RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 AP5S1Q9NUS5 200 aa16.54■□□□□ 0.24
VPS28-205ENST00000526204 IGKV2-40A0A087WW87 121 aaPredicted RBP16.54■□□□□ 0.24
VPS28-205ENST00000526204 DLEU1O43261 78 aa16.54■□□□□ 0.24
VPS28-205ENST00000526204 NDUFS7O75251 213 aa16.54■□□□□ 0.24
VPS28-205ENST00000526204 IGKV2D-40P01614 121 aaPredicted RBP16.54■□□□□ 0.24
VPS28-205ENST00000526204 ZNF138P52744 262 aa16.54■□□□□ 0.24
VPS28-205ENST00000526204 PRB4P10163 310 aaPredicted RBP16.53■□□□□ 0.24
VPS28-205ENST00000526204 BMI1P35226 326 aa16.53■□□□□ 0.24
VPS28-205ENST00000526204 RPS20P60866 119 aaKnown RBP16.53■□□□□ 0.24
VPS28-205ENST00000526204 LYZL1Q6UWQ5 148 aa16.53■□□□□ 0.24
VPS28-205ENST00000526204 LINC00173Q6ZV60 143 aa16.53■□□□□ 0.24
VPS28-205ENST00000526204 UBTD1Q9HAC8 227 aa16.53■□□□□ 0.24
VPS28-205ENST00000526204 SMAD5-AS1Q9Y6J3 95 aa16.53■□□□□ 0.24
VPS28-205ENST00000526204 DCHS2Q6V1P9 2916 aa16.53■□□□□ 0.24
VPS28-205ENST00000526204 CSN3P07498 182 aa16.52■□□□□ 0.24
VPS28-205ENST00000526204 ZNF124Q15973 351 aa16.52■□□□□ 0.24
VPS28-205ENST00000526204 UNQ5815/PRO19632Q6UWF5 114 aa16.52■□□□□ 0.24
VPS28-205ENST00000526204 ZNF502Q8TBZ5 544 aa16.52■□□□□ 0.24
VPS28-205ENST00000526204 C15orf32Q32M92 178 aa16.52■□□□□ 0.23
VPS28-205ENST00000526204 AJUBAQ96IF1 538 aa16.52■□□□□ 0.23
VPS28-205ENST00000526204 FA2HQ7L5A8 372 aa16.51■□□□□ 0.23
VPS28-205ENST00000526204 PRSS3P2Q8NHM4 247 aa16.51■□□□□ 0.23
VPS28-205ENST00000526204 NCOR2Q9Y618 2525 aa16.51■□□□□ 0.23
VPS28-205ENST00000526204 SAA4P35542 130 aa16.5■□□□□ 0.23
VPS28-205ENST00000526204 STPG4Q8N801 248 aa16.5■□□□□ 0.23
VPS28-205ENST00000526204 HSBP1L1C9JCN9 74 aa16.49■□□□□ 0.23
VPS28-205ENST00000526204 SFTPCP11686 197 aa16.49■□□□□ 0.23
VPS28-205ENST00000526204 GPR183P32249 361 aa16.49■□□□□ 0.23
VPS28-205ENST00000526204 RHOGP84095 191 aa16.49■□□□□ 0.23
VPS28-205ENST00000526204 SRSF2Q01130 221 aaKnown RBP16.49■□□□□ 0.23
VPS28-205ENST00000526204 ECSCRQ19T08 205 aa16.49■□□□□ 0.23
VPS28-205ENST00000526204 FAM104BQ5XKR9 115 aa16.49■□□□□ 0.23
VPS28-205ENST00000526204 U3KQK5 164 aa16.49■□□□□ 0.23
VPS28-205ENST00000526204 A0A087X0K7 114 aa16.49■□□□□ 0.23
VPS28-205ENST00000526204 TMSB15BA0A087X1C1 80 aa16.49■□□□□ 0.23
VPS28-205ENST00000526204 ATP6V0E1O15342 81 aa16.49■□□□□ 0.23
VPS28-205ENST00000526204 GOSR1O95249 250 aa16.49■□□□□ 0.23
VPS28-205ENST00000526204 IGHG4P01861 327 aa16.49■□□□□ 0.23
VPS28-205ENST00000526204 TFPI2P48307 235 aa16.49■□□□□ 0.23
VPS28-205ENST00000526204 LMO4P61968 165 aa16.49■□□□□ 0.23
VPS28-205ENST00000526204 OR10AG1Q8NH19 301 aa16.49■□□□□ 0.23
VPS28-205ENST00000526204 GOLT1BQ9Y3E0 138 aa16.49■□□□□ 0.23
VPS28-205ENST00000526204 PIEZO1Q92508 2521 aa16.49■□□□□ 0.23
VPS28-205ENST00000526204 ATRXP46100 2492 aa16.48■□□□□ 0.23
VPS28-205ENST00000526204 CLEC3BP05452 202 aa16.48■□□□□ 0.23
VPS28-205ENST00000526204 VGLL1Q99990 258 aa16.48■□□□□ 0.23
VPS28-205ENST00000526204 ZFAND3Q9H8U3 227 aa16.48■□□□□ 0.23
VPS28-205ENST00000526204 HRNRQ86YZ3 2850 aaPredicted RBP16.47■□□□□ 0.23
VPS28-205ENST00000526204 ORMDL3Q8N138 153 aa16.47■□□□□ 0.23
VPS28-205ENST00000526204 TMEM213A2RRL7 107 aa16.46■□□□□ 0.23
VPS28-205ENST00000526204 BUB3O43684 328 aa16.46■□□□□ 0.23
VPS28-205ENST00000526204 FER1L6-AS1Q8NA97 138 aa16.46■□□□□ 0.23
VPS28-205ENST00000526204 BPESC1Q9GZL8 116 aa16.46■□□□□ 0.23
VPS28-205ENST00000526204 IGHV3-35A0A0C4DH35 117 aa16.46■□□□□ 0.23
VPS28-205ENST00000526204 CENPVL3A0A0U1RRI6 287 aa16.46■□□□□ 0.23
VPS28-205ENST00000526204 D6R8Y8 96 aa16.46■□□□□ 0.23
VPS28-205ENST00000526204 NPFFO15130 113 aa16.46■□□□□ 0.23
VPS28-205ENST00000526204 LINC01545Q5VT33 79 aa16.46■□□□□ 0.23
VPS28-205ENST00000526204 Q8TAT8 98 aa16.46■□□□□ 0.23
VPS28-205ENST00000526204 PRELID3AQ96N28 172 aa16.46■□□□□ 0.23
VPS28-205ENST00000526204 ZNF747Q9BV97 191 aa16.46■□□□□ 0.23
VPS28-205ENST00000526204 MS4A6AQ9H2W1 248 aa16.46■□□□□ 0.23
VPS28-205ENST00000526204 RBAKDNA6NC62 111 aa16.45■□□□□ 0.22
VPS28-205ENST00000526204 HINT1P49773 126 aaPredicted RBP16.45■□□□□ 0.22
VPS28-205ENST00000526204 SLC50A1Q9BRV3 221 aa16.45■□□□□ 0.22
VPS28-205ENST00000526204 IGHV3OR16-8A0A075B7F1 116 aa16.45■□□□□ 0.22
VPS28-205ENST00000526204 TRBV7-1A0A0A6YYK4 115 aa16.45■□□□□ 0.22
VPS28-205ENST00000526204 IGFL4Q6B9Z1 124 aa16.45■□□□□ 0.22
VPS28-205ENST00000526204 AMN1Q8IY45 258 aa16.45■□□□□ 0.22
VPS28-205ENST00000526204 EEF1AKMT3Q96AZ1 226 aa16.45■□□□□ 0.22
VPS28-205ENST00000526204 hDV102S1A0JD36 115 aa16.44■□□□□ 0.22
VPS28-205ENST00000526204 FABP5P3A8MUU1 101 aa16.44■□□□□ 0.22
VPS28-205ENST00000526204 IGLC6P0CF74 106 aa16.44■□□□□ 0.22
VPS28-205ENST00000526204 HLA-DMBP28068 263 aa16.44■□□□□ 0.22
VPS28-205ENST00000526204 IFI27P40305 119 aaPredicted RBP16.44■□□□□ 0.22
VPS28-205ENST00000526204 ZNF80P51504 273 aaPredicted RBP16.44■□□□□ 0.22
VPS28-205ENST00000526204 LY6DQ14210 128 aa16.43■□□□□ 0.22
VPS28-205ENST00000526204 ITLN2Q8WWU7 325 aaPredicted RBP16.43■□□□□ 0.22
VPS28-205ENST00000526204 SIGLEC8Q9NYZ4 499 aa16.43■□□□□ 0.22
VPS28-205ENST00000526204 TWIST1Q15672 202 aa16.43■□□□□ 0.22
VPS28-205ENST00000526204 MRPL51Q4U2R6 128 aaKnown RBP16.43■□□□□ 0.22
VPS28-205ENST00000526204 SLC25A34Q6PIV7 304 aa16.43■□□□□ 0.22
VPS28-205ENST00000526204 CCDC140Q96MF4 163 aa16.43■□□□□ 0.22
VPS28-205ENST00000526204 NBASA2RRP1 2371 aa16.43■□□□□ 0.22
VPS28-205ENST00000526204 NPSP0C0P6 89 aa16.42■□□□□ 0.22
VPS28-205ENST00000526204 CLEC19AQ6UXS0 136 aa16.42■□□□□ 0.22
VPS28-205ENST00000526204 PIP4P2Q8N4L2 257 aa16.42■□□□□ 0.22
VPS28-205ENST00000526204 TIMM8BQ9Y5J9 83 aaPredicted RBP16.42■□□□□ 0.22
VPS28-205ENST00000526204 G3V318 75 aa16.42■□□□□ 0.22
VPS28-205ENST00000526204 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa16.42■□□□□ 0.22
VPS28-205ENST00000526204 CLPSL1A2RUU4 121 aa16.41■□□□□ 0.22
VPS28-205ENST00000526204 H0Y8G0 127 aa16.41■□□□□ 0.22
VPS28-205ENST00000526204 ORM1P02763 201 aa16.41■□□□□ 0.22
VPS28-205ENST00000526204 C5orf56Q8N8D9 126 aa16.41■□□□□ 0.22
VPS28-205ENST00000526204 ORAOV1Q8WV07 137 aa16.41■□□□□ 0.22
VPS28-205ENST00000526204 ATP6V0BQ99437 205 aa16.41■□□□□ 0.22
VPS28-205ENST00000526204 CNFNQ9BYD5 112 aa16.41■□□□□ 0.22
VPS28-205ENST00000526204 METTL26Q96S19 204 aa16.4■□□□□ 0.22
VPS28-205ENST00000526204 SCRT2Q9NQ03 307 aa16.4■□□□□ 0.22
VPS28-205ENST00000526204 ITPR1Q14643 2758 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms