENST00000568488 OR10J3Q5JRS4 329 aa10.67□□□□□ -0.7
CLK3-223ENST00000568488 IQCF2Q8IXL9 164 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 111.9 ms