RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 RNF223E7ERA6 249 aa11.94□□□□□ -0.5
CUX1-214ENST00000550008 TOMM40O96008 361 aa11.94□□□□□ -0.5
CUX1-214ENST00000550008 Q86TA4 180 aa11.94□□□□□ -0.5
CUX1-214ENST00000550008 FOXC2Q99958 501 aa11.94□□□□□ -0.5
CUX1-214ENST00000550008 C11orf1Q9H5F2 150 aa11.94□□□□□ -0.5
CUX1-214ENST00000550008 DSCAMO60469 2012 aa11.94□□□□□ -0.5
CUX1-214ENST00000550008 OVOL3O00110 214 aa11.94□□□□□ -0.5
CUX1-214ENST00000550008 OR4X2Q8NGF9 303 aa11.94□□□□□ -0.5
CUX1-214ENST00000550008 ZNF256Q9Y2P7 627 aaPredicted RBP11.94□□□□□ -0.5
CUX1-214ENST00000550008 K7EN84 100 aa11.93□□□□□ -0.5
CUX1-214ENST00000550008 EREGO14944 169 aa11.93□□□□□ -0.5
CUX1-214ENST00000550008 SH2D1AO60880 128 aa11.93□□□□□ -0.5
CUX1-214ENST00000550008 UBE2E1P51965 193 aa11.93□□□□□ -0.5
CUX1-214ENST00000550008 PSMG4Q5JS54 123 aa11.93□□□□□ -0.5
CUX1-214ENST00000550008 CDPF1Q6NVV7 123 aa11.93□□□□□ -0.5
CUX1-214ENST00000550008 NRGNQ92686 78 aa11.93□□□□□ -0.5
CUX1-214ENST00000550008 IGHV2-5P01817 119 aa11.93□□□□□ -0.5
CUX1-214ENST00000550008 Q6AWC8 147 aa11.93□□□□□ -0.5
CUX1-214ENST00000550008 AMN1Q8IY45 258 aa11.93□□□□□ -0.5
CUX1-214ENST00000550008 ZNF664Q8N3J9 261 aa11.93□□□□□ -0.5
CUX1-214ENST00000550008 FASNP49327 2511 aaKnown RBP11.93□□□□□ -0.5
CUX1-214ENST00000550008 PSG3Q16557 428 aa11.93□□□□□ -0.5
CUX1-214ENST00000550008 OR1N2Q8NGR9 330 aa11.93□□□□□ -0.5
CUX1-214ENST00000550008 A0A1B0GV72 72 aa11.93□□□□□ -0.5
CUX1-214ENST00000550008 C3orf79P0CE67 100 aa11.93□□□□□ -0.5
CUX1-214ENST00000550008 C8orf49Q96NF6 230 aa11.93□□□□□ -0.5
CUX1-214ENST00000550008 LY96Q9Y6Y9 160 aa11.93□□□□□ -0.5
CUX1-214ENST00000550008 V9GYV3 84 aa11.93□□□□□ -0.5
CUX1-214ENST00000550008 YAE1D1Q9NRH1 226 aa11.92□□□□□ -0.5
CUX1-214ENST00000550008 KMT2EQ8IZD2 1858 aa11.92□□□□□ -0.5
CUX1-214ENST00000550008 IGHV2-70DA0A0C4DH43 119 aa11.92□□□□□ -0.5
CUX1-214ENST00000550008 FXYD5Q96DB9 178 aa11.92□□□□□ -0.5
CUX1-214ENST00000550008 FCN3O75636 299 aa11.92□□□□□ -0.5
CUX1-214ENST00000550008 HLA-DMBP28068 263 aa11.92□□□□□ -0.5
CUX1-214ENST00000550008 LEPP41159 167 aa11.92□□□□□ -0.5
CUX1-214ENST00000550008 CACNG7P62955 275 aa11.92□□□□□ -0.5
CUX1-214ENST00000550008 VWC2Q2TAL6 325 aa11.92□□□□□ -0.5
CUX1-214ENST00000550008 PRSS22Q9GZN4 317 aa11.92□□□□□ -0.5
CUX1-214ENST00000550008 SYT8Q8NBV8 401 aa11.91□□□□□ -0.5
CUX1-214ENST00000550008 TMEM213A2RRL7 107 aa11.91□□□□□ -0.5
CUX1-214ENST00000550008 SLAQ13239 276 aa11.91□□□□□ -0.5
CUX1-214ENST00000550008 F2Z2F3 143 aa11.91□□□□□ -0.5
CUX1-214ENST00000550008 FABP2P12104 132 aa11.91□□□□□ -0.5
CUX1-214ENST00000550008 HERVK_113P61574 105 aa11.91□□□□□ -0.5
CUX1-214ENST00000550008 OR10J3Q5JRS4 329 aa11.91□□□□□ -0.5
CUX1-214ENST00000550008 TRBV19A0A075B6N1 114 aa11.9□□□□□ -0.5
CUX1-214ENST00000550008 H7C2G1 150 aa11.9□□□□□ -0.5
CUX1-214ENST00000550008 MSMBP08118 114 aa11.9□□□□□ -0.5
CUX1-214ENST00000550008 JKAMPQ9P055 326 aa11.9□□□□□ -0.5
CUX1-214ENST00000550008 TSPOP30536 169 aa11.9□□□□□ -0.5
CUX1-214ENST00000550008 RAX2Q96IS3 184 aa11.9□□□□□ -0.5
CUX1-214ENST00000550008 KIR2DL4Q99706 377 aa11.9□□□□□ -0.5
CUX1-214ENST00000550008 BEX4Q9NWD9 120 aaPredicted RBP11.9□□□□□ -0.5
CUX1-214ENST00000550008 VPS13AQ96RL7 3174 aa11.9□□□□□ -0.51
CUX1-214ENST00000550008 IGKV3OR2-268A0A0C4DH90 116 aa11.9□□□□□ -0.51
CUX1-214ENST00000550008 PATE2Q6UY27 113 aa11.89□□□□□ -0.51
CUX1-214ENST00000550008 TMEM75Q8N9X5 138 aa11.89□□□□□ -0.51
CUX1-214ENST00000550008 RHPN1-AS1Q9BWJ2 59 aa11.89□□□□□ -0.51
CUX1-214ENST00000550008 ATP5L2Q7Z4Y8 100 aa11.89□□□□□ -0.51
CUX1-214ENST00000550008 IGHV1-69DA0A0B4J2H0 117 aa11.88□□□□□ -0.51
CUX1-214ENST00000550008 hDV102S1A0JD36 115 aa11.88□□□□□ -0.51
CUX1-214ENST00000550008 IGHV1-69P01742 117 aa11.88□□□□□ -0.51
CUX1-214ENST00000550008 PEF1Q9UBV8 284 aaKnown RBP11.88□□□□□ -0.51
CUX1-214ENST00000550008 FN1P02751 2386 aaKnown RBP11.88□□□□□ -0.51
CUX1-214ENST00000550008 NDUFA3O95167 84 aa11.88□□□□□ -0.51
CUX1-214ENST00000550008 RIPPLY3P57055 190 aa11.88□□□□□ -0.51
CUX1-214ENST00000550008 DNLZQ5SXM8 178 aa11.88□□□□□ -0.51
CUX1-214ENST00000550008 ZNF491Q8N8L2 437 aa11.88□□□□□ -0.51
CUX1-214ENST00000550008 SCGB3A1Q96QR1 104 aa11.88□□□□□ -0.51
CUX1-214ENST00000550008 KLF2Q9Y5W3 355 aaPredicted RBP11.88□□□□□ -0.51
CUX1-214ENST00000550008 A8MWP6 167 aa11.88□□□□□ -0.51
CUX1-214ENST00000550008 PRSS2P07478 247 aa11.88□□□□□ -0.51
CUX1-214ENST00000550008 SP5Q6BEB4 398 aaPredicted RBP11.88□□□□□ -0.51
CUX1-214ENST00000550008 DUX3Q96PT4 197 aa11.88□□□□□ -0.51
CUX1-214ENST00000550008 PSMB11A5LHX3 300 aa11.88□□□□□ -0.51
CUX1-214ENST00000550008 CGB3P0DN86 165 aa11.88□□□□□ -0.51
CUX1-214ENST00000550008 CGB7P0DN87 165 aa11.88□□□□□ -0.51
CUX1-214ENST00000550008 TMEM170BQ5T4T1 132 aa11.88□□□□□ -0.51
CUX1-214ENST00000550008 HIST1H4GQ99525 98 aa11.88□□□□□ -0.51
CUX1-214ENST00000550008 FRMD6-AS1P0C7T7 363 aa11.87□□□□□ -0.51
CUX1-214ENST00000550008 C1orf194Q5T5A4 169 aa11.87□□□□□ -0.51
CUX1-214ENST00000550008 C11orf52Q96A22 123 aa11.87□□□□□ -0.51
CUX1-214ENST00000550008 TRAV21A0A0B4J279 112 aa11.87□□□□□ -0.51
CUX1-214ENST00000550008 FAM181BA6NEQ2 426 aa11.87□□□□□ -0.51
CUX1-214ENST00000550008 IGKV1-17P01599 117 aa11.87□□□□□ -0.51
CUX1-214ENST00000550008 PSMB2P49721 201 aa11.87□□□□□ -0.51
CUX1-214ENST00000550008 TMEM249Q2WGJ8 235 aa11.87□□□□□ -0.51
CUX1-214ENST00000550008 C18orf32Q8TCD1 76 aa11.87□□□□□ -0.51
CUX1-214ENST00000550008 TRAV9-2A0A087WT02 112 aa11.87□□□□□ -0.51
CUX1-214ENST00000550008 TRAV12-3A0A0B4J271 114 aa11.87□□□□□ -0.51
CUX1-214ENST00000550008 IGHV4-61A0A0C4DH41 118 aa11.87□□□□□ -0.51
CUX1-214ENST00000550008 P0C879 139 aa11.87□□□□□ -0.51
CUX1-214ENST00000550008 EMP1P54849 157 aa11.87□□□□□ -0.51
CUX1-214ENST00000550008 SYNJ2BPP57105 145 aa11.87□□□□□ -0.51
CUX1-214ENST00000550008 A0A1B0GW15 77 aa11.86□□□□□ -0.51
CUX1-214ENST00000550008 NDUFS8O00217 210 aa11.86□□□□□ -0.51
CUX1-214ENST00000550008 HBDP02042 147 aa11.86□□□□□ -0.51
CUX1-214ENST00000550008 SNHG12Q9BXW3 62 aa11.86□□□□□ -0.51
CUX1-214ENST00000550008 TRBV7-1A0A0A6YYK4 115 aa11.86□□□□□ -0.51
CUX1-214ENST00000550008 ZFP36P26651 326 aaKnown RBP11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 96.3 ms