RNA–Protein interactions for RNA: ENST00000392770.6

SCN3B-202, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN3B, Length 6,061 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-202ENST00000392770 VWC2Q2TAL6 325 aa13.16□□□□□ -0.3
SCN3B-202ENST00000392770 C10orf91Q5T1B1 145 aa13.16□□□□□ -0.3
SCN3B-202ENST00000392770 C1orf194Q5T5A4 169 aa13.16□□□□□ -0.3
SCN3B-202ENST00000392770 FXYD5Q96DB9 178 aa13.16□□□□□ -0.3
SCN3B-202ENST00000392770 DEFB131AP59861 70 aa13.15□□□□□ -0.3
SCN3B-202ENST00000392770 AMN1Q8IY45 258 aa13.15□□□□□ -0.3
SCN3B-202ENST00000392770 UBE2E2Q96LR5 201 aa13.15□□□□□ -0.3
SCN3B-202ENST00000392770 IGHV4-61A0A0C4DH41 118 aa13.15□□□□□ -0.3
SCN3B-202ENST00000392770 GUSBP1Q15486 140 aa13.15□□□□□ -0.3
SCN3B-202ENST00000392770 TOMM7Q9P0U1 55 aa13.15□□□□□ -0.3
SCN3B-202ENST00000392770 TRGV1A0A0A0MS02 117 aa13.15□□□□□ -0.3
SCN3B-202ENST00000392770 PRR20EP86478 221 aa13.15□□□□□ -0.3
SCN3B-202ENST00000392770 PRR20CP86479 221 aa13.15□□□□□ -0.3
SCN3B-202ENST00000392770 PRR20DP86480 221 aa13.15□□□□□ -0.3
SCN3B-202ENST00000392770 PRR20BP86481 221 aa13.15□□□□□ -0.3
SCN3B-202ENST00000392770 PRR20AP86496 221 aa13.15□□□□□ -0.3
SCN3B-202ENST00000392770 IGHV4-39P01824 125 aa13.15□□□□□ -0.3
SCN3B-202ENST00000392770 ARMS2P0C7Q2 107 aa13.14□□□□□ -0.31
SCN3B-202ENST00000392770 FNDC4Q9H6D8 234 aaPredicted RBP13.14□□□□□ -0.31
SCN3B-202ENST00000392770 RIF1Q5UIP0 2472 aaKnown RBP13.14□□□□□ -0.31
SCN3B-202ENST00000392770 IGHV4-30-2A0A087WSY4 118 aa13.14□□□□□ -0.31
SCN3B-202ENST00000392770 MRPL16Q9NX20 251 aaKnown RBP13.14□□□□□ -0.31
SCN3B-202ENST00000392770 C5orf30Q96GV9 206 aa13.14□□□□□ -0.31
SCN3B-202ENST00000392770 RNF114Q9Y508 228 aa13.14□□□□□ -0.31
SCN3B-202ENST00000392770 LINC00587B1AMM8 73 aa13.13□□□□□ -0.31
SCN3B-202ENST00000392770 IGLV2-14P01704 120 aa13.13□□□□□ -0.31
SCN3B-202ENST00000392770 DEFB112Q30KQ8 113 aa13.13□□□□□ -0.31
SCN3B-202ENST00000392770 PFN1P07737 140 aaKnown RBP13.13□□□□□ -0.31
SCN3B-202ENST00000392770 COL6A6A6NMZ7 2263 aa13.13□□□□□ -0.31
SCN3B-202ENST00000392770 NPBQ8NG41 125 aa13.13□□□□□ -0.31
SCN3B-202ENST00000392770 IGHV3-53P01767 116 aa13.13□□□□□ -0.31
SCN3B-202ENST00000392770 A0A087WWL8 130 aa13.12□□□□□ -0.31
SCN3B-202ENST00000392770 ZNF114Q8NC26 417 aa13.12□□□□□ -0.31
SCN3B-202ENST00000392770 OR13C6PQ8NH95 151 aa13.12□□□□□ -0.31
SCN3B-202ENST00000392770 MRPL27Q9P0M9 148 aaKnown RBP13.12□□□□□ -0.31
SCN3B-202ENST00000392770 TMEM213A2RRL7 107 aa13.12□□□□□ -0.31
SCN3B-202ENST00000392770 PCNX2A6NKB5 2137 aa13.12□□□□□ -0.31
SCN3B-202ENST00000392770 IGHV4-38-2P0DP08 117 aa13.12□□□□□ -0.31
SCN3B-202ENST00000392770 KLF2Q9Y5W3 355 aaPredicted RBP13.12□□□□□ -0.31
SCN3B-202ENST00000392770 IGHV4-59P01825 116 aa13.11□□□□□ -0.31
SCN3B-202ENST00000392770 DEFB113Q30KQ7 82 aa13.11□□□□□ -0.31
SCN3B-202ENST00000392770 CSTL1Q9H114 145 aa13.11□□□□□ -0.31
SCN3B-202ENST00000392770 LAMTOR2Q9Y2Q5 125 aa13.11□□□□□ -0.31
SCN3B-202ENST00000392770 V9GYV3 84 aa13.11□□□□□ -0.31
SCN3B-202ENST00000392770 ZNF876PQ49A33 203 aa13.11□□□□□ -0.31
SCN3B-202ENST00000392770 PRADC1Q9BSG0 188 aa13.11□□□□□ -0.31
SCN3B-202ENST00000392770 RNASE1P07998 156 aaKnown RBP13.11□□□□□ -0.31
SCN3B-202ENST00000392770 PLP1P60201 277 aa13.11□□□□□ -0.31
SCN3B-202ENST00000392770 Q71RC1 249 aaPredicted RBP13.11□□□□□ -0.31
SCN3B-202ENST00000392770 ZNF491Q8N8L2 437 aa13.11□□□□□ -0.31
SCN3B-202ENST00000392770 CENPVL3A0A0U1RRI6 287 aa13.11□□□□□ -0.31
SCN3B-202ENST00000392770 ASPHD1Q5U4P2 390 aa13.11□□□□□ -0.31
SCN3B-202ENST00000392770 DOCK7Q96N67 2140 aa13.1□□□□□ -0.31
SCN3B-202ENST00000392770 CT83Q5H943 113 aa13.1□□□□□ -0.31
SCN3B-202ENST00000392770 NRGNQ92686 78 aa13.1□□□□□ -0.31
SCN3B-202ENST00000392770 LRP4O75096 1905 aa13.1□□□□□ -0.31
SCN3B-202ENST00000392770 PRSS46E5RG02 174 aa13.1□□□□□ -0.31
SCN3B-202ENST00000392770 MRPS16Q9Y3D3 137 aaKnown RBP13.1□□□□□ -0.31
SCN3B-202ENST00000392770 NCKAP5O14513 1909 aa13.1□□□□□ -0.31
SCN3B-202ENST00000392770 ADARB2-AS1A8MUL3 147 aa13.1□□□□□ -0.31
SCN3B-202ENST00000392770 DAZAP2Q15038 168 aaPredicted RBP13.1□□□□□ -0.31
SCN3B-202ENST00000392770 NDUFAF3Q9BU61 184 aa13.1□□□□□ -0.31
SCN3B-202ENST00000392770 H3BUA1 57 aa13.09□□□□□ -0.31
SCN3B-202ENST00000392770 SPINK13Q1W4C9 94 aa13.09□□□□□ -0.31
SCN3B-202ENST00000392770 CFAP161Q6P656 301 aa13.09□□□□□ -0.31
SCN3B-202ENST00000392770 ODF3L1Q8IXM7 274 aa13.09□□□□□ -0.31
SCN3B-202ENST00000392770 MALP21145 153 aa13.09□□□□□ -0.31
SCN3B-202ENST00000392770 MS4A6AQ9H2W1 248 aa13.09□□□□□ -0.31
SCN3B-202ENST00000392770 LSM4Q9Y4Z0 139 aaKnown RBP13.09□□□□□ -0.31
SCN3B-202ENST00000392770 SMIM27A0A1W2PRY6 76 aa13.09□□□□□ -0.31
SCN3B-202ENST00000392770 OR2K2Q8NGT1 345 aa13.09□□□□□ -0.31
SCN3B-202ENST00000392770 CHCHD5Q9BSY4 110 aa13.09□□□□□ -0.31
SCN3B-202ENST00000392770 PRORYQ9H606 182 aa13.09□□□□□ -0.31
SCN3B-202ENST00000392770 IGHV3-64A0A075B6Q5 118 aa13.09□□□□□ -0.31
SCN3B-202ENST00000392770 LYPD6BQ8NI32 183 aa13.09□□□□□ -0.31
SCN3B-202ENST00000392770 KLK9Q9UKQ9 250 aa13.09□□□□□ -0.31
SCN3B-202ENST00000392770 IGHV7-4-1A0A0J9YVY3 117 aa13.09□□□□□ -0.31
SCN3B-202ENST00000392770 C10orf105Q8TEF2 133 aa13.09□□□□□ -0.31
SCN3B-202ENST00000392770 C17orf77Q96MU5 243 aa13.09□□□□□ -0.31
SCN3B-202ENST00000392770 PRR25Q96S07 402 aa13.09□□□□□ -0.31
SCN3B-202ENST00000392770 SMPXQ9UHP9 88 aa13.09□□□□□ -0.31
SCN3B-202ENST00000392770 VCYO14598 125 aa13.08□□□□□ -0.31
SCN3B-202ENST00000392770 FBXL19-AS1Q494R0 122 aa13.08□□□□□ -0.31
SCN3B-202ENST00000392770 TCTEX1D4Q5JR98 221 aa13.08□□□□□ -0.31
SCN3B-202ENST00000392770 TMEM158Q8WZ71 300 aa13.08□□□□□ -0.31
SCN3B-202ENST00000392770 VPREB3Q9UKI3 123 aa13.08□□□□□ -0.31
SCN3B-202ENST00000392770 C1QTNF4Q9BXJ3 329 aa13.08□□□□□ -0.32
SCN3B-202ENST00000392770 APOMO95445 188 aa13.08□□□□□ -0.32
SCN3B-202ENST00000392770 IGLV2-23P01705 113 aa13.08□□□□□ -0.32
SCN3B-202ENST00000392770 C3orf79P0CE67 100 aa13.08□□□□□ -0.32
SCN3B-202ENST00000392770 ZC2HC1AQ96GY0 325 aa13.08□□□□□ -0.32
SCN3B-202ENST00000392770 FAM231BA6NCW3 169 aa13.08□□□□□ -0.32
SCN3B-202ENST00000392770 LINC01549A6NIU2 74 aa13.08□□□□□ -0.32
SCN3B-202ENST00000392770 CD300EQ496F6 205 aaPredicted RBP13.08□□□□□ -0.32
SCN3B-202ENST00000392770 ZFP36P26651 326 aaKnown RBP13.08□□□□□ -0.32
SCN3B-202ENST00000392770 RIPPLY3P57055 190 aa13.08□□□□□ -0.32
SCN3B-202ENST00000392770 LINC01559Q495D7 138 aa13.08□□□□□ -0.32
SCN3B-202ENST00000392770 C11orf52Q96A22 123 aa13.07□□□□□ -0.32
SCN3B-202ENST00000392770 FAM231DQ6ZW35 169 aa13.07□□□□□ -0.32
SCN3B-202ENST00000392770 VGLL1Q99990 258 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 116.3 ms