RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	MRPL55	Q7Z7F7	128 aa	Known RBP	4.29	□□□□□ -1.72
CD44-231	ENST00000531110	HMGN2P46	Q86SG4	172 aa		4.29	□□□□□ -1.72
CD44-231	ENST00000531110	SLC22A24	Q8N4F4	322 aa		4.29	□□□□□ -1.72
CD44-231	ENST00000531110	RPRML	Q8N4K4	120 aa		4.29	□□□□□ -1.72
CD44-231	ENST00000531110	RFESD	Q8TAC1	157 aa		4.29	□□□□□ -1.72
CD44-231	ENST00000531110	TAF15	Q92804	592 aa	Known RBP eCLIP	4.29	□□□□□ -1.72
CD44-231	ENST00000531110	LITAF	Q99732	161 aa		4.29	□□□□□ -1.72
CD44-231	ENST00000531110	FOXC2	Q99958	501 aa		4.29	□□□□□ -1.72
CD44-231	ENST00000531110	ZNF256	Q9Y2P7	627 aa	Predicted RBP	4.29	□□□□□ -1.72
CD44-231	ENST00000531110	EXPH5	Q8NEV8	1989 aa		4.29	□□□□□ -1.72
CD44-231	ENST00000531110	HCFC1	P51610	2035 aa		4.28	□□□□□ -1.72
CD44-231	ENST00000531110	TRAV8-2	A0A0B4J237	113 aa		4.28	□□□□□ -1.72
CD44-231	ENST00000531110	IGHV4-61	A0A0C4DH41	118 aa		4.28	□□□□□ -1.72
CD44-231	ENST00000531110		A0A1B0GXF2	115 aa		4.28	□□□□□ -1.72
CD44-231	ENST00000531110		H3BT86	120 aa		4.28	□□□□□ -1.72
CD44-231	ENST00000531110		K7EM74	188 aa		4.28	□□□□□ -1.72
CD44-231	ENST00000531110	IGHV4-59	P01825	116 aa		4.28	□□□□□ -1.72
CD44-231	ENST00000531110	NPPC	P23582	126 aa		4.28	□□□□□ -1.72
CD44-231	ENST00000531110	FKBP2	P26885	142 aa	Known RBP	4.28	□□□□□ -1.72
CD44-231	ENST00000531110	SSR2	P43308	183 aa		4.28	□□□□□ -1.72
CD44-231	ENST00000531110	FXYD2	P54710	66 aa		4.28	□□□□□ -1.72
CD44-231	ENST00000531110	UBE2L3	P68036	154 aa	Known RBP	4.28	□□□□□ -1.72
CD44-231	ENST00000531110	RPL18A	Q02543	176 aa	Known RBP	4.28	□□□□□ -1.72
CD44-231	ENST00000531110	ARFRP1	Q13795	201 aa		4.28	□□□□□ -1.72
CD44-231	ENST00000531110	C1orf140	Q5VVS0	124 aa		4.28	□□□□□ -1.72
CD44-231	ENST00000531110	RPP25L	Q8N5L8	163 aa	Known RBP	4.28	□□□□□ -1.72
CD44-231	ENST00000531110	SERP2	Q8N6R1	65 aa		4.28	□□□□□ -1.72
CD44-231	ENST00000531110	ZNF525	Q8N782	197 aa		4.28	□□□□□ -1.72
CD44-231	ENST00000531110	FMC1	Q96HJ9	113 aa		4.28	□□□□□ -1.72
CD44-231	ENST00000531110	GFRA4	Q9GZZ7	299 aa		4.28	□□□□□ -1.72
CD44-231	ENST00000531110	C16orf95	Q9H693	158 aa		4.28	□□□□□ -1.72
CD44-231	ENST00000531110	MDC1	Q14676	2089 aa	Known RBP	4.28	□□□□□ -1.72
CD44-231	ENST00000531110	PTPRB	P23467	1997 aa		4.27	□□□□□ -1.73
CD44-231	ENST00000531110	GTF3C1	Q12789	2109 aa		4.27	□□□□□ -1.73
CD44-231	ENST00000531110	NCOA6	Q14686	2063 aa	Predicted RBP	4.27	□□□□□ -1.73
CD44-231	ENST00000531110	ATP6V0E1	O15342	81 aa		4.27	□□□□□ -1.73
CD44-231	ENST00000531110	LYZL6	O75951	148 aa		4.27	□□□□□ -1.73
CD44-231	ENST00000531110	OXT	P01178	125 aa		4.27	□□□□□ -1.73
CD44-231	ENST00000531110	CA6	P23280	308 aa		4.27	□□□□□ -1.73
CD44-231	ENST00000531110	UBE2D1	P51668	147 aa		4.27	□□□□□ -1.73
CD44-231	ENST00000531110	FAM53A	Q6NSI3	398 aa	Predicted RBP	4.27	□□□□□ -1.73
CD44-231	ENST00000531110	ZNF493	Q6ZR52	646 aa		4.27	□□□□□ -1.73
CD44-231	ENST00000531110	LINC00311	Q8N616	119 aa		4.27	□□□□□ -1.73
CD44-231	ENST00000531110	GATAD1	Q8WUU5	269 aa		4.27	□□□□□ -1.73
CD44-231	ENST00000531110	FAM19A4	Q96LR4	140 aa		4.27	□□□□□ -1.73
CD44-231	ENST00000531110	C18orf15	Q96N68	181 aa		4.27	□□□□□ -1.73
CD44-231	ENST00000531110	S1PR3	Q99500	378 aa		4.27	□□□□□ -1.73
CD44-231	ENST00000531110	CHCHD5	Q9BSY4	110 aa		4.27	□□□□□ -1.73
CD44-231	ENST00000531110	UPK3B	Q9BT76	320 aa		4.27	□□□□□ -1.73
CD44-231	ENST00000531110	PAXX	Q9BUH6	204 aa		4.27	□□□□□ -1.73
CD44-231	ENST00000531110	LIME1	Q9H400	295 aa		4.27	□□□□□ -1.73
CD44-231	ENST00000531110	GLIPR2	Q9H4G4	154 aa		4.27	□□□□□ -1.73
CD44-231	ENST00000531110	DPH3P1	Q9H4G8	78 aa		4.27	□□□□□ -1.73
CD44-231	ENST00000531110	FGF22	Q9HCT0	170 aa		4.27	□□□□□ -1.73
CD44-231	ENST00000531110	DYNLRB1	Q9NP97	96 aa		4.27	□□□□□ -1.73
CD44-231	ENST00000531110		Q9UF83	564 aa		4.27	□□□□□ -1.73
CD44-231	ENST00000531110	C19orf25	Q9UFG5	118 aa	Predicted RBP	4.27	□□□□□ -1.73
CD44-231	ENST00000531110	HILPDA	Q9Y5L2	63 aa		4.27	□□□□□ -1.73
CD44-231	ENST00000531110	TRPM6	Q9BX84	2022 aa		4.27	□□□□□ -1.73
CD44-231	ENST00000531110	DOCK4	Q8N1I0	1966 aa		4.27	□□□□□ -1.73
CD44-231	ENST00000531110	ZNF831	Q5JPB2	1677 aa		4.26	□□□□□ -1.73
CD44-231	ENST00000531110	IGLV9-49	A0A0B4J1Y8	123 aa		4.26	□□□□□ -1.73
CD44-231	ENST00000531110	LYRM9	A8MSI8	78 aa		4.26	□□□□□ -1.73
CD44-231	ENST00000531110	EPPIN	O95925	133 aa		4.26	□□□□□ -1.73
CD44-231	ENST00000531110	FRMD6-AS1	P0C7T7	363 aa		4.26	□□□□□ -1.73
CD44-231	ENST00000531110	GFER	P55789	205 aa		4.26	□□□□□ -1.73
CD44-231	ENST00000531110	ABCA11P	Q4W5N1	156 aa		4.26	□□□□□ -1.73
CD44-231	ENST00000531110	LINC01590	Q5TEZ4	76 aa		4.26	□□□□□ -1.73
CD44-231	ENST00000531110		Q6ZQT7	251 aa		4.26	□□□□□ -1.73
CD44-231	ENST00000531110	GVQW1	Q8N7I0	195 aa		4.26	□□□□□ -1.73
CD44-231	ENST00000531110	NABP1	Q96AH0	204 aa		4.26	□□□□□ -1.73
CD44-231	ENST00000531110	BORCS8	Q96FH0	119 aa		4.26	□□□□□ -1.73
CD44-231	ENST00000531110	ZC2HC1A	Q96GY0	325 aa		4.26	□□□□□ -1.73
CD44-231	ENST00000531110	DEFB118	Q96PH6	123 aa		4.26	□□□□□ -1.73
CD44-231	ENST00000531110	AICDA	Q9GZX7	198 aa		4.26	□□□□□ -1.73
CD44-231	ENST00000531110	DAZ1	Q9NQZ3	744 aa	Known RBP	4.26	□□□□□ -1.73
CD44-231	ENST00000531110	NHP2	Q9NX24	153 aa	Known RBP	4.26	□□□□□ -1.73
CD44-231	ENST00000531110	CALY	Q9NYX4	217 aa		4.26	□□□□□ -1.73
CD44-231	ENST00000531110	TP73-AS1	Q9UF72	201 aa		4.26	□□□□□ -1.73
CD44-231	ENST00000531110	PTPRD	P23468	1912 aa		4.26	□□□□□ -1.73
CD44-231	ENST00000531110	SCN10A	Q9Y5Y9	1956 aa		4.25	□□□□□ -1.73
CD44-231	ENST00000531110	TRBV20OR9-2	A0A075B6H5	130 aa		4.25	□□□□□ -1.73
CD44-231	ENST00000531110	TRBV7-3	A0A075B6L6	115 aa		4.25	□□□□□ -1.73
CD44-231	ENST00000531110	TRBV25-1	A0A075B6N4	114 aa		4.25	□□□□□ -1.73
CD44-231	ENST00000531110	LOC101059948	A0A1B0GTJ6	334 aa		4.25	□□□□□ -1.73
CD44-231	ENST00000531110	SMCHD1	A6NHR9	2005 aa		4.25	□□□□□ -1.73
CD44-231	ENST00000531110	NDUFC1	O43677	76 aa		4.25	□□□□□ -1.73
CD44-231	ENST00000531110	SLC25A20	O43772	301 aa		4.25	□□□□□ -1.73
CD44-231	ENST00000531110	IGLV1-44	P01699	117 aa		4.25	□□□□□ -1.73
CD44-231	ENST00000531110	KRTAP10-6	P60371	365 aa	Predicted RBP	4.25	□□□□□ -1.73
CD44-231	ENST00000531110	HERV-K104	P61576	105 aa		4.25	□□□□□ -1.73
CD44-231	ENST00000531110	FKBP1B	P68106	108 aa		4.25	□□□□□ -1.73
CD44-231	ENST00000531110	ADIG	Q0VDE8	80 aa		4.25	□□□□□ -1.73
CD44-231	ENST00000531110	ERCC8	Q13216	396 aa		4.25	□□□□□ -1.73
CD44-231	ENST00000531110	RSPO1	Q2MKA7	263 aa	Predicted RBP	4.25	□□□□□ -1.73
CD44-231	ENST00000531110	LYZL2	Q7Z4W2	148 aa		4.25	□□□□□ -1.73
CD44-231	ENST00000531110	NDUFA11	Q86Y39	141 aa		4.25	□□□□□ -1.73
CD44-231	ENST00000531110	DEFB106A	Q8N104	65 aa		4.25	□□□□□ -1.73
CD44-231	ENST00000531110	RNF182	Q8N6D2	247 aa		4.25	□□□□□ -1.73
CD44-231	ENST00000531110	FGFBP3	Q8TAT2	258 aa		4.25	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 91.1 ms