RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 RNF175Q8N4F7 328 aa3.22□□□□□ -1.89
CD44-220ENST00000525688 LINC01006Q8NI28 216 aa3.22□□□□□ -1.89
CD44-220ENST00000525688 ZNF799Q96GE5 643 aa3.22□□□□□ -1.89
CD44-220ENST00000525688 IMMP1LQ96LU5 166 aa3.22□□□□□ -1.89
CD44-220ENST00000525688 AP1S3Q96PC3 154 aa3.22□□□□□ -1.89
CD44-220ENST00000525688 DERL3Q96Q80 235 aa3.22□□□□□ -1.89
CD44-220ENST00000525688 CAMK2N2Q96S95 79 aa3.22□□□□□ -1.89
CD44-220ENST00000525688 MGLLQ99685 303 aa3.22□□□□□ -1.89
CD44-220ENST00000525688 NKX6-2Q9C056 277 aaPredicted RBP3.22□□□□□ -1.89
CD44-220ENST00000525688 FGF23Q9GZV9 251 aaPredicted RBP3.22□□□□□ -1.89
CD44-220ENST00000525688 RNF11Q9Y3C5 154 aa3.22□□□□□ -1.89
CD44-220ENST00000525688 USP9XQ93008 2570 aaPredicted RBP3.22□□□□□ -1.89
CD44-220ENST00000525688 NUP210LQ5VU65 1888 aa3.22□□□□□ -1.89
CD44-220ENST00000525688 DOCK10Q96BY6 2186 aa3.21□□□□□ -1.9
CD44-220ENST00000525688 TRAV30A0A087WSZ9 112 aa3.21□□□□□ -1.9
CD44-220ENST00000525688 LOC100130705A0A1B0GUX0 176 aa3.21□□□□□ -1.9
CD44-220ENST00000525688 TMEM218A2RU14 115 aa3.21□□□□□ -1.9
CD44-220ENST00000525688 LINC00862A6NCI5 91 aa3.21□□□□□ -1.9
CD44-220ENST00000525688 TMEM212A6NML5 194 aa3.21□□□□□ -1.9
CD44-220ENST00000525688 UBFD1O14562 309 aaKnown RBP3.21□□□□□ -1.9
CD44-220ENST00000525688 UBE2L6O14933 153 aa3.21□□□□□ -1.9
CD44-220ENST00000525688 NPFFO15130 113 aa3.21□□□□□ -1.9
CD44-220ENST00000525688 PLA2G10O15496 165 aa3.21□□□□□ -1.9
CD44-220ENST00000525688 ZNF73O43830 326 aaPredicted RBP3.21□□□□□ -1.9
CD44-220ENST00000525688 NCR2O95944 276 aa3.21□□□□□ -1.9
CD44-220ENST00000525688 IGHV3-11P01762 117 aa3.21□□□□□ -1.9
CD44-220ENST00000525688 MT-ND4LP03901 98 aa3.21□□□□□ -1.9
CD44-220ENST00000525688 SRP19P09132 144 aaKnown RBP3.21□□□□□ -1.9
CD44-220ENST00000525688 CD7P09564 240 aa3.21□□□□□ -1.9
CD44-220ENST00000525688 KRTAP1-4P0C5Y4 121 aa3.21□□□□□ -1.9
CD44-220ENST00000525688 LINC00869P0C866 280 aa3.21□□□□□ -1.9
CD44-220ENST00000525688 IGLC6P0CF74 106 aa3.21□□□□□ -1.9
CD44-220ENST00000525688 ZNF705DP0CH99 300 aaPredicted RBP3.21□□□□□ -1.9
CD44-220ENST00000525688 ZNF728P0DKX0 622 aa3.21□□□□□ -1.9
CD44-220ENST00000525688 CRISP2P16562 243 aa3.21□□□□□ -1.9
CD44-220ENST00000525688 S100A2P29034 98 aa3.21□□□□□ -1.9
CD44-220ENST00000525688 SSR2P43308 183 aa3.21□□□□□ -1.9
CD44-220ENST00000525688 FGF12P61328 243 aa3.21□□□□□ -1.9
CD44-220ENST00000525688 ZNF141Q15928 474 aa3.21□□□□□ -1.9
CD44-220ENST00000525688 RRN3P1Q2M238 152 aa3.21□□□□□ -1.9
CD44-220ENST00000525688 NCMAPQ5T1S8 102 aa3.21□□□□□ -1.9
CD44-220ENST00000525688 C1orf140Q5VVS0 124 aa3.21□□□□□ -1.9
CD44-220ENST00000525688 CRYBG3Q68DQ2 2970 aa3.21□□□□□ -1.9
CD44-220ENST00000525688 MORN3Q6PF18 240 aaPredicted RBP3.21□□□□□ -1.9
CD44-220ENST00000525688 Q6ZS92 163 aa3.21□□□□□ -1.9
CD44-220ENST00000525688 CAMK2N1Q7Z7J9 78 aa3.21□□□□□ -1.9
CD44-220ENST00000525688 C4orf33Q8N1A6 199 aa3.21□□□□□ -1.9
CD44-220ENST00000525688 APCDD1LQ8NCL9 501 aa3.21□□□□□ -1.9
CD44-220ENST00000525688 OR8A1Q8NGG7 326 aa3.21□□□□□ -1.9
CD44-220ENST00000525688 OR5A2Q8NGI9 324 aa3.21□□□□□ -1.9
CD44-220ENST00000525688 TSLPQ969D9 159 aa3.21□□□□□ -1.9
CD44-220ENST00000525688 EFCAB1Q9HAE3 211 aa3.21□□□□□ -1.9
CD44-220ENST00000525688 TP73-AS1Q9UF72 201 aa3.21□□□□□ -1.9
CD44-220ENST00000525688 BOKQ9UMX3 212 aaPredicted RBP3.21□□□□□ -1.9
CD44-220ENST00000525688 BAIAP2Q9UQB8 552 aa3.21□□□□□ -1.9
CD44-220ENST00000525688 RAI1Q7Z5J4 1906 aaPredicted RBP3.21□□□□□ -1.9
CD44-220ENST00000525688 TNRC6AQ8NDV7 1962 aaKnown RBP3.2□□□□□ -1.9
CD44-220ENST00000525688 CENPEQ02224 2701 aa3.2□□□□□ -1.9
CD44-220ENST00000525688 IGLV1-50A0A075B6I6 118 aa3.2□□□□□ -1.9
CD44-220ENST00000525688 IGKV1D-43A0A0B4J1Z2 117 aa3.2□□□□□ -1.9
CD44-220ENST00000525688 TRBV7-6A0A0J9YX20 115 aa3.2□□□□□ -1.9
CD44-220ENST00000525688 GGT3PA6NGU5 568 aa3.2□□□□□ -1.9
CD44-220ENST00000525688 IFITM5A6NNB3 132 aa3.2□□□□□ -1.9
CD44-220ENST00000525688 GGTLC3B5MD39 225 aa3.2□□□□□ -1.9
CD44-220ENST00000525688 H3BQF6 201 aa3.2□□□□□ -1.9
CD44-220ENST00000525688 TAX1BP3O14907 124 aa3.2□□□□□ -1.9
CD44-220ENST00000525688 LYZL6O75951 148 aa3.2□□□□□ -1.9
CD44-220ENST00000525688 NFYBP25208 207 aa3.2□□□□□ -1.9
CD44-220ENST00000525688 GNG4P50150 75 aa3.2□□□□□ -1.9
CD44-220ENST00000525688 FOXA1P55317 472 aa3.2□□□□□ -1.9
CD44-220ENST00000525688 CDK6Q00534 326 aa3.2□□□□□ -1.9
CD44-220ENST00000525688 ATP5G2Q06055 141 aa3.2□□□□□ -1.9
CD44-220ENST00000525688 TMEM244Q5VVB8 128 aa3.2□□□□□ -1.9
CD44-220ENST00000525688 SCXQ7RTU7 201 aa3.2□□□□□ -1.9
CD44-220ENST00000525688 COMMD6Q7Z4G1 85 aa3.2□□□□□ -1.9
CD44-220ENST00000525688 MSRB3Q8IXL7 192 aa3.2□□□□□ -1.9
CD44-220ENST00000525688 H1FOOQ8IZA3 346 aaPredicted RBP3.2□□□□□ -1.9
CD44-220ENST00000525688 ORMDL3Q8N138 153 aa3.2□□□□□ -1.9
CD44-220ENST00000525688 RPP25LQ8N5L8 163 aaKnown RBP3.2□□□□□ -1.9
CD44-220ENST00000525688 ZNF436-AS1Q8NC38 126 aaPredicted RBP3.2□□□□□ -1.9
CD44-220ENST00000525688 OR4S1Q8NGB4 309 aa3.2□□□□□ -1.9
CD44-220ENST00000525688 C15orf40Q8WUR7 153 aa3.2□□□□□ -1.9
CD44-220ENST00000525688 H1FXQ92522 213 aaKnown RBP3.2□□□□□ -1.9
CD44-220ENST00000525688 MAL2Q969L2 176 aa3.2□□□□□ -1.9
CD44-220ENST00000525688 TUBA4BQ9H853 241 aa3.2□□□□□ -1.9
CD44-220ENST00000525688 CKLFQ9UBR5 152 aa3.2□□□□□ -1.9
CD44-220ENST00000525688 CELSR2Q9HCU4 2923 aa3.2□□□□□ -1.9
CD44-220ENST00000525688 SCN2AQ99250 2005 aa3.2□□□□□ -1.9
CD44-220ENST00000525688 USP9YO00507 2555 aaPredicted RBP3.19□□□□□ -1.9
CD44-220ENST00000525688 HECTD1Q9ULT8 2610 aa3.19□□□□□ -1.9
CD44-220ENST00000525688 TACC2O95359 2948 aa3.19□□□□□ -1.9
CD44-220ENST00000525688 IGHV3OR15-7A0A075B7D8 119 aa3.19□□□□□ -1.9
CD44-220ENST00000525688 IGKV1-12A0A0C4DH73 117 aa3.19□□□□□ -1.9
CD44-220ENST00000525688 IRGMA1A4Y4 181 aa3.19□□□□□ -1.9
CD44-220ENST00000525688 MEIS3P1A6NDR6 274 aa3.19□□□□□ -1.9
CD44-220ENST00000525688 C9JCJ5 164 aa3.19□□□□□ -1.9
CD44-220ENST00000525688 INS-IGF2F8WCM5 200 aa3.19□□□□□ -1.9
CD44-220ENST00000525688 J3QKU1 62 aa3.19□□□□□ -1.9
CD44-220ENST00000525688 SOCS1O15524 211 aa3.19□□□□□ -1.9
CD44-220ENST00000525688 SCO1O75880 301 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 272.2 ms