RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 UQCC3Q6UW78 93 aa13.32□□□□□ -0.28
SQSTM1-209ENST00000504627 Q6ZWC4 215 aa13.32□□□□□ -0.28
SQSTM1-209ENST00000504627 OR8I2Q8N0Y5 310 aa13.32□□□□□ -0.28
SQSTM1-209ENST00000504627 LOC102723971A0A1B0GUV8 181 aa13.31□□□□□ -0.28
SQSTM1-209ENST00000504627 SPRY2O43597 315 aa13.31□□□□□ -0.28
SQSTM1-209ENST00000504627 IGLC2P0DOY2 106 aa13.31□□□□□ -0.28
SQSTM1-209ENST00000504627 DEFB135Q30KP9 77 aa13.31□□□□□ -0.28
SQSTM1-209ENST00000504627 ZNF506Q5JVG8 444 aa13.31□□□□□ -0.28
SQSTM1-209ENST00000504627 C16orf54Q6UWD8 224 aa13.31□□□□□ -0.28
SQSTM1-209ENST00000504627 APRG1Q8IVJ8 170 aa13.31□□□□□ -0.28
SQSTM1-209ENST00000504627 GBGT1Q8N5D6 347 aa13.31□□□□□ -0.28
SQSTM1-209ENST00000504627 GLMPQ8WWB7 406 aa13.31□□□□□ -0.28
SQSTM1-209ENST00000504627 TXNDC17Q9BRA2 123 aa13.31□□□□□ -0.28
SQSTM1-209ENST00000504627 SMDT1Q9H4I9 107 aa13.31□□□□□ -0.28
SQSTM1-209ENST00000504627 A0A087X0K7 114 aa13.3□□□□□ -0.28
SQSTM1-209ENST00000504627 KIR2DL5BA0A0G2JN68 375 aa13.3□□□□□ -0.28
SQSTM1-209ENST00000504627 KIR2DL5BA0A0G2JPC4 375 aa13.3□□□□□ -0.28
SQSTM1-209ENST00000504627 RBFOX3A6NFN3 312 aa13.3□□□□□ -0.28
SQSTM1-209ENST00000504627 NDUFS6O75380 124 aaKnown RBP13.3□□□□□ -0.28
SQSTM1-209ENST00000504627 APOHP02749 345 aaPredicted RBP13.3□□□□□ -0.28
SQSTM1-209ENST00000504627 CD5P06127 495 aa13.3□□□□□ -0.28
SQSTM1-209ENST00000504627 GALR1P47211 349 aa13.3□□□□□ -0.28
SQSTM1-209ENST00000504627 MEOX2P50222 304 aa13.3□□□□□ -0.28
SQSTM1-209ENST00000504627 TCF24Q7RTU0 167 aa13.3□□□□□ -0.28
SQSTM1-209ENST00000504627 KIR2DL5AQ8N109 375 aa13.3□□□□□ -0.28
SQSTM1-209ENST00000504627 KIR2DL5BQ8NHK3 375 aa13.3□□□□□ -0.28
SQSTM1-209ENST00000504627 VAX2Q9UIW0 290 aa13.3□□□□□ -0.28
SQSTM1-209ENST00000504627 TP53TG1Q9Y2A0 90 aa13.3□□□□□ -0.28
SQSTM1-209ENST00000504627 A0A1W2PRE2 83 aa13.29□□□□□ -0.28
SQSTM1-209ENST00000504627 ATF4P18848 351 aaPredicted RBP13.29□□□□□ -0.28
SQSTM1-209ENST00000504627 RPL11P62913 178 aaKnown RBP13.29□□□□□ -0.28
SQSTM1-209ENST00000504627 PDE6HQ13956 83 aa13.29□□□□□ -0.28
SQSTM1-209ENST00000504627 WFDC3Q8IUB2 231 aa13.29□□□□□ -0.28
SQSTM1-209ENST00000504627 DNAH1Q9P2D7 4330 aa13.28□□□□□ -0.28
SQSTM1-209ENST00000504627 IGHV3-66A0A0C4DH42 116 aa13.28□□□□□ -0.28
SQSTM1-209ENST00000504627 A0A0J9YWU9 116 aa13.28□□□□□ -0.28
SQSTM1-209ENST00000504627 FAM74A7A6NL05 159 aa13.28□□□□□ -0.28
SQSTM1-209ENST00000504627 DNASE2O00115 360 aaPredicted RBP13.28□□□□□ -0.28
SQSTM1-209ENST00000504627 PAGE4O60829 102 aa13.28□□□□□ -0.28
SQSTM1-209ENST00000504627 NBEAP1P0C6P0 100 aa13.28□□□□□ -0.28
SQSTM1-209ENST00000504627 MEF2BQ02080 365 aaPredicted RBP13.28□□□□□ -0.28
SQSTM1-209ENST00000504627 ICAM4Q14773 271 aa13.28□□□□□ -0.28
SQSTM1-209ENST00000504627 PEA15Q15121 130 aa13.28□□□□□ -0.28
SQSTM1-209ENST00000504627 SIGLEC15Q6ZMC9 328 aa13.28□□□□□ -0.28
SQSTM1-209ENST00000504627 NKX6-2Q9C056 277 aaPredicted RBP13.28□□□□□ -0.28
SQSTM1-209ENST00000504627 EIF5A2Q9GZV4 153 aaKnown RBP13.28□□□□□ -0.28
SQSTM1-209ENST00000504627 TRBV19A0A075B6N1 114 aa13.27□□□□□ -0.29
SQSTM1-209ENST00000504627 HELTA6NFD8 242 aa13.27□□□□□ -0.29
SQSTM1-209ENST00000504627 ZNF253O75346 499 aa13.27□□□□□ -0.29
SQSTM1-209ENST00000504627 UBE2G2P60604 165 aa13.27□□□□□ -0.29
SQSTM1-209ENST00000504627 ZNF124Q15973 351 aa13.27□□□□□ -0.29
SQSTM1-209ENST00000504627 FAM90A2PQ658T7 463 aa13.27□□□□□ -0.29
SQSTM1-209ENST00000504627 SLC7A5P1Q8MH63 180 aa13.27□□□□□ -0.29
SQSTM1-209ENST00000504627 RNF183Q96D59 192 aa13.27□□□□□ -0.29
SQSTM1-209ENST00000504627 MAP6D1Q9H9H5 199 aa13.27□□□□□ -0.29
SQSTM1-209ENST00000504627 ZNF586Q9NXT0 402 aa13.27□□□□□ -0.29
SQSTM1-209ENST00000504627 YTHDF2Q9Y5A9 579 aaKnown RBP13.27□□□□□ -0.29
SQSTM1-209ENST00000504627 CXorf65A6NEN9 183 aa13.26□□□□□ -0.29
SQSTM1-209ENST00000504627 C11orf94C9JXX5 98 aa13.26□□□□□ -0.29
SQSTM1-209ENST00000504627 H3BQ15 152 aa13.26□□□□□ -0.29
SQSTM1-209ENST00000504627 BLNKQ8WV28 456 aa13.26□□□□□ -0.29
SQSTM1-209ENST00000504627 TCEAL7Q9BRU2 100 aa13.26□□□□□ -0.29
SQSTM1-209ENST00000504627 CSTL1Q9H114 145 aa13.26□□□□□ -0.29
SQSTM1-209ENST00000504627 MS4A6AQ9H2W1 248 aa13.26□□□□□ -0.29
SQSTM1-209ENST00000504627 PLECQ15149 4684 aaKnown RBP13.25□□□□□ -0.29
SQSTM1-209ENST00000504627 GGTLC3B5MD39 225 aa13.25□□□□□ -0.29
SQSTM1-209ENST00000504627 CST9LP1Q5W188 147 aa13.25□□□□□ -0.29
SQSTM1-209ENST00000504627 LYPD1Q8N2G4 141 aa13.25□□□□□ -0.29
SQSTM1-209ENST00000504627 RXFP4Q8TDU9 374 aa13.25□□□□□ -0.29
SQSTM1-209ENST00000504627 RARRES2Q99969 163 aa13.25□□□□□ -0.29
SQSTM1-209ENST00000504627 SLC50A1Q9BRV3 221 aa13.25□□□□□ -0.29
SQSTM1-209ENST00000504627 TREM1Q9NP99 234 aa13.25□□□□□ -0.29
SQSTM1-209ENST00000504627 PDE6DO43924 150 aa13.24□□□□□ -0.29
SQSTM1-209ENST00000504627 ATP5G3P48201 142 aa13.24□□□□□ -0.29
SQSTM1-209ENST00000504627 SRSF3P84103 164 aaKnown RBP13.24□□□□□ -0.29
SQSTM1-209ENST00000504627 SAMD13Q5VXD3 122 aa13.24□□□□□ -0.29
SQSTM1-209ENST00000504627 OTORQ9NRC9 128 aa13.24□□□□□ -0.29
SQSTM1-209ENST00000504627 HYDINQ4G0P3 5121 aa13.24□□□□□ -0.29
SQSTM1-209ENST00000504627 F6UZH7 168 aa13.23□□□□□ -0.29
SQSTM1-209ENST00000504627 TMEM250H0YL14 139 aa13.23□□□□□ -0.29
SQSTM1-209ENST00000504627 NDUFB4O95168 129 aa13.23□□□□□ -0.29
SQSTM1-209ENST00000504627 PSG9Q00887 426 aa13.23□□□□□ -0.29
SQSTM1-209ENST00000504627 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.23□□□□□ -0.29
SQSTM1-209ENST00000504627 Q9H3A6 140 aa13.23□□□□□ -0.29
SQSTM1-209ENST00000504627 TRAV2A0A0B4J234 112 aa13.22□□□□□ -0.29
SQSTM1-209ENST00000504627 H3BTX0 84 aa13.22□□□□□ -0.29
SQSTM1-209ENST00000504627 SLC17A3O00476 420 aa13.22□□□□□ -0.29
SQSTM1-209ENST00000504627 SRP19P09132 144 aaKnown RBP13.22□□□□□ -0.29
SQSTM1-209ENST00000504627 DEFB131AP59861 70 aa13.22□□□□□ -0.29
SQSTM1-209ENST00000504627 CCDC28AQ8IWP9 274 aa13.22□□□□□ -0.29
SQSTM1-209ENST00000504627 C11orf52Q96A22 123 aa13.22□□□□□ -0.29
SQSTM1-209ENST00000504627 C17orf77Q96MU5 243 aa13.22□□□□□ -0.29
SQSTM1-209ENST00000504627 SLC35B3Q9H1N7 401 aa13.22□□□□□ -0.29
SQSTM1-209ENST00000504627 AAMDCQ9H7C9 122 aa13.22□□□□□ -0.29
SQSTM1-209ENST00000504627 NRN1Q9NPD7 142 aa13.22□□□□□ -0.29
SQSTM1-209ENST00000504627 NUPR2A6NF83 97 aa13.21□□□□□ -0.29
SQSTM1-209ENST00000504627 SNRPCP09234 159 aaKnown RBP13.21□□□□□ -0.29
SQSTM1-209ENST00000504627 RANP62826 216 aaKnown RBP13.21□□□□□ -0.29
SQSTM1-209ENST00000504627 C5orf17Q8NAS9 161 aa13.21□□□□□ -0.29
SQSTM1-209ENST00000504627 ZNF331Q9NQX6 463 aaPredicted RBP13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 107.3 ms