RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 ZNF491Q8N8L2 437 aa12.66□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 ZC2HC1AQ96GY0 325 aa12.66□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 LIPFP07098 398 aa12.66□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 IGLL1P15814 213 aa12.66□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 FAM162BQ5T6X4 162 aa12.66□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 LINC00173Q6ZV60 143 aa12.66□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 CHCHD1Q96BP2 118 aaKnown RBP12.66□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 ASCL2Q99929 193 aa12.66□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 NDFIP1Q9BT67 221 aa12.66□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 ITPR2Q14571 2701 aa12.66□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 PET117Q6UWS5 81 aa12.65□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 BPIFA4PQ86YQ2 179 aa12.65□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 TMEM70Q9BUB7 260 aa12.65□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 NBR2O15453 112 aa12.65□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 CRXO43186 299 aaPredicted RBP12.65□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 LY6HO94772 140 aa12.65□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 PRB4P10163 310 aaPredicted RBP12.65□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 TMEM75Q8N9X5 138 aa12.65□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 OR11H6Q8NGC7 330 aa12.65□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 WFDC12Q8WWY7 111 aa12.65□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 WI2-2373I1.2A0A1W2PRP0 233 aa12.64□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 NDUFA3O95167 84 aa12.64□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 HTR1DP28221 377 aa12.64□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 PSG3Q16557 428 aa12.64□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 KLF17Q5JT82 389 aaPredicted RBP12.64□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 BCL6BQ8N143 479 aaPredicted RBP12.64□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 NPBQ8NG41 125 aa12.64□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 RNF125Q96EQ8 232 aa12.64□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 C1RLQ9NZP8 487 aa12.64□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 DPM3Q9P2X0 92 aa12.64□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 HILPDAQ9Y5L2 63 aa12.64□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 J3QKU1 62 aa12.64□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 CHEK1O14757 476 aa12.64□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 HLA-DRB1P01911 266 aa12.64□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 CRIP1P50238 77 aa12.64□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 FBXL19-AS1Q494R0 122 aa12.64□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 OR4F17Q8NGA8 305 aa12.64□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 ZNF414Q96IQ9 312 aa12.64□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 PSG8Q9UQ74 426 aa12.64□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 APCP25054 2843 aa12.63□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 IL4P05112 153 aa12.63□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 RIPPLY3P57055 190 aa12.63□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 LYPD1Q8N2G4 141 aa12.63□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 S4R3C0 116 aa12.63□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 A0A1B0GV72 72 aa12.62□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 GAGE12BA1L429 117 aa12.62□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 ZNF138P52744 262 aa12.62□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 KLRD1Q13241 179 aa12.62□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 TMEM190Q8WZ59 177 aa12.62□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 FLNBO75369 2602 aaKnown RBP12.62□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 SYS1-DBNDD2H3BUS1 97 aa12.62□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 ARMS2P0C7Q2 107 aa12.62□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 FCGR2BP31994 310 aaPredicted RBP12.62□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 GATD1Q8NB37 220 aa12.62□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 FANCD2OSQ96PS1 177 aa12.62□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.61□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 SCGB2A2Q13296 93 aa12.61□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 Q5PR19 223 aa12.61□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 CELSR1Q9NYQ6 3014 aa12.61□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 A0A1B0GUT8 65 aa12.61□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 A0A1W2PPR1 153 aa12.61□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 OR4C46A6NHA9 309 aa12.61□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 ODF3BA8MYP8 253 aa12.61□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 F8W735 103 aaPredicted RBP12.61□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 G3V4G9 280 aa12.61□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 M0R3E3 92 aa12.61□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 LEPROTL1O95214 131 aa12.61□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 SAMD13Q5VXD3 122 aa12.61□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 IGLV11-55A0A075B6I3 123 aa12.6□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 C5orf64Q2M2E5 130 aa12.6□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 TMUB1Q9BVT8 246 aa12.6□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 TAX1BP3O14907 124 aa12.59□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 C8orf49Q96NF6 230 aa12.59□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 RAB1BQ9H0U4 201 aa12.59□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 ZNF469Q96JG9 3925 aaPredicted RBP12.59□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 A0A1W2PRD5 423 aa12.58□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 A0A1W2PRF3 423 aa12.58□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 A0A1W2PRM7 423 aa12.58□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 NPIPB5A8MRT5 1133 aa12.58□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 K7EQM0 130 aa12.58□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 CEACAM3P40198 252 aa12.58□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 NDPQ00604 133 aa12.58□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 RIGQ13278 110 aa12.58□□□□□ -0.39
MSH5-SAPCD1-208ENST00000498473 NOTCH2Q04721 2471 aa12.58□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 M0R1W7 72 aa12.58□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 GNG7O60262 68 aa12.58□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 OR5AL1P0C617 328 aa12.58□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 PRTN3P24158 256 aa12.58□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 S100A7AQ86SG5 101 aa12.58□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 DYNAPQ8N1N2 210 aa12.58□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 NEU4Q8WWR8 484 aaPredicted RBP12.58□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 ZNF48Q96MX3 618 aaPredicted RBP12.58□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 TP73-AS1Q9UF72 201 aa12.58□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 hDV102S1A0JD36 115 aa12.57□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 MFAP4P55083 255 aa12.57□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 ANKRD17O75179 2603 aaKnown RBP12.57□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 PDE6HQ13956 83 aa12.57□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 HES1Q14469 280 aa12.57□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 ZNF562Q6V9R5 426 aa12.57□□□□□ -0.4
MSH5-SAPCD1-208ENST00000498473 TTC9CQ8N5M4 171 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 99.3 ms