RNA–Protein interactions for RNA: ENST00000517578.1

HMGB1P19-201, Transcript of high mobility group box 1 pseudogene 19, humanhuman

BASIC

Gene HMGB1P19, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P19-201ENST00000517578 COL8A2P25067 703 aa3.78□□□□□ -1.8
HMGB1P19-201ENST00000517578 FBXW4P57775 412 aa3.78□□□□□ -1.8
HMGB1P19-201ENST00000517578 PCBD1P61457 104 aa3.78□□□□□ -1.8
HMGB1P19-201ENST00000517578 VMA21Q3ZAQ7 101 aa3.78□□□□□ -1.8
HMGB1P19-201ENST00000517578 ZNF542PQ5EBM4 170 aa3.78□□□□□ -1.8
HMGB1P19-201ENST00000517578 FAM201AQ5SY85 155 aa3.78□□□□□ -1.8
HMGB1P19-201ENST00000517578 Q5XG85 94 aa3.78□□□□□ -1.8
HMGB1P19-201ENST00000517578 Q6ZQT7 251 aa3.78□□□□□ -1.8
HMGB1P19-201ENST00000517578 LINC00336Q6ZUF6 198 aa3.78□□□□□ -1.8
HMGB1P19-201ENST00000517578 C1orf158Q8N1D5 194 aa3.78□□□□□ -1.8
HMGB1P19-201ENST00000517578 Q8N7P7 452 aa3.78□□□□□ -1.8
HMGB1P19-201ENST00000517578 C18orf15Q96N68 181 aa3.78□□□□□ -1.8
HMGB1P19-201ENST00000517578 SHANK2-AS3Q9BTD1 123 aa3.78□□□□□ -1.8
HMGB1P19-201ENST00000517578 LSM4Q9Y4Z0 139 aaKnown RBP3.78□□□□□ -1.8
HMGB1P19-201ENST00000517578 TIMM8BQ9Y5J9 83 aaPredicted RBP3.78□□□□□ -1.8
HMGB1P19-201ENST00000517578 HEATR5BQ9P2D3 2071 aa3.77□□□□□ -1.81
HMGB1P19-201ENST00000517578 ARHGAP21Q5T5U3 1957 aa3.77□□□□□ -1.81
HMGB1P19-201ENST00000517578 TRAV12-1A0A0B4J245 112 aa3.77□□□□□ -1.81
HMGB1P19-201ENST00000517578 A0A0B4J2C4 111 aa3.77□□□□□ -1.81
HMGB1P19-201ENST00000517578 IGKV1D-13A0A0B4J2D9 117 aa3.77□□□□□ -1.81
HMGB1P19-201ENST00000517578 TRGV8A0A0C4DH27 118 aa3.77□□□□□ -1.81
HMGB1P19-201ENST00000517578 TMEM150CB9EJG8 249 aa3.77□□□□□ -1.81
HMGB1P19-201ENST00000517578 CDX4O14627 284 aaPredicted RBP3.77□□□□□ -1.81
HMGB1P19-201ENST00000517578 BCE1O60756 84 aa3.77□□□□□ -1.81
HMGB1P19-201ENST00000517578 LYZL6O75951 148 aa3.77□□□□□ -1.81
HMGB1P19-201ENST00000517578 TCL1BO95988 128 aa3.77□□□□□ -1.81
HMGB1P19-201ENST00000517578 PLAUP00749 431 aa3.77□□□□□ -1.81
HMGB1P19-201ENST00000517578 P0C879 139 aa3.77□□□□□ -1.81
HMGB1P19-201ENST00000517578 IGKV1-13P0DP09 117 aa3.77□□□□□ -1.81
HMGB1P19-201ENST00000517578 EDN2P20800 178 aa3.77□□□□□ -1.81
HMGB1P19-201ENST00000517578 SUB1P53999 127 aaKnown RBP eCLIP3.77□□□□□ -1.81
HMGB1P19-201ENST00000517578 ATP5EP56381 51 aaPredicted RBP3.77□□□□□ -1.81
HMGB1P19-201ENST00000517578 FGF12P61328 243 aa3.77□□□□□ -1.81
HMGB1P19-201ENST00000517578 HERVK_113P61574 105 aa3.77□□□□□ -1.81
HMGB1P19-201ENST00000517578 ERVK-16P61578 105 aa3.77□□□□□ -1.81
HMGB1P19-201ENST00000517578 LOXL1Q08397 574 aaPredicted RBP3.77□□□□□ -1.81
HMGB1P19-201ENST00000517578 LINC01620Q4KN68 170 aa3.77□□□□□ -1.81
HMGB1P19-201ENST00000517578 ZC2HC1BQ5TFG8 222 aa3.77□□□□□ -1.81
HMGB1P19-201ENST00000517578 ASPHD1Q5U4P2 390 aa3.77□□□□□ -1.81
HMGB1P19-201ENST00000517578 MIC13Q5XKP0 118 aa3.77□□□□□ -1.81
HMGB1P19-201ENST00000517578 C5orf38Q86SI9 138 aa3.77□□□□□ -1.81
HMGB1P19-201ENST00000517578 GTSCR1Q86UQ5 136 aa3.77□□□□□ -1.81
HMGB1P19-201ENST00000517578 NDUFA11Q86Y39 141 aa3.77□□□□□ -1.81
HMGB1P19-201ENST00000517578 KLHDC9Q8NEP7 349 aa3.77□□□□□ -1.81
HMGB1P19-201ENST00000517578 UBALD1Q8TB05 177 aa3.77□□□□□ -1.81
HMGB1P19-201ENST00000517578 PGLYRP4Q96LB8 373 aa3.77□□□□□ -1.81
HMGB1P19-201ENST00000517578 FAM173AQ9BQD7 235 aa3.77□□□□□ -1.81
HMGB1P19-201ENST00000517578 C6orf106Q9H6K1 298 aaPredicted RBP3.77□□□□□ -1.81
HMGB1P19-201ENST00000517578 BEX4Q9NWD9 120 aaPredicted RBP3.77□□□□□ -1.81
HMGB1P19-201ENST00000517578 LINC00527Q9UJ94 153 aa3.77□□□□□ -1.81
HMGB1P19-201ENST00000517578 PKIGQ9Y2B9 76 aa3.77□□□□□ -1.81
HMGB1P19-201ENST00000517578 SPTBP11277 2137 aa3.77□□□□□ -1.81
HMGB1P19-201ENST00000517578 MYO9BQ13459 2157 aa3.76□□□□□ -1.81
HMGB1P19-201ENST00000517578 TMEM89A2RUT3 159 aa3.76□□□□□ -1.81
HMGB1P19-201ENST00000517578 C19orf71A6NCJ1 209 aa3.76□□□□□ -1.81
HMGB1P19-201ENST00000517578 PGPA6NDG6 321 aa3.76□□□□□ -1.81
HMGB1P19-201ENST00000517578 SRRM4A7MD48 611 aaKnown RBP3.76□□□□□ -1.81
HMGB1P19-201ENST00000517578 K7EMI3 77 aa3.76□□□□□ -1.81
HMGB1P19-201ENST00000517578 M0R135 149 aa3.76□□□□□ -1.81
HMGB1P19-201ENST00000517578 ZFAND5O76080 213 aa3.76□□□□□ -1.81
HMGB1P19-201ENST00000517578 IGKV1-39P01597 117 aa3.76□□□□□ -1.81
HMGB1P19-201ENST00000517578 IGKV1D-16P01601 117 aa3.76□□□□□ -1.81
HMGB1P19-201ENST00000517578 IGKV1D-39P04432 117 aa3.76□□□□□ -1.81
HMGB1P19-201ENST00000517578 WT1P19544 449 aaPredicted RBP3.76□□□□□ -1.81
HMGB1P19-201ENST00000517578 IFI27P40305 119 aaPredicted RBP3.76□□□□□ -1.81
HMGB1P19-201ENST00000517578 LEPP41159 167 aa3.76□□□□□ -1.81
HMGB1P19-201ENST00000517578 FOLR3P41439 243 aa3.76□□□□□ -1.81
HMGB1P19-201ENST00000517578 TNFRSF4P43489 277 aa3.76□□□□□ -1.81
HMGB1P19-201ENST00000517578 SSR4P51571 173 aa3.76□□□□□ -1.81
HMGB1P19-201ENST00000517578 TIRAPP58753 221 aa3.76□□□□□ -1.81
HMGB1P19-201ENST00000517578 PMAIP1Q13794 54 aa3.76□□□□□ -1.81
HMGB1P19-201ENST00000517578 RSPO1Q2MKA7 263 aaPredicted RBP3.76□□□□□ -1.81
HMGB1P19-201ENST00000517578 KHDC1LQ5JSQ8 128 aa3.76□□□□□ -1.81
HMGB1P19-201ENST00000517578 C2orf82Q6UX34 121 aa3.76□□□□□ -1.81
HMGB1P19-201ENST00000517578 SCGB1D4Q6XE38 83 aa3.76□□□□□ -1.81
HMGB1P19-201ENST00000517578 Q6ZR03 302 aa3.76□□□□□ -1.81
HMGB1P19-201ENST00000517578 FOXL2NBQ6ZUU3 175 aa3.76□□□□□ -1.81
HMGB1P19-201ENST00000517578 ZNF441Q8N8Z8 693 aa3.76□□□□□ -1.81
HMGB1P19-201ENST00000517578 NABP1Q96AH0 204 aa3.76□□□□□ -1.81
HMGB1P19-201ENST00000517578 NABP2Q9BQ15 211 aa3.76□□□□□ -1.81
HMGB1P19-201ENST00000517578 DEPPQ9NTK1 212 aa3.76□□□□□ -1.81
HMGB1P19-201ENST00000517578 CALYQ9NYX4 217 aa3.76□□□□□ -1.81
HMGB1P19-201ENST00000517578 PEMTQ9UBM1 199 aa3.76□□□□□ -1.81
HMGB1P19-201ENST00000517578 PHF3Q92576 2039 aaKnown RBP3.76□□□□□ -1.81
HMGB1P19-201ENST00000517578 PCDH15Q96QU1 1955 aa3.76□□□□□ -1.81
HMGB1P19-201ENST00000517578 SCN10AQ9Y5Y9 1956 aa3.76□□□□□ -1.81
HMGB1P19-201ENST00000517578 PCNX3Q9H6A9 2034 aa3.75□□□□□ -1.81
HMGB1P19-201ENST00000517578 TMSB15BA0A087X1C1 80 aa3.75□□□□□ -1.81
HMGB1P19-201ENST00000517578 TRGV5A0A0B4J1U4 118 aa3.75□□□□□ -1.81
HMGB1P19-201ENST00000517578 IGKV1-8A0A0C4DH67 115 aa3.75□□□□□ -1.81
HMGB1P19-201ENST00000517578 TRBV30A0A0K0K1B3 111 aa3.75□□□□□ -1.81
HMGB1P19-201ENST00000517578 LOC101059948A0A1B0GTJ6 334 aa3.75□□□□□ -1.81
HMGB1P19-201ENST00000517578 FAM236DA0A1B0GTK5 79 aa3.75□□□□□ -1.81
HMGB1P19-201ENST00000517578 KNCNA6PVL3 124 aa3.75□□□□□ -1.81
HMGB1P19-201ENST00000517578 TRIAP1O43715 76 aa3.75□□□□□ -1.81
HMGB1P19-201ENST00000517578 NGFP01138 241 aa3.75□□□□□ -1.81
HMGB1P19-201ENST00000517578 FREM3P0C091 2139 aa3.75□□□□□ -1.81
HMGB1P19-201ENST00000517578 CFC1BP0CG36 223 aa3.75□□□□□ -1.81
HMGB1P19-201ENST00000517578 CFC1P0CG37 223 aa3.75□□□□□ -1.81
HMGB1P19-201ENST00000517578 FAM236CP0DP71 79 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms