RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-210	ENST00000541488	PMAIP1	Q13794	54 aa		0.7	□□□□□ -2.3
PRKDC-210	ENST00000541488	CDKL4	Q5MAI5	379 aa		0.7	□□□□□ -2.3
PRKDC-210	ENST00000541488	CCDC122	Q5T0U0	273 aa		0.7	□□□□□ -2.3
PRKDC-210	ENST00000541488	SYPL2	Q5VXT5	272 aa		0.7	□□□□□ -2.3
PRKDC-210	ENST00000541488	RPL22L1	Q6P5R6	122 aa	Known RBP	0.7	□□□□□ -2.3
PRKDC-210	ENST00000541488	LRRC25	Q8N386	305 aa	Predicted RBP	0.7	□□□□□ -2.3
PRKDC-210	ENST00000541488	C9orf163	Q8N9P6	203 aa		0.7	□□□□□ -2.3
PRKDC-210	ENST00000541488	MCFD2	Q8NI22	146 aa		0.7	□□□□□ -2.3
PRKDC-210	ENST00000541488	MRPL30	Q8TCC3	161 aa	Known RBP	0.7	□□□□□ -2.3
PRKDC-210	ENST00000541488	DDI1	Q8WTU0	396 aa		0.7	□□□□□ -2.3
PRKDC-210	ENST00000541488	RASSF5	Q8WWW0	418 aa		0.7	□□□□□ -2.3
PRKDC-210	ENST00000541488	SLC35B4	Q969S0	331 aa		0.7	□□□□□ -2.3
PRKDC-210	ENST00000541488	ADAT1	Q9BUB4	502 aa	Known RBP	0.7	□□□□□ -2.3
PRKDC-210	ENST00000541488	YIPF3	Q9GZM5	350 aa		0.7	□□□□□ -2.3
PRKDC-210	ENST00000541488	BAIAP2	Q9UQB8	552 aa		0.7	□□□□□ -2.3
PRKDC-210	ENST00000541488	CAD	P27708	2225 aa		0.7	□□□□□ -2.3
PRKDC-210	ENST00000541488	FREM1	Q5H8C1	2179 aa		0.7	□□□□□ -2.3
PRKDC-210	ENST00000541488	INTS1	Q8N201	2190 aa	Known RBP	0.7	□□□□□ -2.3
PRKDC-210	ENST00000541488	EXPH5	Q8NEV8	1989 aa		0.7	□□□□□ -2.3
PRKDC-210	ENST00000541488	APOB	P04114	4563 aa	Known RBP	0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488	PKD1	P98161	4303 aa		0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488	SCN3A	Q9NY46	2000 aa		0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488		A0A0J9YY10	115 aa		0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488		A0A1B0GX78	115 aa		0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488	FUOM	A2VDF0	154 aa		0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488	INMT-MINDY4	F8WBC2	141 aa		0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488	IFNA5	P01569	189 aa		0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488	PMP2	P02689	132 aa		0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488	HIST1H1E	P10412	219 aa	Known RBP	0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488	CD79A	P11912	226 aa		0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488	RPS4Y1	P22090	263 aa	Known RBP	0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488	HIST1H2BO	P23527	126 aa		0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488	HIST1H2BB	P33778	126 aa		0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488	SULT1A1	P50225	295 aa		0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488	NKX2-5	P52952	324 aa	Predicted RBP	0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488	HIST1H2BD	P58876	126 aa		0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488	PSME3	P61289	254 aa		0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488	HIST1H2BC	P62807	126 aa		0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488	OR2F1	Q13607	317 aa		0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488	ZNF345	Q14585	488 aa		0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488	GUK1	Q16774	197 aa		0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488	HIST2H2BE	Q16778	126 aa		0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488	HIST2H2BF	Q5QNW6	126 aa	Predicted RBP	0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488	PTRHD1	Q6GMV3	140 aa	Known RBP	0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488	C12orf29	Q8N999	325 aa		0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488	ST6GALNAC3	Q8NDV1	305 aa		0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488	HIST1H2BH	Q93079	126 aa		0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488	TCEAL4	Q96EI5	215 aa		0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488	IMP4	Q96G21	291 aa	Known RBP	0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488	ARL5B	Q96KC2	179 aa		0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488	HIST1H2BN	Q99877	126 aa		0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488	HIST1H2BM	Q99879	126 aa		0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488	WDR61	Q9GZS3	305 aa	Known RBP	0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488	PRTFDC1	Q9NRG1	225 aa		0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488	MED29	Q9NX70	200 aa		0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488	GUCA1B	Q9UMX6	200 aa		0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488	NOSIP	Q9Y314	301 aa	Known RBP	0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488	MYO18A	Q92614	2054 aa	Known RBP	0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488	DNAH2	Q9P225	4427 aa		0.69	□□□□□ -2.3
PRKDC-210	ENST00000541488	LRP1	Q07954	4544 aa	Known RBP	0.68	□□□□□ -2.3
PRKDC-210	ENST00000541488	KIAA1549	Q9HCM3	1950 aa		0.68	□□□□□ -2.3
PRKDC-210	ENST00000541488	DST	Q03001	7570 aa	Known RBP	0.68	□□□□□ -2.3
PRKDC-210	ENST00000541488	DNAH3	Q8TD57	4116 aa		0.68	□□□□□ -2.3
PRKDC-210	ENST00000541488	EEF1E1-BLOC1S5	C9J1V9	151 aa		0.68	□□□□□ -2.3
PRKDC-210	ENST00000541488	PSMD12	O00232	456 aa	Predicted RBP	0.68	□□□□□ -2.3
PRKDC-210	ENST00000541488	SPCS3	P61009	180 aa		0.68	□□□□□ -2.3
PRKDC-210	ENST00000541488	CDK5R1	Q15078	307 aa		0.68	□□□□□ -2.3
PRKDC-210	ENST00000541488	SPANXN3	Q5MJ09	141 aa		0.68	□□□□□ -2.3
PRKDC-210	ENST00000541488	C6orf52	Q5T4I8	152 aa		0.68	□□□□□ -2.3
PRKDC-210	ENST00000541488	HIST2H3PS2	Q5TEC6	136 aa		0.68	□□□□□ -2.3
PRKDC-210	ENST00000541488	LPCAT3	Q6P1A2	487 aa		0.68	□□□□□ -2.3
PRKDC-210	ENST00000541488	ALKAL1	Q6UXT8	129 aa		0.68	□□□□□ -2.3
PRKDC-210	ENST00000541488	AAED1	Q7RTV5	226 aa		0.68	□□□□□ -2.3
PRKDC-210	ENST00000541488	IQCF2	Q8IXL9	164 aa		0.68	□□□□□ -2.3
PRKDC-210	ENST00000541488	C20orf196	Q8IYI0	205 aa		0.68	□□□□□ -2.3
PRKDC-210	ENST00000541488		Q8N2B8	174 aa		0.68	□□□□□ -2.3
PRKDC-210	ENST00000541488	OR13C4	Q8NGS5	318 aa		0.68	□□□□□ -2.3
PRKDC-210	ENST00000541488	TMEM106A	Q96A25	262 aa		0.68	□□□□□ -2.3
PRKDC-210	ENST00000541488	COMMD5	Q9GZQ3	224 aa		0.68	□□□□□ -2.3
PRKDC-210	ENST00000541488		Q9Y3F1	56 aa		0.68	□□□□□ -2.3
PRKDC-210	ENST00000541488	FAT3	Q8TDW7	4589 aa		0.68	□□□□□ -2.3
PRKDC-210	ENST00000541488	DNAH6	Q9C0G6	4158 aa		0.67	□□□□□ -2.3
PRKDC-210	ENST00000541488	DNAH11	Q96DT5	4516 aa		0.67	□□□□□ -2.3
PRKDC-210	ENST00000541488	MED12L	Q86YW9	2145 aa		0.67	□□□□□ -2.3
PRKDC-210	ENST00000541488	RBM14-RBM4	A0A0A0MSL8	147 aa	Known RBP	0.67	□□□□□ -2.3
PRKDC-210	ENST00000541488	IFNA10	P01566	189 aa		0.67	□□□□□ -2.3
PRKDC-210	ENST00000541488	TNNC2	P02585	160 aa		0.67	□□□□□ -2.3
PRKDC-210	ENST00000541488	CLPS	P04118	112 aa		0.67	□□□□□ -2.3
PRKDC-210	ENST00000541488	SHBG	P04278	402 aa		0.67	□□□□□ -2.3
PRKDC-210	ENST00000541488	IFNA16	P05015	189 aa		0.67	□□□□□ -2.3
PRKDC-210	ENST00000541488	SMIM10L2A	P0DMW4	78 aa		0.67	□□□□□ -2.3
PRKDC-210	ENST00000541488	SMIM10L2B	P0DMW5	78 aa		0.67	□□□□□ -2.3
PRKDC-210	ENST00000541488	HIST1H1T	P22492	207 aa	Predicted RBP	0.67	□□□□□ -2.3
PRKDC-210	ENST00000541488	EIF2B2	P49770	351 aa	Known RBP	0.67	□□□□□ -2.3
PRKDC-210	ENST00000541488	SUPT4H1	P63272	117 aa	Known RBP	0.67	□□□□□ -2.3
PRKDC-210	ENST00000541488	IMPG1	Q17R60	797 aa		0.67	□□□□□ -2.3
PRKDC-210	ENST00000541488	C10orf55	Q5SWW7	151 aa		0.67	□□□□□ -2.3
PRKDC-210	ENST00000541488	AADACL3	Q5VUY0	350 aa		0.67	□□□□□ -2.3
PRKDC-210	ENST00000541488	ZNF826P	Q6ZT77	177 aa		0.67	□□□□□ -2.3
PRKDC-210	ENST00000541488	TMEM86B	Q8N661	226 aa		0.67	□□□□□ -2.3

Retrieved 100 of 20,778 RNA–protein pairs in 90 ms