RNA–Protein interactions for RNA: ENST00000567060.5

CLN6-208, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 945 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-208ENST00000567060 ARL14EPLP0DKL9 152 aa12.33□□□□□ -0.44
CLN6-208ENST00000567060 NUTF2P61970 127 aaKnown RBP12.33□□□□□ -0.44
CLN6-208ENST00000567060 FAM74A1Q5RGS3 127 aa12.33□□□□□ -0.44
CLN6-208ENST00000567060 TRPT1Q86TN4 253 aaKnown RBP12.33□□□□□ -0.44
CLN6-208ENST00000567060 ZNF738Q8NE65 137 aa12.33□□□□□ -0.44
CLN6-208ENST00000567060 MUC7Q8TAX7 377 aa12.33□□□□□ -0.44
CLN6-208ENST00000567060 RBMY1BA6NDE4 496 aaKnown RBP12.32□□□□□ -0.44
CLN6-208ENST00000567060 RBMY1EA6NEQ0 496 aaKnown RBP12.32□□□□□ -0.44
CLN6-208ENST00000567060 H3BMM0 161 aa12.32□□□□□ -0.44
CLN6-208ENST00000567060 SLC17A3O00476 420 aa12.32□□□□□ -0.44
CLN6-208ENST00000567060 RBMY1DP0C7P1 496 aaKnown RBP12.32□□□□□ -0.44
CLN6-208ENST00000567060 GCHFRP30047 84 aa12.32□□□□□ -0.44
CLN6-208ENST00000567060 SULT1A2P50226 295 aa12.32□□□□□ -0.44
CLN6-208ENST00000567060 ACTL10Q5JWF8 245 aa12.32□□□□□ -0.44
CLN6-208ENST00000567060 BLNKQ8WV28 456 aa12.32□□□□□ -0.44
CLN6-208ENST00000567060 MBD3L1Q8WWY6 194 aa12.32□□□□□ -0.44
CLN6-208ENST00000567060 A0A0J9YX75 114 aa12.31□□□□□ -0.44
CLN6-208ENST00000567060 MAP1LC3B2A6NCE7 125 aa12.31□□□□□ -0.44
CLN6-208ENST00000567060 A8MTW9 85 aa12.31□□□□□ -0.44
CLN6-208ENST00000567060 TEX46H3BTG2 121 aa12.31□□□□□ -0.44
CLN6-208ENST00000567060 ZNF726P1Q15940 193 aa12.31□□□□□ -0.44
CLN6-208ENST00000567060 RXFP4Q8TDU9 374 aa12.31□□□□□ -0.44
CLN6-208ENST00000567060 RPUSD4Q96CM3 377 aaKnown RBP12.31□□□□□ -0.44
CLN6-208ENST00000567060 C20orf173Q96LM9 149 aa12.31□□□□□ -0.44
CLN6-208ENST00000567060 NKX6-2Q9C056 277 aaPredicted RBP12.31□□□□□ -0.44
CLN6-208ENST00000567060 MAP1LC3BQ9GZQ8 125 aa12.31□□□□□ -0.44
CLN6-208ENST00000567060 ARL2-SNX15V9GYD0 113 aa12.31□□□□□ -0.44
CLN6-208ENST00000567060 CSN1S1P47710 185 aa12.3□□□□□ -0.44
CLN6-208ENST00000567060 NKX2-5P52952 324 aaPredicted RBP12.3□□□□□ -0.44
CLN6-208ENST00000567060 RNF182Q8N6D2 247 aa12.3□□□□□ -0.44
CLN6-208ENST00000567060 OR8A1Q8NGG7 326 aa12.3□□□□□ -0.44
CLN6-208ENST00000567060 C1QTNF4Q9BXJ3 329 aa12.3□□□□□ -0.44
CLN6-208ENST00000567060 CSTL1Q9H114 145 aa12.3□□□□□ -0.44
CLN6-208ENST00000567060 OTORQ9NRC9 128 aa12.3□□□□□ -0.44
CLN6-208ENST00000567060 TRAV1-1A0A0B4J248 108 aa12.29□□□□□ -0.44
CLN6-208ENST00000567060 A0A1W2PRE2 83 aa12.29□□□□□ -0.44
CLN6-208ENST00000567060 KNCNA6PVL3 124 aa12.29□□□□□ -0.44
CLN6-208ENST00000567060 H3BTX0 84 aa12.29□□□□□ -0.44
CLN6-208ENST00000567060 HMGB3O15347 200 aaKnown RBP12.29□□□□□ -0.44
CLN6-208ENST00000567060 H2AFB1P0C5Y9 115 aa12.29□□□□□ -0.44
CLN6-208ENST00000567060 PPT1P50897 306 aa12.29□□□□□ -0.44
CLN6-208ENST00000567060 ZNF124Q15973 351 aa12.29□□□□□ -0.44
CLN6-208ENST00000567060 HAGHQ16775 308 aa12.29□□□□□ -0.44
CLN6-208ENST00000567060 Q6ZWC4 215 aa12.29□□□□□ -0.44
CLN6-208ENST00000567060 OR10J6PQ8NGY7 276 aa12.29□□□□□ -0.44
CLN6-208ENST00000567060 FAM213BQ8TBF2 198 aa12.29□□□□□ -0.44
CLN6-208ENST00000567060 Q9H3A6 140 aa12.29□□□□□ -0.44
CLN6-208ENST00000567060 SERTM2A0A1B0GWG4 89 aa12.28□□□□□ -0.44
CLN6-208ENST00000567060 HBE1P02100 147 aa12.28□□□□□ -0.44
CLN6-208ENST00000567060 AMBPP02760 352 aa12.28□□□□□ -0.44
CLN6-208ENST00000567060 RANP62826 216 aaKnown RBP12.28□□□□□ -0.44
CLN6-208ENST00000567060 ICAM4Q14773 271 aa12.28□□□□□ -0.44
CLN6-208ENST00000567060 SSX7Q7RTT5 188 aa12.28□□□□□ -0.44
CLN6-208ENST00000567060 SPATA25Q9BR10 227 aa12.28□□□□□ -0.44
CLN6-208ENST00000567060 PLA2G2EQ9NZK7 142 aa12.28□□□□□ -0.44
CLN6-208ENST00000567060 TP53TG1Q9Y2A0 90 aa12.28□□□□□ -0.44
CLN6-208ENST00000567060 AGRNO00468 2067 aa12.27□□□□□ -0.45
CLN6-208ENST00000567060 LCE6AA0A183 80 aa12.27□□□□□ -0.45
CLN6-208ENST00000567060 RBAKDNA6NC62 111 aa12.27□□□□□ -0.45
CLN6-208ENST00000567060 SLC25A5P05141 298 aaKnown RBP12.27□□□□□ -0.45
CLN6-208ENST00000567060 SNRPCP09234 159 aaKnown RBP12.27□□□□□ -0.45
CLN6-208ENST00000567060 IGFL4Q6B9Z1 124 aa12.27□□□□□ -0.45
CLN6-208ENST00000567060 SBSPONQ8IVN8 264 aa12.27□□□□□ -0.45
CLN6-208ENST00000567060 CMTM2Q8TAZ6 248 aa12.27□□□□□ -0.45
CLN6-208ENST00000567060 SFT2D1Q8WV19 159 aa12.27□□□□□ -0.45
CLN6-208ENST00000567060 ODF3Q96PU9 254 aa12.27□□□□□ -0.45
CLN6-208ENST00000567060 TM2D3Q9BRN9 247 aa12.27□□□□□ -0.45
CLN6-208ENST00000567060 TCEAL7Q9BRU2 100 aa12.27□□□□□ -0.45
CLN6-208ENST00000567060 ZMAT4Q9H898 229 aa12.27□□□□□ -0.45
CLN6-208ENST00000567060 RPL35AP18077 110 aaKnown RBP12.26□□□□□ -0.45
CLN6-208ENST00000567060 HLA-DMBP28068 263 aa12.26□□□□□ -0.45
CLN6-208ENST00000567060 FHITP49789 147 aa12.26□□□□□ -0.45
CLN6-208ENST00000567060 CNN1P51911 297 aaKnown RBP12.26□□□□□ -0.45
CLN6-208ENST00000567060 GDF5OSQ5U4N7 250 aa12.26□□□□□ -0.45
CLN6-208ENST00000567060 EXOC3-AS1Q8N2X6 119 aa12.26□□□□□ -0.45
CLN6-208ENST00000567060 LINC00477Q96M19 166 aa12.26□□□□□ -0.45
CLN6-208ENST00000567060 PLECQ15149 4684 aaKnown RBP12.26□□□□□ -0.45
CLN6-208ENST00000567060 TRBV7-9A0A0J9YWB2 115 aa12.25□□□□□ -0.45
CLN6-208ENST00000567060 BLOC1S1P78537 153 aa12.25□□□□□ -0.45
CLN6-208ENST00000567060 HIST1H1AQ02539 215 aaPredicted RBP12.25□□□□□ -0.45
CLN6-208ENST00000567060 IQCF2Q8IXL9 164 aa12.25□□□□□ -0.45
CLN6-208ENST00000567060 C5orf17Q8NAS9 161 aa12.25□□□□□ -0.45
CLN6-208ENST00000567060 OR4B1Q8NGF8 309 aa12.25□□□□□ -0.45
CLN6-208ENST00000567060 PGPA6NDG6 321 aa12.24□□□□□ -0.45
CLN6-208ENST00000567060 FBLL1A6NHQ2 334 aaKnown RBP12.24□□□□□ -0.45
CLN6-208ENST00000567060 ZNF705FA8MVS1 300 aaPredicted RBP12.24□□□□□ -0.45
CLN6-208ENST00000567060 NPIPB6E9PJ23 425 aa12.24□□□□□ -0.45
CLN6-208ENST00000567060 F6UB75 175 aa12.24□□□□□ -0.45
CLN6-208ENST00000567060 M0R3E3 92 aa12.24□□□□□ -0.45
CLN6-208ENST00000567060 EIF3GO75821 320 aaKnown RBP eCLIP12.24□□□□□ -0.45
CLN6-208ENST00000567060 TSPOP30536 169 aa12.24□□□□□ -0.45
CLN6-208ENST00000567060 PMS2P11Q13670 270 aa12.24□□□□□ -0.45
CLN6-208ENST00000567060 C9orf47Q6ZRZ4 202 aa12.24□□□□□ -0.45
CLN6-208ENST00000567060 RCHY1Q96PM5 261 aa12.24□□□□□ -0.45
CLN6-208ENST00000567060 PPP1R14DQ9NXH3 145 aa12.24□□□□□ -0.45
CLN6-208ENST00000567060 BOLA2-SMG1P6H3BVE0 249 aa12.23□□□□□ -0.45
CLN6-208ENST00000567060 K7EQM0 130 aa12.23□□□□□ -0.45
CLN6-208ENST00000567060 CA1P00915 261 aaPredicted RBP12.23□□□□□ -0.45
CLN6-208ENST00000567060 FGF8P55075 233 aaPredicted RBP12.23□□□□□ -0.45
CLN6-208ENST00000567060 AMTNQ6UX39 209 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 100.1 ms