RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 NCBP2LA6PVI3 153 aaKnown RBP4.24□□□□□ -1.73
CD44-236ENST00000533222 KNCNA6PVL3 124 aa4.24□□□□□ -1.73
CD44-236ENST00000533222 INAFM1C9JVW0 142 aa4.24□□□□□ -1.73
CD44-236ENST00000533222 PRSS46E5RG02 174 aa4.24□□□□□ -1.73
CD44-236ENST00000533222 SCRG1O75711 98 aa4.24□□□□□ -1.73
CD44-236ENST00000533222 TCL1BO95988 128 aa4.24□□□□□ -1.73
CD44-236ENST00000533222 P01737 135 aa4.24□□□□□ -1.73
CD44-236ENST00000533222 HBDP02042 147 aa4.24□□□□□ -1.73
CD44-236ENST00000533222 ZNF136P52737 540 aa4.24□□□□□ -1.73
CD44-236ENST00000533222 RPL18Q07020 188 aaKnown RBP4.24□□□□□ -1.73
CD44-236ENST00000533222 FAM27E3Q08E93 113 aa4.24□□□□□ -1.73
CD44-236ENST00000533222 IGFL2Q6UWQ7 119 aa4.24□□□□□ -1.73
CD44-236ENST00000533222 CNRIP1Q96F85 164 aaPredicted RBP4.24□□□□□ -1.73
CD44-236ENST00000533222 EMC6Q9BV81 110 aa4.24□□□□□ -1.73
CD44-236ENST00000533222 OTORQ9NRC9 128 aa4.24□□□□□ -1.73
CD44-236ENST00000533222 EPDR1Q9UM22 224 aa4.24□□□□□ -1.73
CD44-236ENST00000533222 TRIP12Q14669 1992 aaPredicted RBP4.23□□□□□ -1.73
CD44-236ENST00000533222 PLXNB3Q9ULL4 1909 aa4.23□□□□□ -1.73
CD44-236ENST00000533222 TRAV8-1A0A0A6YYK1 113 aa4.23□□□□□ -1.73
CD44-236ENST00000533222 A0A0J9YW62 118 aa4.23□□□□□ -1.73
CD44-236ENST00000533222 TRBV10-2A0A0K0K1G8 114 aa4.23□□□□□ -1.73
CD44-236ENST00000533222 K7EQS6 105 aa4.23□□□□□ -1.73
CD44-236ENST00000533222 CDX4O14627 284 aaPredicted RBP4.23□□□□□ -1.73
CD44-236ENST00000533222 MRPS12O15235 138 aaKnown RBP4.23□□□□□ -1.73
CD44-236ENST00000533222 CCL16O15467 120 aa4.23□□□□□ -1.73
CD44-236ENST00000533222 LYPD3O95274 346 aa4.23□□□□□ -1.73
CD44-236ENST00000533222 FBXW4P57775 412 aa4.23□□□□□ -1.73
CD44-236ENST00000533222 HBBP68871 147 aa4.23□□□□□ -1.73
CD44-236ENST00000533222 FAM104BQ5XKR9 115 aa4.23□□□□□ -1.73
CD44-236ENST00000533222 SLC48A1Q6P1K1 146 aa4.23□□□□□ -1.73
CD44-236ENST00000533222 SRSF12Q8WXF0 261 aaKnown RBP4.23□□□□□ -1.73
CD44-236ENST00000533222 LINC00527Q9UJ94 153 aa4.23□□□□□ -1.73
CD44-236ENST00000533222 RPUSD1Q9UJJ7 312 aaKnown RBP4.23□□□□□ -1.73
CD44-236ENST00000533222 MED19A0JLT2 244 aaPredicted RBP4.22□□□□□ -1.73
CD44-236ENST00000533222 PGPA6NDG6 321 aa4.22□□□□□ -1.73
CD44-236ENST00000533222 H3BMM0 161 aa4.22□□□□□ -1.73
CD44-236ENST00000533222 SYNGR2O43760 224 aa4.22□□□□□ -1.73
CD44-236ENST00000533222 WISP2O76076 250 aa4.22□□□□□ -1.73
CD44-236ENST00000533222 IGLV3-25P01717 112 aa4.22□□□□□ -1.73
CD44-236ENST00000533222 GNLYP22749 145 aa4.22□□□□□ -1.73
CD44-236ENST00000533222 TWIST1Q15672 202 aa4.22□□□□□ -1.73
CD44-236ENST00000533222 MLF2Q15773 248 aaPredicted RBP4.22□□□□□ -1.73
CD44-236ENST00000533222 CST6Q15828 149 aa4.22□□□□□ -1.73
CD44-236ENST00000533222 WDR38Q5JTN6 314 aa4.22□□□□□ -1.73
CD44-236ENST00000533222 UBE2WQ96B02 151 aa4.22□□□□□ -1.73
CD44-236ENST00000533222 ZNF414Q96IQ9 312 aa4.22□□□□□ -1.73
CD44-236ENST00000533222 NXT2Q9NPJ8 142 aaKnown RBP4.22□□□□□ -1.73
CD44-236ENST00000533222 TMEM167BQ9NRX6 74 aa4.22□□□□□ -1.73
CD44-236ENST00000533222 AMMECR1Q9Y4X0 333 aaPredicted RBP4.22□□□□□ -1.73
CD44-236ENST00000533222 SLC25A15Q9Y619 301 aa4.22□□□□□ -1.73
CD44-236ENST00000533222 RAI1Q7Z5J4 1906 aaPredicted RBP4.22□□□□□ -1.73
CD44-236ENST00000533222 SCN3AQ9NY46 2000 aa4.22□□□□□ -1.73
CD44-236ENST00000533222 NDUFB3O43676 98 aa4.21□□□□□ -1.74
CD44-236ENST00000533222 NDUFS5O43920 106 aa4.21□□□□□ -1.74
CD44-236ENST00000533222 SRSF10O75494 262 aaKnown RBP4.21□□□□□ -1.74
CD44-236ENST00000533222 IGKV1D-33P01593 117 aa4.21□□□□□ -1.74
CD44-236ENST00000533222 IGKV1-33P01594 117 aa4.21□□□□□ -1.74
CD44-236ENST00000533222 SLC25A16P16260 332 aa4.21□□□□□ -1.74
CD44-236ENST00000533222 EFNA4P52798 201 aa4.21□□□□□ -1.74
CD44-236ENST00000533222 SUB1P53999 127 aaKnown RBP eCLIP4.21□□□□□ -1.74
CD44-236ENST00000533222 FKBP1AP62942 108 aaKnown RBP4.21□□□□□ -1.74
CD44-236ENST00000533222 FHL1Q13642 323 aa4.21□□□□□ -1.74
CD44-236ENST00000533222 ATXN8Q156A1 80 aa4.21□□□□□ -1.74
CD44-236ENST00000533222 PRR26Q8N8Z3 221 aa4.21□□□□□ -1.74
CD44-236ENST00000533222 DAND5Q8N907 189 aa4.21□□□□□ -1.74
CD44-236ENST00000533222 VSIG2Q96IQ7 327 aa4.21□□□□□ -1.74
CD44-236ENST00000533222 C1orf147Q96MC9 270 aaPredicted RBP4.21□□□□□ -1.74
CD44-236ENST00000533222 DEFB127Q9H1M4 99 aa4.21□□□□□ -1.74
CD44-236ENST00000533222 LINC00597Q9H2U6 94 aa4.21□□□□□ -1.74
CD44-236ENST00000533222 TAS2R4Q9NYW5 299 aa4.21□□□□□ -1.74
CD44-236ENST00000533222 F11RQ9Y624 299 aaKnown RBP4.21□□□□□ -1.74
CD44-236ENST00000533222 R4GMQ9 66 aa4.21□□□□□ -1.74
CD44-236ENST00000533222 TDRD6O60522 2096 aaKnown RBP4.21□□□□□ -1.74
CD44-236ENST00000533222 KIAA1549LQ6ZVL6 1849 aa4.21□□□□□ -1.74
CD44-236ENST00000533222 hADV29S1A0JD25 119 aa4.2□□□□□ -1.74
CD44-236ENST00000533222 CPSF4LA6NMK7 179 aaKnown RBP4.2□□□□□ -1.74
CD44-236ENST00000533222 FAM72CH0Y354 149 aa4.2□□□□□ -1.74
CD44-236ENST00000533222 SPRY3O43610 288 aa4.2□□□□□ -1.74
CD44-236ENST00000533222 SS18L1O75177 396 aaPredicted RBP4.2□□□□□ -1.74
CD44-236ENST00000533222 APOHP02749 345 aaPredicted RBP4.2□□□□□ -1.74
CD44-236ENST00000533222 MAGEA5P43359 124 aa4.2□□□□□ -1.74
CD44-236ENST00000533222 MFAP2P55001 183 aa4.2□□□□□ -1.74
CD44-236ENST00000533222 DAZ2Q13117 558 aaKnown RBP4.2□□□□□ -1.74
CD44-236ENST00000533222 TMEM52BQ4KMG9 183 aa4.2□□□□□ -1.74
CD44-236ENST00000533222 FAM72AQ5TYM5 149 aa4.2□□□□□ -1.74
CD44-236ENST00000533222 FAM72DQ6L9T8 149 aa4.2□□□□□ -1.74
CD44-236ENST00000533222 SCGB1D4Q6XE38 83 aa4.2□□□□□ -1.74
CD44-236ENST00000533222 ZNF497Q6ZNH5 498 aa4.2□□□□□ -1.74
CD44-236ENST00000533222 LINC00305Q7Z4B0 112 aa4.2□□□□□ -1.74
CD44-236ENST00000533222 DAZ4Q86SG3 579 aaKnown RBP4.2□□□□□ -1.74
CD44-236ENST00000533222 FAM72BQ86X60 149 aa4.2□□□□□ -1.74
CD44-236ENST00000533222 LINC01561Q8N1V8 128 aa4.2□□□□□ -1.74
CD44-236ENST00000533222 Q8N9P0 234 aaPredicted RBP4.2□□□□□ -1.74
CD44-236ENST00000533222 LY6G5BQ8NDX9 201 aa4.2□□□□□ -1.74
CD44-236ENST00000533222 NT5CQ8TCD5 201 aa4.2□□□□□ -1.74
CD44-236ENST00000533222 IGF2BP2-AS1Q96M15 143 aa4.2□□□□□ -1.74
CD44-236ENST00000533222 WFDC6Q9BQY6 131 aa4.2□□□□□ -1.74
CD44-236ENST00000533222 TM2D3Q9BRN9 247 aa4.2□□□□□ -1.74
CD44-236ENST00000533222 DAZ3Q9NR90 486 aaKnown RBP4.2□□□□□ -1.74
CD44-236ENST00000533222 ZNF492Q9P255 531 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 96.5 ms