RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 SIGLEC8Q9NYZ4 499 aa9.08□□□□□ -0.96
PTPRF-208ENST00000437607 A0A1W2PRE2 83 aa9.07□□□□□ -0.96
PTPRF-208ENST00000437607 RAB19A4D1S5 217 aa9.07□□□□□ -0.96
PTPRF-208ENST00000437607 RBFOX3A6NFN3 312 aa9.07□□□□□ -0.96
PTPRF-208ENST00000437607 FAM74A7A6NL05 159 aa9.07□□□□□ -0.96
PTPRF-208ENST00000437607 C11orf94C9JXX5 98 aa9.07□□□□□ -0.96
PTPRF-208ENST00000437607 SLC17A3O00476 420 aa9.07□□□□□ -0.96
PTPRF-208ENST00000437607 PAFAH1B2P68402 229 aa9.07□□□□□ -0.96
PTPRF-208ENST00000437607 PSG9Q00887 426 aa9.07□□□□□ -0.96
PTPRF-208ENST00000437607 MEF2BQ02080 365 aaPredicted RBP9.07□□□□□ -0.96
PTPRF-208ENST00000437607 PMS2P11Q13670 270 aa9.07□□□□□ -0.96
PTPRF-208ENST00000437607 ZNF506Q5JVG8 444 aa9.07□□□□□ -0.96
PTPRF-208ENST00000437607 RBPMS2Q6ZRY4 209 aaKnown RBP9.07□□□□□ -0.96
PTPRF-208ENST00000437607 SUN5Q8TC36 379 aa9.07□□□□□ -0.96
PTPRF-208ENST00000437607 SPATA25Q9BR10 227 aa9.07□□□□□ -0.96
PTPRF-208ENST00000437607 TXNDC17Q9BRA2 123 aa9.07□□□□□ -0.96
PTPRF-208ENST00000437607 NKX6-2Q9C056 277 aaPredicted RBP9.07□□□□□ -0.96
PTPRF-208ENST00000437607 Q9H3A6 140 aa9.07□□□□□ -0.96
PTPRF-208ENST00000437607 VAX2Q9UIW0 290 aa9.07□□□□□ -0.96
PTPRF-208ENST00000437607 YTHDF2Q9Y5A9 579 aaKnown RBP9.07□□□□□ -0.96
PTPRF-208ENST00000437607 SELENOKQ9Y6D0 94 aa9.07□□□□□ -0.96
PTPRF-208ENST00000437607 GGTLC3B5MD39 225 aa9.06□□□□□ -0.96
PTPRF-208ENST00000437607 DNASE2O00115 360 aaPredicted RBP9.06□□□□□ -0.96
PTPRF-208ENST00000437607 ATP5G3P48201 142 aa9.06□□□□□ -0.96
PTPRF-208ENST00000437607 RANP62826 216 aaKnown RBP9.06□□□□□ -0.96
PTPRF-208ENST00000437607 PEA15Q15121 130 aa9.06□□□□□ -0.96
PTPRF-208ENST00000437607 LYPD1Q8N2G4 141 aa9.06□□□□□ -0.96
PTPRF-208ENST00000437607 CMTM2Q8TAZ6 248 aa9.06□□□□□ -0.96
PTPRF-208ENST00000437607 RXFP4Q8TDU9 374 aa9.06□□□□□ -0.96
PTPRF-208ENST00000437607 C16orf92Q96LL3 132 aa9.06□□□□□ -0.96
PTPRF-208ENST00000437607 TREM1Q9NP99 234 aa9.06□□□□□ -0.96
PTPRF-208ENST00000437607 OTORQ9NRC9 128 aa9.06□□□□□ -0.96
PTPRF-208ENST00000437607 VPS13DQ5THJ4 4388 aa9.05□□□□□ -0.96
PTPRF-208ENST00000437607 TRAV25A0A0B4J276 109 aa9.05□□□□□ -0.96
PTPRF-208ENST00000437607 IZUMO1RA6ND01 250 aa9.05□□□□□ -0.96
PTPRF-208ENST00000437607 F6UZH7 168 aa9.05□□□□□ -0.96
PTPRF-208ENST00000437607 SLC25A5P05141 298 aaKnown RBP9.05□□□□□ -0.96
PTPRF-208ENST00000437607 ID1P41134 155 aa9.05□□□□□ -0.96
PTPRF-208ENST00000437607 TFPI2P48307 235 aa9.05□□□□□ -0.96
PTPRF-208ENST00000437607 ICAM4Q14773 271 aa9.05□□□□□ -0.96
PTPRF-208ENST00000437607 LCN12Q6JVE5 192 aa9.05□□□□□ -0.96
PTPRF-208ENST00000437607 UQCC3Q6UW78 93 aa9.05□□□□□ -0.96
PTPRF-208ENST00000437607 TMEM61Q8N0U2 210 aa9.05□□□□□ -0.96
PTPRF-208ENST00000437607 GBGT1Q8N5D6 347 aa9.05□□□□□ -0.96
PTPRF-208ENST00000437607 C5orf17Q8NAS9 161 aa9.05□□□□□ -0.96
PTPRF-208ENST00000437607 OR2K2Q8NGT1 345 aa9.05□□□□□ -0.96
PTPRF-208ENST00000437607 C17orf77Q96MU5 243 aa9.05□□□□□ -0.96
PTPRF-208ENST00000437607 TCEAL7Q9BRU2 100 aa9.05□□□□□ -0.96
PTPRF-208ENST00000437607 RETNQ9HD89 108 aa9.05□□□□□ -0.96
PTPRF-208ENST00000437607 ZNF331Q9NQX6 463 aaPredicted RBP9.05□□□□□ -0.96
PTPRF-208ENST00000437607 CLEC5AQ9NY25 188 aa9.05□□□□□ -0.96
PTPRF-208ENST00000437607 RPH3ALQ9UNE2 315 aa9.05□□□□□ -0.96
PTPRF-208ENST00000437607 TRAV2A0A0B4J234 112 aa9.04□□□□□ -0.96
PTPRF-208ENST00000437607 ISLRO14498 428 aa9.04□□□□□ -0.96
PTPRF-208ENST00000437607 TSPAN4O14817 238 aa9.04□□□□□ -0.96
PTPRF-208ENST00000437607 PDE6DO43924 150 aa9.04□□□□□ -0.96
PTPRF-208ENST00000437607 NDUFB4O95168 129 aa9.04□□□□□ -0.96
PTPRF-208ENST00000437607 CSN1S1P47710 185 aa9.04□□□□□ -0.96
PTPRF-208ENST00000437607 SNRPD3P62318 126 aaKnown RBP9.04□□□□□ -0.96
PTPRF-208ENST00000437607 DEFB114Q30KQ6 69 aa9.04□□□□□ -0.96
PTPRF-208ENST00000437607 CD300EQ496F6 205 aaPredicted RBP9.04□□□□□ -0.96
PTPRF-208ENST00000437607 FAM90A2PQ658T7 463 aa9.04□□□□□ -0.96
PTPRF-208ENST00000437607 WFDC3Q8IUB2 231 aa9.04□□□□□ -0.96
PTPRF-208ENST00000437607 EXOC3-AS1Q8N2X6 119 aa9.04□□□□□ -0.96
PTPRF-208ENST00000437607 SPAG8Q99932 426 aaPredicted RBP9.04□□□□□ -0.96
PTPRF-208ENST00000437607 RARRES2Q99969 163 aa9.04□□□□□ -0.96
PTPRF-208ENST00000437607 MS4A6AQ9H2W1 248 aa9.04□□□□□ -0.96
PTPRF-208ENST00000437607 PRELID1Q9Y255 219 aa9.04□□□□□ -0.96
PTPRF-208ENST00000437607 DNAH6Q9C0G6 4158 aa9.04□□□□□ -0.96
PTPRF-208ENST00000437607 HECTD4Q9Y4D8 3996 aa9.04□□□□□ -0.96
PTPRF-208ENST00000437607 SCO2A0A1W2PP80 73 aa9.03□□□□□ -0.96
PTPRF-208ENST00000437607 PGPA6NDG6 321 aa9.03□□□□□ -0.96
PTPRF-208ENST00000437607 OR4C46A6NHA9 309 aa9.03□□□□□ -0.96
PTPRF-208ENST00000437607 SOCS3O14543 225 aa9.03□□□□□ -0.96
PTPRF-208ENST00000437607 AKR1C3P42330 323 aa9.03□□□□□ -0.96
PTPRF-208ENST00000437607 CEBPGP53567 150 aa9.03□□□□□ -0.96
PTPRF-208ENST00000437607 SUMO1P63165 101 aaKnown RBP9.03□□□□□ -0.96
PTPRF-208ENST00000437607 GUCA2BQ16661 112 aa9.03□□□□□ -0.96
PTPRF-208ENST00000437607 LINC00322Q6ZN03 302 aaPredicted RBP9.03□□□□□ -0.96
PTPRF-208ENST00000437607 ZNF738Q8NE65 137 aa9.03□□□□□ -0.96
PTPRF-208ENST00000437607 MRPL53Q96EL3 112 aaKnown RBP9.03□□□□□ -0.96
PTPRF-208ENST00000437607 SMDT1Q9H4I9 107 aa9.03□□□□□ -0.96
PTPRF-208ENST00000437607 TMEM250H0YL14 139 aa9.02□□□□□ -0.97
PTPRF-208ENST00000437607 K7EQG2 157 aa9.02□□□□□ -0.97
PTPRF-208ENST00000437607 K7EQM0 130 aa9.02□□□□□ -0.97
PTPRF-208ENST00000437607 PEX7O00628 323 aa9.02□□□□□ -0.97
PTPRF-208ENST00000437607 NDUFS6O75380 124 aaKnown RBP9.02□□□□□ -0.97
PTPRF-208ENST00000437607 CD81P60033 236 aa9.02□□□□□ -0.97
PTPRF-208ENST00000437607 GNG5P63218 68 aa9.02□□□□□ -0.97
PTPRF-208ENST00000437607 EIF4E3Q8N5X7 224 aaKnown RBP9.02□□□□□ -0.97
PTPRF-208ENST00000437607 RNF182Q8N6D2 247 aa9.02□□□□□ -0.97
PTPRF-208ENST00000437607 DCANP1Q8TF63 244 aa9.02□□□□□ -0.97
PTPRF-208ENST00000437607 FAM110AQ9BQ89 295 aa9.02□□□□□ -0.97
PTPRF-208ENST00000437607 ATG101Q9BSB4 218 aa9.02□□□□□ -0.97
PTPRF-208ENST00000437607 SERTM2A0A1B0GWG4 89 aa9.01□□□□□ -0.97
PTPRF-208ENST00000437607 M0R3E3 92 aa9.01□□□□□ -0.97
PTPRF-208ENST00000437607 ZNF688P0C7X2 276 aa9.01□□□□□ -0.97
PTPRF-208ENST00000437607 CNN1P51911 297 aaKnown RBP9.01□□□□□ -0.97
PTPRF-208ENST00000437607 SRSF3P84103 164 aaKnown RBP9.01□□□□□ -0.97
PTPRF-208ENST00000437607 CYB561D1Q8N8Q1 229 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms