RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 DUX3Q96PT4 197 aa10.76□□□□□ -0.69
USP40-208ENST00000450966 TRGV9Q99603 122 aa10.76□□□□□ -0.69
USP40-208ENST00000450966 IGHV3OR16-13A0A075B7E8 117 aa10.76□□□□□ -0.69
USP40-208ENST00000450966 IGHV3-74A0A0B4J1X5 117 aa10.76□□□□□ -0.69
USP40-208ENST00000450966 PAX4O43316 350 aa10.76□□□□□ -0.69
USP40-208ENST00000450966 CR1LQ2VPA4 569 aa10.76□□□□□ -0.69
USP40-208ENST00000450966 IL17RELQ6ZVW7 336 aa10.76□□□□□ -0.69
USP40-208ENST00000450966 MYOD1P15172 320 aa10.76□□□□□ -0.69
USP40-208ENST00000450966 HAMPP81172 84 aa10.76□□□□□ -0.69
USP40-208ENST00000450966 C5orf24Q7Z6I8 188 aa10.76□□□□□ -0.69
USP40-208ENST00000450966 FAM216BQ8N7L0 139 aa10.76□□□□□ -0.69
USP40-208ENST00000450966 NDUFA7O95182 113 aa10.75□□□□□ -0.69
USP40-208ENST00000450966 RNASE4P34096 147 aaKnown RBP10.75□□□□□ -0.69
USP40-208ENST00000450966 LINC00643Q86TS7 51 aa10.75□□□□□ -0.69
USP40-208ENST00000450966 A0A0G2JRQ6 117 aa10.75□□□□□ -0.69
USP40-208ENST00000450966 CHCHD5Q9BSY4 110 aa10.75□□□□□ -0.69
USP40-208ENST00000450966 SPATA12Q7Z6I5 190 aa10.75□□□□□ -0.69
USP40-208ENST00000450966 H3BT86 120 aa10.75□□□□□ -0.69
USP40-208ENST00000450966 MRPL51Q4U2R6 128 aaKnown RBP10.75□□□□□ -0.69
USP40-208ENST00000450966 A4D1N5 150 aa10.74□□□□□ -0.69
USP40-208ENST00000450966 B4DSR2 109 aa10.74□□□□□ -0.69
USP40-208ENST00000450966 C2orf66Q6UXQ4 117 aa10.74□□□□□ -0.69
USP40-208ENST00000450966 DENND4AQ7Z401 1863 aa10.74□□□□□ -0.69
USP40-208ENST00000450966 OOSP1A8MZH6 123 aa10.74□□□□□ -0.69
USP40-208ENST00000450966 IGHG3P01860 377 aa10.74□□□□□ -0.69
USP40-208ENST00000450966 Q71RC1 249 aaPredicted RBP10.74□□□□□ -0.69
USP40-208ENST00000450966 ZC2HC1AQ96GY0 325 aa10.74□□□□□ -0.69
USP40-208ENST00000450966 IGHV3-23P01764 117 aa10.74□□□□□ -0.69
USP40-208ENST00000450966 EXOC3-AS1Q8N2X6 119 aa10.74□□□□□ -0.69
USP40-208ENST00000450966 MDS2Q8NDY4 140 aa10.74□□□□□ -0.69
USP40-208ENST00000450966 A0A0U1RQV1 116 aa10.73□□□□□ -0.69
USP40-208ENST00000450966 IGFL3Q6UXB1 125 aa10.73□□□□□ -0.69
USP40-208ENST00000450966 TMEM75Q8N9X5 138 aa10.73□□□□□ -0.69
USP40-208ENST00000450966 TRBV10-2A0A0K0K1G8 114 aa10.73□□□□□ -0.69
USP40-208ENST00000450966 MBD3L4A6NDZ8 208 aaPredicted RBP10.73□□□□□ -0.69
USP40-208ENST00000450966 MBD3L3A6NE82 208 aaPredicted RBP10.73□□□□□ -0.69
USP40-208ENST00000450966 MBD3L5A6NJ08 208 aaPredicted RBP10.73□□□□□ -0.69
USP40-208ENST00000450966 CD7P09564 240 aa10.73□□□□□ -0.69
USP40-208ENST00000450966 GATA3P23771 443 aa10.73□□□□□ -0.69
USP40-208ENST00000450966 Q6ZRM9 215 aa10.73□□□□□ -0.69
USP40-208ENST00000450966 MBD3L2Q8NHZ7 208 aaPredicted RBP10.73□□□□□ -0.69
USP40-208ENST00000450966 hADV29S1A0JD25 119 aa10.73□□□□□ -0.69
USP40-208ENST00000450966 CELA3BP08861 270 aa10.73□□□□□ -0.69
USP40-208ENST00000450966 MALP21145 153 aa10.73□□□□□ -0.69
USP40-208ENST00000450966 PSG7Q13046 419 aa10.73□□□□□ -0.69
USP40-208ENST00000450966 TMEM42Q69YG0 159 aa10.73□□□□□ -0.69
USP40-208ENST00000450966 LINC01587Q99440 93 aa10.73□□□□□ -0.69
USP40-208ENST00000450966 IGHV3-49A0A0A0MS15 119 aa10.73□□□□□ -0.69
USP40-208ENST00000450966 WIPF3A6NGB9 483 aa10.73□□□□□ -0.69
USP40-208ENST00000450966 K7EN84 100 aa10.73□□□□□ -0.69
USP40-208ENST00000450966 SAA2P0DJI9 122 aaPredicted RBP10.73□□□□□ -0.69
USP40-208ENST00000450966 CLEC19AQ6UXS0 136 aa10.72□□□□□ -0.69
USP40-208ENST00000450966 C8orf31Q8N9H6 132 aa10.72□□□□□ -0.69
USP40-208ENST00000450966 SPRR3Q9UBC9 169 aa10.72□□□□□ -0.69
USP40-208ENST00000450966 COLCA1Q6ZS62 124 aa10.72□□□□□ -0.69
USP40-208ENST00000450966 TMEM213A2RRL7 107 aa10.72□□□□□ -0.69
USP40-208ENST00000450966 PSMB8P28062 276 aa10.72□□□□□ -0.69
USP40-208ENST00000450966 JPT2Q9H910 190 aa10.72□□□□□ -0.69
USP40-208ENST00000450966 SCN2AQ99250 2005 aa10.72□□□□□ -0.69
USP40-208ENST00000450966 TRGV2A0A075B6R0 118 aa10.72□□□□□ -0.69
USP40-208ENST00000450966 IGHV3-66A0A0C4DH42 116 aa10.72□□□□□ -0.69
USP40-208ENST00000450966 IGKV1-12A0A0C4DH73 117 aa10.72□□□□□ -0.69
USP40-208ENST00000450966 A0A1W2PRX2 142 aa10.72□□□□□ -0.69
USP40-208ENST00000450966 NDUFC2-KCTD14E9PQ53 114 aa10.72□□□□□ -0.69
USP40-208ENST00000450966 IGKV1D-12P01611 117 aa10.72□□□□□ -0.69
USP40-208ENST00000450966 BAALC-AS2P0C853 105 aa10.72□□□□□ -0.69
USP40-208ENST00000450966 FAM201AQ5SY85 155 aa10.72□□□□□ -0.69
USP40-208ENST00000450966 MGAMO43451 1857 aa10.71□□□□□ -0.69
USP40-208ENST00000450966 FAM236DA0A1B0GTK5 79 aa10.71□□□□□ -0.69
USP40-208ENST00000450966 F6UB75 175 aa10.71□□□□□ -0.69
USP40-208ENST00000450966 J3QQQ9 107 aa10.71□□□□□ -0.69
USP40-208ENST00000450966 FAM236CP0DP71 79 aa10.71□□□□□ -0.69
USP40-208ENST00000450966 RNASE2P10153 161 aaKnown RBP10.71□□□□□ -0.69
USP40-208ENST00000450966 ANKRD36A6QL64 1941 aa10.71□□□□□ -0.69
USP40-208ENST00000450966 PMS2P5A8MQ11 134 aa10.71□□□□□ -0.69
USP40-208ENST00000450966 NBR2O15453 112 aa10.71□□□□□ -0.69
USP40-208ENST00000450966 HTN3P15516 51 aa10.71□□□□□ -0.69
USP40-208ENST00000450966 CD24P25063 80 aa10.71□□□□□ -0.69
USP40-208ENST00000450966 TET1Q8NFU7 2136 aa10.71□□□□□ -0.69
USP40-208ENST00000450966 CXCL5P42830 114 aa10.71□□□□□ -0.7
USP40-208ENST00000450966 AHCTF1Q8WYP5 2266 aa10.71□□□□□ -0.7
USP40-208ENST00000450966 TGFBR3LH3BV60 316 aa10.7□□□□□ -0.7
USP40-208ENST00000450966 CRYGSP22914 178 aa10.7□□□□□ -0.7
USP40-208ENST00000450966 PRSS33Q8NF86 280 aa10.7□□□□□ -0.7
USP40-208ENST00000450966 CACNA1DQ01668 2161 aa10.7□□□□□ -0.7
USP40-208ENST00000450966 IGKV2-40A0A087WW87 121 aaPredicted RBP10.7□□□□□ -0.7
USP40-208ENST00000450966 IGKV2D-40P01614 121 aaPredicted RBP10.7□□□□□ -0.7
USP40-208ENST00000450966 ZNF493Q6ZR52 646 aa10.7□□□□□ -0.7
USP40-208ENST00000450966 PRIMA1Q86XR5 153 aa10.7□□□□□ -0.7
USP40-208ENST00000450966 CTRLP40313 264 aa10.7□□□□□ -0.7
USP40-208ENST00000450966 DAD1P61803 113 aa10.7□□□□□ -0.7
USP40-208ENST00000450966 S4R3C0 116 aa10.7□□□□□ -0.7
USP40-208ENST00000450966 LCTP09848 1927 aa10.7□□□□□ -0.7
USP40-208ENST00000450966 IGF2-ASQ6U949 168 aa10.7□□□□□ -0.7
USP40-208ENST00000450966 STHQ8IWL8 128 aa10.7□□□□□ -0.7
USP40-208ENST00000450966 OVOL1O14753 267 aa10.69□□□□□ -0.7
USP40-208ENST00000450966 TRAV13-2A0A0B4J235 113 aa10.69□□□□□ -0.7
USP40-208ENST00000450966 DUSP14O95147 198 aaKnown RBP10.69□□□□□ -0.7
USP40-208ENST00000450966 PIP4P1Q86T03 277 aa10.69□□□□□ -0.7
USP40-208ENST00000450966 C3orf36Q3SXR2 165 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms