RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 MGST2Q99735 147 aa11.68□□□□□ -0.54
CLN3-211ENST00000564091 C20orf144Q9BQM9 153 aa11.68□□□□□ -0.54
CLN3-211ENST00000564091 RCL1Q9Y2P8 373 aaKnown RBP11.68□□□□□ -0.54
CLN3-211ENST00000564091 H3BQ15 152 aa11.67□□□□□ -0.54
CLN3-211ENST00000564091 RLN2P04090 185 aa11.67□□□□□ -0.54
CLN3-211ENST00000564091 CT45A10P0DMU9 189 aa11.67□□□□□ -0.54
CLN3-211ENST00000564091 INPP1P49441 399 aa11.67□□□□□ -0.54
CLN3-211ENST00000564091 TAS2R30P59541 319 aa11.67□□□□□ -0.54
CLN3-211ENST00000564091 KRTAP10-2P60368 255 aa11.67□□□□□ -0.54
CLN3-211ENST00000564091 TTC32Q5I0X7 151 aa11.67□□□□□ -0.54
CLN3-211ENST00000564091 ZNF503Q96F45 646 aa11.67□□□□□ -0.54
CLN3-211ENST00000564091 TRAV5A0A0B4J249 113 aa11.66□□□□□ -0.54
CLN3-211ENST00000564091 TRAV12-3A0A0B4J271 114 aa11.66□□□□□ -0.54
CLN3-211ENST00000564091 C7orf66A4D0T2 115 aa11.66□□□□□ -0.54
CLN3-211ENST00000564091 NAP1L6A6NFF2 107 aa11.66□□□□□ -0.54
CLN3-211ENST00000564091 SNURFLB1AK76 121 aa11.66□□□□□ -0.54
CLN3-211ENST00000564091 MBPP02686 304 aaPredicted RBP11.66□□□□□ -0.54
CLN3-211ENST00000564091 IGLC2P0DOY2 106 aa11.66□□□□□ -0.54
CLN3-211ENST00000564091 SPANXN2Q5MJ10 180 aa11.66□□□□□ -0.54
CLN3-211ENST00000564091 C10orf113Q5VZT2 155 aa11.66□□□□□ -0.54
CLN3-211ENST00000564091 TRIQKQ629K1 86 aa11.66□□□□□ -0.54
CLN3-211ENST00000564091 Q8N1X5 172 aa11.66□□□□□ -0.54
CLN3-211ENST00000564091 SAT2Q96F10 170 aaPredicted RBP11.66□□□□□ -0.54
CLN3-211ENST00000564091 GGACTQ9BVM4 153 aa11.66□□□□□ -0.54
CLN3-211ENST00000564091 Q9H3A6 140 aa11.66□□□□□ -0.54
CLN3-211ENST00000564091 SCRT2Q9NQ03 307 aa11.66□□□□□ -0.54
CLN3-211ENST00000564091 Q6ZTI0 123 aa11.65□□□□□ -0.54
CLN3-211ENST00000564091 ZNF431Q8TF32 576 aaPredicted RBP11.65□□□□□ -0.54
CLN3-211ENST00000564091 UPK3BQ9BT76 320 aa11.65□□□□□ -0.54
CLN3-211ENST00000564091 TMPRSS5Q9H3S3 457 aa11.65□□□□□ -0.54
CLN3-211ENST00000564091 PXMP4Q9Y6I8 212 aa11.65□□□□□ -0.54
CLN3-211ENST00000564091 BTCP35070 178 aa11.64□□□□□ -0.55
CLN3-211ENST00000564091 MITD1Q8WV92 249 aa11.64□□□□□ -0.55
CLN3-211ENST00000564091 DNAJC4Q9NNZ3 241 aa11.64□□□□□ -0.55
CLN3-211ENST00000564091 ZNF586Q9NXT0 402 aa11.64□□□□□ -0.55
CLN3-211ENST00000564091 MRPS16Q9Y3D3 137 aaKnown RBP11.64□□□□□ -0.55
CLN3-211ENST00000564091 CCSO14618 274 aa11.63□□□□□ -0.55
CLN3-211ENST00000564091 LEPP41159 167 aa11.63□□□□□ -0.55
CLN3-211ENST00000564091 CAMLGP49069 296 aa11.63□□□□□ -0.55
CLN3-211ENST00000564091 MIC13Q5XKP0 118 aa11.63□□□□□ -0.55
CLN3-211ENST00000564091 SDHCQ99643 169 aaPredicted RBP11.63□□□□□ -0.55
CLN3-211ENST00000564091 A0A1W2PPQ1 181 aa11.62□□□□□ -0.55
CLN3-211ENST00000564091 NPIPB6E9PJ23 425 aa11.62□□□□□ -0.55
CLN3-211ENST00000564091 H3BNG1 76 aa11.62□□□□□ -0.55
CLN3-211ENST00000564091 L7N2F9 121 aa11.62□□□□□ -0.55
CLN3-211ENST00000564091 BCAP31P51572 246 aa11.62□□□□□ -0.55
CLN3-211ENST00000564091 VAMP2P63027 116 aa11.62□□□□□ -0.55
CLN3-211ENST00000564091 DAZ2Q13117 558 aaKnown RBP11.62□□□□□ -0.55
CLN3-211ENST00000564091 Q6ZRG5 221 aa11.62□□□□□ -0.55
CLN3-211ENST00000564091 NRARPQ7Z6K4 114 aa11.62□□□□□ -0.55
CLN3-211ENST00000564091 VSIG2Q96IQ7 327 aa11.62□□□□□ -0.55
CLN3-211ENST00000564091 ODF3Q96PU9 254 aa11.62□□□□□ -0.55
CLN3-211ENST00000564091 PYGO2Q9BRQ0 406 aa11.62□□□□□ -0.55
CLN3-211ENST00000564091 GSN-AS1Q9NRJ2 163 aa11.62□□□□□ -0.55
CLN3-211ENST00000564091 TRGV2A0A075B6R0 118 aa11.61□□□□□ -0.55
CLN3-211ENST00000564091 CST7O76096 145 aa11.61□□□□□ -0.55
CLN3-211ENST00000564091 BTF3P20290 206 aaKnown RBP11.61□□□□□ -0.55
CLN3-211ENST00000564091 ERCC8Q13216 396 aa11.61□□□□□ -0.55
CLN3-211ENST00000564091 LSM5Q9Y4Y9 91 aaKnown RBP11.61□□□□□ -0.55
CLN3-211ENST00000564091 A0A096LPF7 62 aa11.6□□□□□ -0.55
CLN3-211ENST00000564091 FAM24AA6NFZ4 105 aa11.6□□□□□ -0.55
CLN3-211ENST00000564091 CENPXA8MT69 81 aa11.6□□□□□ -0.55
CLN3-211ENST00000564091 FAM25EA8MYX2 175 aa11.6□□□□□ -0.55
CLN3-211ENST00000564091 M0R3E3 92 aa11.6□□□□□ -0.55
CLN3-211ENST00000564091 CAV2P51636 162 aa11.6□□□□□ -0.55
CLN3-211ENST00000564091 LINC00315P59091 139 aa11.6□□□□□ -0.55
CLN3-211ENST00000564091 RAB31Q13636 194 aa11.6□□□□□ -0.55
CLN3-211ENST00000564091 GUK1Q16774 197 aa11.6□□□□□ -0.55
CLN3-211ENST00000564091 RBM38Q9H0Z9 239 aaKnown RBP11.6□□□□□ -0.55
CLN3-211ENST00000564091 TRGV1A0A0A0MS02 117 aa11.59□□□□□ -0.55
CLN3-211ENST00000564091 C11orf72Q8NBR9 251 aa11.59□□□□□ -0.55
CLN3-211ENST00000564091 OR1L4Q8NGR5 311 aa11.59□□□□□ -0.55
CLN3-211ENST00000564091 WDR83OSQ9Y284 106 aa11.59□□□□□ -0.55
CLN3-211ENST00000564091 C7orf71A4D174 169 aa11.58□□□□□ -0.56
CLN3-211ENST00000564091 SLC25A5P05141 298 aaKnown RBP11.58□□□□□ -0.56
CLN3-211ENST00000564091 FUSP35637 526 aaKnown RBP eCLIP11.58□□□□□ -0.56
CLN3-211ENST00000564091 CD300CQ08708 224 aa11.58□□□□□ -0.56
CLN3-211ENST00000564091 BTN1A1Q13410 526 aa11.58□□□□□ -0.56
CLN3-211ENST00000564091 ZNF846Q147U1 533 aa11.58□□□□□ -0.56
CLN3-211ENST00000564091 SLC39A9Q9NUM3 307 aa11.58□□□□□ -0.56
CLN3-211ENST00000564091 UQCC1Q9NVA1 299 aa11.58□□□□□ -0.56
CLN3-211ENST00000564091 KLF12Q9Y4X4 402 aa11.58□□□□□ -0.56
CLN3-211ENST00000564091 TRBV19A0A075B6N1 114 aa11.57□□□□□ -0.56
CLN3-211ENST00000564091 ZNF324O75467 553 aaPredicted RBP11.57□□□□□ -0.56
CLN3-211ENST00000564091 IL7P13232 177 aa11.57□□□□□ -0.56
CLN3-211ENST00000564091 RNASE4P34096 147 aaKnown RBP11.57□□□□□ -0.56
CLN3-211ENST00000564091 Q6ZRN7 208 aaPredicted RBP11.57□□□□□ -0.56
CLN3-211ENST00000564091 ZNF680Q8NEM1 530 aa11.57□□□□□ -0.56
CLN3-211ENST00000564091 PFDN5Q99471 154 aa11.57□□□□□ -0.56
CLN3-211ENST00000564091 AGPAT4-IT1Q9H0P7 198 aa11.57□□□□□ -0.56
CLN3-211ENST00000564091 C20orf85Q9H1P6 137 aa11.57□□□□□ -0.56
CLN3-211ENST00000564091 C11orf1Q9H5F2 150 aa11.57□□□□□ -0.56
CLN3-211ENST00000564091 FUT9Q9Y231 359 aa11.57□□□□□ -0.56
CLN3-211ENST00000564091 UBE2L5PA0A1B0GUS4 154 aa11.56□□□□□ -0.56
CLN3-211ENST00000564091 KLLNB2CW77 178 aa11.56□□□□□ -0.56
CLN3-211ENST00000564091 ZNF253O75346 499 aa11.56□□□□□ -0.56
CLN3-211ENST00000564091 NDUFB4O95168 129 aa11.56□□□□□ -0.56
CLN3-211ENST00000564091 IGHV3-53P01767 116 aa11.56□□□□□ -0.56
CLN3-211ENST00000564091 RPL29P47914 159 aaKnown RBP11.56□□□□□ -0.56
CLN3-211ENST00000564091 BAXQ07812 192 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms