RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 MGAMO43451 1857 aa2.33□□□□□ -2.04
NUP54-215ENST00000514313 NISCHQ9Y2I1 1504 aa2.32□□□□□ -2.04
NUP54-215ENST00000514313 POLEQ07864 2286 aa2.32□□□□□ -2.04
NUP54-215ENST00000514313 F8W1H4 67 aa2.32□□□□□ -2.04
NUP54-215ENST00000514313 NUPR1O60356 82 aa2.32□□□□□ -2.04
NUP54-215ENST00000514313 DNAL4O96015 105 aa2.32□□□□□ -2.04
NUP54-215ENST00000514313 RPS3P23396 243 aaKnown RBP eCLIP2.32□□□□□ -2.04
NUP54-215ENST00000514313 NDUFA6P56556 154 aa2.32□□□□□ -2.04
NUP54-215ENST00000514313 LINC00305Q7Z4B0 112 aa2.32□□□□□ -2.04
NUP54-215ENST00000514313 ZNF431Q8TF32 576 aaPredicted RBP2.32□□□□□ -2.04
NUP54-215ENST00000514313 PLXNA4Q9HCM2 1894 aa2.32□□□□□ -2.04
NUP54-215ENST00000514313 BCL9O00512 1426 aa2.32□□□□□ -2.04
NUP54-215ENST00000514313 HEATR1Q9H583 2144 aaKnown RBP2.32□□□□□ -2.04
NUP54-215ENST00000514313 KRTAP10-4P60372 401 aaPredicted RBP2.31□□□□□ -2.04
NUP54-215ENST00000514313 CIRBPQ14011 172 aaKnown RBP2.31□□□□□ -2.04
NUP54-215ENST00000514313 OR5AS1Q8N127 324 aa2.31□□□□□ -2.04
NUP54-215ENST00000514313 TMEM35BQ8NCS4 154 aa2.31□□□□□ -2.04
NUP54-215ENST00000514313 OR5H6Q8NGV6 325 aa2.31□□□□□ -2.04
NUP54-215ENST00000514313 SKA2Q8WVK7 121 aaPredicted RBP2.31□□□□□ -2.04
NUP54-215ENST00000514313 MCEEQ96PE7 176 aa2.31□□□□□ -2.04
NUP54-215ENST00000514313 NIT2Q9NQR4 276 aa2.31□□□□□ -2.04
NUP54-215ENST00000514313 RFX7Q2KHR2 1363 aa2.31□□□□□ -2.04
NUP54-215ENST00000514313 C9orf170A2RU37 121 aa2.3□□□□□ -2.04
NUP54-215ENST00000514313 MRPS36P82909 103 aaKnown RBP2.3□□□□□ -2.04
NUP54-215ENST00000514313 TEN1Q86WV5 123 aa2.3□□□□□ -2.04
NUP54-215ENST00000514313 TEX29Q8N6K0 151 aa2.3□□□□□ -2.04
NUP54-215ENST00000514313 LXNQ9BS40 222 aa2.3□□□□□ -2.04
NUP54-215ENST00000514313 HSPB11Q9Y547 144 aa2.3□□□□□ -2.04
NUP54-215ENST00000514313 TECTAO75443 2155 aa2.29□□□□□ -2.04
NUP54-215ENST00000514313 NUP210Q8TEM1 1887 aaPredicted RBP2.29□□□□□ -2.04
NUP54-215ENST00000514313 KLF7O75840 302 aaPredicted RBP2.29□□□□□ -2.04
NUP54-215ENST00000514313 ARL14EPLP0DKL9 152 aa2.29□□□□□ -2.04
NUP54-215ENST00000514313 OR4B1Q8NGF8 309 aa2.29□□□□□ -2.04
NUP54-215ENST00000514313 PRELID3AQ96N28 172 aa2.29□□□□□ -2.04
NUP54-215ENST00000514313 TPRKBQ9Y3C4 175 aa2.29□□□□□ -2.04
NUP54-215ENST00000514313 CACNA1BQ00975 2339 aa2.29□□□□□ -2.04
NUP54-215ENST00000514313 PIK3C2AO00443 1686 aa2.28□□□□□ -2.04
NUP54-215ENST00000514313 FABP4P15090 132 aa2.28□□□□□ -2.04
NUP54-215ENST00000514313 CCL4L1Q8NHW4 92 aa2.28□□□□□ -2.04
NUP54-215ENST00000514313 PSMF1Q92530 271 aa2.28□□□□□ -2.04
NUP54-215ENST00000514313 TMEM14CQ9P0S9 112 aa2.28□□□□□ -2.04
NUP54-215ENST00000514313 DLG5Q8TDM6 1919 aa2.27□□□□□ -2.05
NUP54-215ENST00000514313 H3BMG7 143 aa2.27□□□□□ -2.05
NUP54-215ENST00000514313 H3BRM9 83 aa2.27□□□□□ -2.05
NUP54-215ENST00000514313 COX7CP15954 63 aa2.27□□□□□ -2.05
NUP54-215ENST00000514313 OR4C12Q96R67 309 aa2.27□□□□□ -2.05
NUP54-215ENST00000514313 C22orf24Q9Y442 160 aa2.27□□□□□ -2.05
NUP54-215ENST00000514313 NCOA6Q14686 2063 aaPredicted RBP2.27□□□□□ -2.05
NUP54-215ENST00000514313 TRAV13-1A0A0B4J241 112 aa2.26□□□□□ -2.05
NUP54-215ENST00000514313 TRBV27A0A0K0K1C4 114 aa2.26□□□□□ -2.05
NUP54-215ENST00000514313 LINC00322Q6ZN03 302 aaPredicted RBP2.26□□□□□ -2.05
NUP54-215ENST00000514313 OR10AG1Q8NH19 301 aa2.26□□□□□ -2.05
NUP54-215ENST00000514313 FREM3P0C091 2139 aa2.26□□□□□ -2.05
NUP54-215ENST00000514313 MCM3APO60318 1980 aa2.25□□□□□ -2.05
NUP54-215ENST00000514313 TRBV7-6A0A0J9YX20 115 aa2.25□□□□□ -2.05
NUP54-215ENST00000514313 MIR22HGQ0VDD5 57 aa2.25□□□□□ -2.05
NUP54-215ENST00000514313 VMA21Q3ZAQ7 101 aa2.25□□□□□ -2.05
NUP54-215ENST00000514313 TMEM229BQ8NBD8 167 aa2.25□□□□□ -2.05
NUP54-215ENST00000514313 TMEM138Q9NPI0 162 aa2.25□□□□□ -2.05
NUP54-215ENST00000514313 CECR2Q9BXF3 1484 aa2.25□□□□□ -2.05
NUP54-215ENST00000514313 COL24A1Q17RW2 1714 aa2.25□□□□□ -2.05
NUP54-215ENST00000514313 LOC107984640A0A0U1RRK4 108 aa2.24□□□□□ -2.05
NUP54-215ENST00000514313 C5orf58C9J3I9 102 aa2.24□□□□□ -2.05
NUP54-215ENST00000514313 DIAPH2-AS1Q14236 149 aa2.24□□□□□ -2.05
NUP54-215ENST00000514313 LINC00269Q8N2A0 174 aa2.24□□□□□ -2.05
NUP54-215ENST00000514313 CBLN4Q9NTU7 201 aa2.24□□□□□ -2.05
NUP54-215ENST00000514313 MYLKQ15746 1914 aa2.24□□□□□ -2.05
NUP54-215ENST00000514313 OTOGLQ3ZCN5 2332 aa2.24□□□□□ -2.05
NUP54-215ENST00000514313 KIAA1107Q9UPP5 1409 aa2.24□□□□□ -2.05
NUP54-215ENST00000514313 ANKRD31Q8N7Z5 1873 aa2.23□□□□□ -2.05
NUP54-215ENST00000514313 FOXA3P55318 350 aaPredicted RBP2.23□□□□□ -2.05
NUP54-215ENST00000514313 RPS28P62857 69 aaKnown RBP2.23□□□□□ -2.05
NUP54-215ENST00000514313 FOXI2Q6ZQN5 318 aa2.23□□□□□ -2.05
NUP54-215ENST00000514313 PYDC1Q8WXC3 89 aa2.23□□□□□ -2.05
NUP54-215ENST00000514313 CST11Q9H112 138 aa2.23□□□□□ -2.05
NUP54-215ENST00000514313 TPT1P13693 172 aaKnown RBP2.22□□□□□ -2.05
NUP54-215ENST00000514313 PSG9Q00887 426 aa2.22□□□□□ -2.05
NUP54-215ENST00000514313 C19orf12Q9NSK7 152 aa2.22□□□□□ -2.05
NUP54-215ENST00000514313 A0A096LPI6 279 aa2.21□□□□□ -2.06
NUP54-215ENST00000514313 M0QZK8 103 aa2.21□□□□□ -2.06
NUP54-215ENST00000514313 CRYGSP22914 178 aa2.21□□□□□ -2.06
NUP54-215ENST00000514313 MAXP61244 160 aa2.21□□□□□ -2.06
NUP54-215ENST00000514313 MORN4Q8NDC4 146 aa2.21□□□□□ -2.06
NUP54-215ENST00000514313 FKBP11Q9NYL4 201 aa2.21□□□□□ -2.06
NUP54-215ENST00000514313 COL6A6A6NMZ7 2263 aa2.21□□□□□ -2.06
NUP54-215ENST00000514313 CASP8AP2Q9UKL3 1982 aa2.21□□□□□ -2.06
NUP54-215ENST00000514313 ALPK3Q96L96 1907 aa2.21□□□□□ -2.06
NUP54-215ENST00000514313 ARL5CA6NH57 179 aa2.2□□□□□ -2.06
NUP54-215ENST00000514313 J3KT08 172 aa2.2□□□□□ -2.06
NUP54-215ENST00000514313 CLEC2BQ92478 149 aa2.2□□□□□ -2.06
NUP54-215ENST00000514313 PTPRFP10586 1907 aa2.2□□□□□ -2.06
NUP54-215ENST00000514313 A2MP01023 1474 aa2.2□□□□□ -2.06
NUP54-215ENST00000514313 UNC13CQ8NB66 2214 aa2.19□□□□□ -2.06
NUP54-215ENST00000514313 TRACP01848 142 aa2.19□□□□□ -2.06
NUP54-215ENST00000514313 KRTAP21-2Q3LI59 83 aa2.19□□□□□ -2.06
NUP54-215ENST00000514313 HAGHLQ6PII5 290 aaPredicted RBP2.19□□□□□ -2.06
NUP54-215ENST00000514313 BRK1Q8WUW1 75 aa2.19□□□□□ -2.06
NUP54-215ENST00000514313 ANP32BQ92688 251 aaKnown RBP2.19□□□□□ -2.06
NUP54-215ENST00000514313 TNFSF18Q9UNG2 199 aa2.19□□□□□ -2.06
NUP54-215ENST00000514313 DLC1Q96QB1 1528 aa2.18□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 140 ms