RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 ZNF329Q86UD4 541 aa9.46□□□□□ -0.9
HDAC6-230ENST00000488543 NEU1Q99519 415 aa9.46□□□□□ -0.9
HDAC6-230ENST00000488543 VAMP8Q9BV40 100 aa9.46□□□□□ -0.9
HDAC6-230ENST00000488543 OSTCQ9NRP0 149 aa9.46□□□□□ -0.9
HDAC6-230ENST00000488543 LY96Q9Y6Y9 160 aa9.46□□□□□ -0.9
HDAC6-230ENST00000488543 TRBV9A0A0B4J1U6 114 aa9.45□□□□□ -0.9
HDAC6-230ENST00000488543 IGHV3-23P01764 117 aa9.45□□□□□ -0.9
HDAC6-230ENST00000488543 TFPI2P48307 235 aa9.45□□□□□ -0.9
HDAC6-230ENST00000488543 PAFAH1B2P68402 229 aa9.45□□□□□ -0.9
HDAC6-230ENST00000488543 LCN12Q6JVE5 192 aa9.45□□□□□ -0.9
HDAC6-230ENST00000488543 ZNF414Q96IQ9 312 aa9.45□□□□□ -0.9
HDAC6-230ENST00000488543 TMEM68Q96MH6 324 aa9.45□□□□□ -0.9
HDAC6-230ENST00000488543 THYN1Q9P016 225 aa9.45□□□□□ -0.9
HDAC6-230ENST00000488543 MRPL27Q9P0M9 148 aaKnown RBP9.45□□□□□ -0.9
HDAC6-230ENST00000488543 HIVEP2P31629 2446 aa9.45□□□□□ -0.9
HDAC6-230ENST00000488543 TRAV30A0A087WSZ9 112 aa9.45□□□□□ -0.9
HDAC6-230ENST00000488543 WI2-2373I1.2A0A1W2PRP0 233 aa9.45□□□□□ -0.9
HDAC6-230ENST00000488543 DIRC3C9JPN6 131 aa9.45□□□□□ -0.9
HDAC6-230ENST00000488543 CAMPP49913 170 aa9.45□□□□□ -0.9
HDAC6-230ENST00000488543 Q0VG73 95 aa9.45□□□□□ -0.9
HDAC6-230ENST00000488543 Q6YL49 198 aa9.45□□□□□ -0.9
HDAC6-230ENST00000488543 C9orf139Q6ZV77 190 aa9.45□□□□□ -0.9
HDAC6-230ENST00000488543 HIGD1AQ9Y241 93 aa9.45□□□□□ -0.9
HDAC6-230ENST00000488543 TRAV9-1A0A075B6T8 112 aa9.44□□□□□ -0.9
HDAC6-230ENST00000488543 A0A1W2PRE2 83 aa9.44□□□□□ -0.9
HDAC6-230ENST00000488543 SMIM27A0A1W2PRY6 76 aa9.44□□□□□ -0.9
HDAC6-230ENST00000488543 M0QZ24 198 aa9.44□□□□□ -0.9
HDAC6-230ENST00000488543 PEX7O00628 323 aa9.44□□□□□ -0.9
HDAC6-230ENST00000488543 HOXA3O43365 443 aaPredicted RBP9.44□□□□□ -0.9
HDAC6-230ENST00000488543 GNG7O60262 68 aa9.44□□□□□ -0.9
HDAC6-230ENST00000488543 ESDP10768 282 aa9.44□□□□□ -0.9
HDAC6-230ENST00000488543 ZNF25P17030 456 aaPredicted RBP9.44□□□□□ -0.9
HDAC6-230ENST00000488543 FCGR2BP31994 310 aaPredicted RBP9.44□□□□□ -0.9
HDAC6-230ENST00000488543 Q56UQ5 140 aa9.44□□□□□ -0.9
HDAC6-230ENST00000488543 ZNF491Q8N8L2 437 aa9.44□□□□□ -0.9
HDAC6-230ENST00000488543 GP9P14770 177 aa9.44□□□□□ -0.9
HDAC6-230ENST00000488543 PCP4P48539 62 aa9.44□□□□□ -0.9
HDAC6-230ENST00000488543 NIT1Q86X76 327 aa9.44□□□□□ -0.9
HDAC6-230ENST00000488543 NUDT10Q8NFP7 164 aa9.44□□□□□ -0.9
HDAC6-230ENST00000488543 NUDT11Q96G61 164 aa9.44□□□□□ -0.9
HDAC6-230ENST00000488543 KCNS1Q96KK3 526 aa9.44□□□□□ -0.9
HDAC6-230ENST00000488543 SPXQ9BT56 116 aa9.44□□□□□ -0.9
HDAC6-230ENST00000488543 SLC25A39Q9BZJ4 359 aaPredicted RBP9.44□□□□□ -0.9
HDAC6-230ENST00000488543 TP73-AS1Q9UF72 201 aa9.44□□□□□ -0.9
HDAC6-230ENST00000488543 APCSP02743 223 aa9.43□□□□□ -0.9
HDAC6-230ENST00000488543 RHOGP84095 191 aa9.43□□□□□ -0.9
HDAC6-230ENST00000488543 LBHQ53QV2 105 aaPredicted RBP9.43□□□□□ -0.9
HDAC6-230ENST00000488543 LINC00322Q6ZN03 302 aaPredicted RBP9.43□□□□□ -0.9
HDAC6-230ENST00000488543 TCF24Q7RTU0 167 aa9.43□□□□□ -0.9
HDAC6-230ENST00000488543 NUP35Q8NFH5 326 aa9.43□□□□□ -0.9
HDAC6-230ENST00000488543 ZNF502Q8TBZ5 544 aa9.43□□□□□ -0.9
HDAC6-230ENST00000488543 TSKUQ8WUA8 353 aa9.43□□□□□ -0.9
HDAC6-230ENST00000488543 TMEM160Q9NX00 188 aa9.43□□□□□ -0.9
HDAC6-230ENST00000488543 TRAV41A0A0B4J266 112 aa9.43□□□□□ -0.9
HDAC6-230ENST00000488543 CYSRT1A8MQ03 144 aa9.43□□□□□ -0.9
HDAC6-230ENST00000488543 LY6G6DO95868 133 aa9.43□□□□□ -0.9
HDAC6-230ENST00000488543 CTSGP08311 255 aa9.43□□□□□ -0.9
HDAC6-230ENST00000488543 C3orf79P0CE67 100 aa9.43□□□□□ -0.9
HDAC6-230ENST00000488543 PMCHL1Q16048 86 aa9.43□□□□□ -0.9
HDAC6-230ENST00000488543 TMEM183BQ1AE95 376 aa9.43□□□□□ -0.9
HDAC6-230ENST00000488543 C15orf32Q32M92 178 aa9.43□□□□□ -0.9
HDAC6-230ENST00000488543 STXBP6Q8NFX7 210 aa9.43□□□□□ -0.9
HDAC6-230ENST00000488543 RNF125Q96EQ8 232 aa9.43□□□□□ -0.9
HDAC6-230ENST00000488543 MIEN1Q9BRT3 115 aa9.43□□□□□ -0.9
HDAC6-230ENST00000488543 ZNF586Q9NXT0 402 aa9.43□□□□□ -0.9
HDAC6-230ENST00000488543 IZUMO1RA6ND01 250 aa9.42□□□□□ -0.9
HDAC6-230ENST00000488543 OR2T8A6NH00 312 aa9.42□□□□□ -0.9
HDAC6-230ENST00000488543 H3BRN7 92 aa9.42□□□□□ -0.9
HDAC6-230ENST00000488543 IGHG2P01859 326 aa9.42□□□□□ -0.9
HDAC6-230ENST00000488543 IGF1P05019 195 aa9.42□□□□□ -0.9
HDAC6-230ENST00000488543 SLC25A5P05141 298 aaKnown RBP9.42□□□□□ -0.9
HDAC6-230ENST00000488543 MYCNOSP40205 109 aa9.42□□□□□ -0.9
HDAC6-230ENST00000488543 COTL1Q14019 142 aa9.42□□□□□ -0.9
HDAC6-230ENST00000488543 ZNF124Q15973 351 aa9.42□□□□□ -0.9
HDAC6-230ENST00000488543 SHANK2-AS3Q9BTD1 123 aa9.42□□□□□ -0.9
HDAC6-230ENST00000488543 CHRDL1Q9BU40 450 aa9.42□□□□□ -0.9
HDAC6-230ENST00000488543 IL4P05112 153 aa9.42□□□□□ -0.9
HDAC6-230ENST00000488543 SPATA45Q537H7 98 aa9.42□□□□□ -0.9
HDAC6-230ENST00000488543 RNF152Q8N8N0 203 aa9.42□□□□□ -0.9
HDAC6-230ENST00000488543 C18orf32Q8TCD1 76 aa9.42□□□□□ -0.9
HDAC6-230ENST00000488543 C20orf144Q9BQM9 153 aa9.42□□□□□ -0.9
HDAC6-230ENST00000488543 ZNF331Q9NQX6 463 aaPredicted RBP9.42□□□□□ -0.9
HDAC6-230ENST00000488543 TRAV8-1A0A0A6YYK1 113 aa9.41□□□□□ -0.9
HDAC6-230ENST00000488543 PGPA6NDG6 321 aa9.41□□□□□ -0.9
HDAC6-230ENST00000488543 M0QZK8 103 aa9.41□□□□□ -0.9
HDAC6-230ENST00000488543 ZNF324O75467 553 aaPredicted RBP9.41□□□□□ -0.9
HDAC6-230ENST00000488543 CCDC140Q96MF4 163 aa9.41□□□□□ -0.9
HDAC6-230ENST00000488543 TMEM14CQ9P0S9 112 aa9.41□□□□□ -0.9
HDAC6-230ENST00000488543 HIGD1CA8MV81 97 aa9.41□□□□□ -0.9
HDAC6-230ENST00000488543 RNASEKQ6P5S7 137 aaKnown RBP9.41□□□□□ -0.9
HDAC6-230ENST00000488543 HLA-DQA1P01909 254 aa9.4□□□□□ -0.9
HDAC6-230ENST00000488543 MT-ND6P03923 174 aa9.4□□□□□ -0.9
HDAC6-230ENST00000488543 NPSP0C0P6 89 aa9.4□□□□□ -0.9
HDAC6-230ENST00000488543 FOXA3P55318 350 aaPredicted RBP9.4□□□□□ -0.9
HDAC6-230ENST00000488543 Q6ZVH6 145 aa9.4□□□□□ -0.9
HDAC6-230ENST00000488543 SPATA12Q7Z6I5 190 aa9.4□□□□□ -0.9
HDAC6-230ENST00000488543 OR2D3Q8NGH3 330 aa9.4□□□□□ -0.9
HDAC6-230ENST00000488543 VPREB3Q9UKI3 123 aa9.4□□□□□ -0.9
HDAC6-230ENST00000488543 MRPS12O15235 138 aaKnown RBP9.4□□□□□ -0.91
HDAC6-230ENST00000488543 NBEAP1P0C6P0 100 aa9.4□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms