RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 ZNF253O75346 499 aa15.35■□□□□ 0.05
CCDC28B-201ENST00000373602 MPDU1O75352 247 aa15.35■□□□□ 0.05
CCDC28B-201ENST00000373602 OR10J6PQ8NGY7 276 aa15.35■□□□□ 0.05
CCDC28B-201ENST00000373602 ZNF586Q9NXT0 402 aa15.35■□□□□ 0.05
CCDC28B-201ENST00000373602 INMT-MINDY4F8WBC2 141 aa15.34■□□□□ 0.05
CCDC28B-201ENST00000373602 RLN2P04090 185 aa15.34■□□□□ 0.05
CCDC28B-201ENST00000373602 NHLH2Q02577 135 aa15.34■□□□□ 0.05
CCDC28B-201ENST00000373602 TMEM88Q6PEY1 159 aa15.34■□□□□ 0.05
CCDC28B-201ENST00000373602 C20orf144Q9BQM9 153 aa15.34■□□□□ 0.05
CCDC28B-201ENST00000373602 NPCDR1Q9BY65 106 aa15.34■□□□□ 0.05
CCDC28B-201ENST00000373602 E5RGE8 158 aa15.33■□□□□ 0.04
CCDC28B-201ENST00000373602 H7BYZ3 331 aa15.33■□□□□ 0.04
CCDC28B-201ENST00000373602 KIR3DS1Q14943 382 aa15.33■□□□□ 0.04
CCDC28B-201ENST00000373602 C16orf74Q96GX8 76 aa15.33■□□□□ 0.04
CCDC28B-201ENST00000373602 PARD6GQ9BYG4 376 aaPredicted RBP15.33■□□□□ 0.04
CCDC28B-201ENST00000373602 SLC25A31Q9H0C2 315 aa15.33■□□□□ 0.04
CCDC28B-201ENST00000373602 OR5AC2Q9NZP5 309 aa15.33■□□□□ 0.04
CCDC28B-201ENST00000373602 TMEM14CQ9P0S9 112 aa15.33■□□□□ 0.04
CCDC28B-201ENST00000373602 H0YIZ8 118 aa15.32■□□□□ 0.04
CCDC28B-201ENST00000373602 DEFB130BP0DP73 79 aa15.32■□□□□ 0.04
CCDC28B-201ENST00000373602 DEFB130AP0DP74 79 aa15.32■□□□□ 0.04
CCDC28B-201ENST00000373602 HTN1P15515 57 aa15.32■□□□□ 0.04
CCDC28B-201ENST00000373602 FCN2Q15485 313 aa15.32■□□□□ 0.04
CCDC28B-201ENST00000373602 ZNF493Q6ZR52 646 aa15.32■□□□□ 0.04
CCDC28B-201ENST00000373602 OR5C1Q8NGR4 320 aa15.32■□□□□ 0.04
CCDC28B-201ENST00000373602 TRBV19A0A075B6N1 114 aa15.31■□□□□ 0.04
CCDC28B-201ENST00000373602 CYCSP99999 105 aaKnown RBP15.31■□□□□ 0.04
CCDC28B-201ENST00000373602 LRRC37A5PQ49AS3 106 aa15.31■□□□□ 0.04
CCDC28B-201ENST00000373602 GFI1BQ5VTD9 330 aa15.31■□□□□ 0.04
CCDC28B-201ENST00000373602 UBE2DNLQ8IWF7 75 aa15.31■□□□□ 0.04
CCDC28B-201ENST00000373602 MRPL53Q96EL3 112 aaKnown RBP15.31■□□□□ 0.04
CCDC28B-201ENST00000373602 ODF3Q96PU9 254 aa15.31■□□□□ 0.04
CCDC28B-201ENST00000373602 MARVELD1Q9BSK0 173 aa15.31■□□□□ 0.04
CCDC28B-201ENST00000373602 NPIPB6E9PJ23 425 aa15.3■□□□□ 0.04
CCDC28B-201ENST00000373602 HIST1H1EP10412 219 aaKnown RBP15.3■□□□□ 0.04
CCDC28B-201ENST00000373602 RNF212Q495C1 297 aa15.3■□□□□ 0.04
CCDC28B-201ENST00000373602 GCSAMLQ5JQS6 135 aa15.3■□□□□ 0.04
CCDC28B-201ENST00000373602 THAP6Q8TBB0 222 aa15.3■□□□□ 0.04
CCDC28B-201ENST00000373602 RNASE8Q8TDE3 154 aaKnown RBP15.3■□□□□ 0.04
CCDC28B-201ENST00000373602 TMEM263Q8WUH6 116 aaKnown RBP15.3■□□□□ 0.04
CCDC28B-201ENST00000373602 TIMM8BQ9Y5J9 83 aaPredicted RBP15.3■□□□□ 0.04
CCDC28B-201ENST00000373602 NDUFB4O95168 129 aa15.29■□□□□ 0.04
CCDC28B-201ENST00000373602 CT45A10P0DMU9 189 aa15.29■□□□□ 0.04
CCDC28B-201ENST00000373602 PDE6HQ13956 83 aa15.29■□□□□ 0.04
CCDC28B-201ENST00000373602 LINC00336Q6ZUF6 198 aa15.29■□□□□ 0.04
CCDC28B-201ENST00000373602 C15orf53Q8NAA6 179 aa15.29■□□□□ 0.04
CCDC28B-201ENST00000373602 CBY3A6NI87 242 aa15.28■□□□□ 0.04
CCDC28B-201ENST00000373602 M0R3E3 92 aa15.28■□□□□ 0.04
CCDC28B-201ENST00000373602 PYYP10082 97 aa15.28■□□□□ 0.04
CCDC28B-201ENST00000373602 LEPP41159 167 aa15.28■□□□□ 0.04
CCDC28B-201ENST00000373602 H2BFSP57053 126 aa15.28■□□□□ 0.04
CCDC28B-201ENST00000373602 CLINT1Q14677 625 aa15.28■□□□□ 0.04
CCDC28B-201ENST00000373602 LGALS9BQ3B8N2 356 aa15.28■□□□□ 0.04
CCDC28B-201ENST00000373602 M0R2N4 97 aa15.27■□□□□ 0.04
CCDC28B-201ENST00000373602 ATP5G1P05496 136 aa15.27■□□□□ 0.04
CCDC28B-201ENST00000373602 ATP5G3P48201 142 aa15.27■□□□□ 0.04
CCDC28B-201ENST00000373602 DEFA1P59665 94 aa15.27■□□□□ 0.04
CCDC28B-201ENST00000373602 DEFA3P59666 94 aa15.27■□□□□ 0.04
CCDC28B-201ENST00000373602 SLC25A2Q9BXI2 301 aa15.27■□□□□ 0.04
CCDC28B-201ENST00000373602 WDR61Q9GZS3 305 aaKnown RBP15.27■□□□□ 0.04
CCDC28B-201ENST00000373602 PRELID1Q9Y255 219 aa15.27■□□□□ 0.04
CCDC28B-201ENST00000373602 TIMM9Q9Y5J7 89 aa15.27■□□□□ 0.04
CCDC28B-201ENST00000373602 F5H768 121 aa15.26■□□□□ 0.03
CCDC28B-201ENST00000373602 PPP1R1CQ8WVI7 109 aa15.26■□□□□ 0.03
CCDC28B-201ENST00000373602 FAM167A-AS1Q96KT0 104 aa15.26■□□□□ 0.03
CCDC28B-201ENST00000373602 NOP10Q9NPE3 64 aaKnown RBP15.26■□□□□ 0.03
CCDC28B-201ENST00000373602 J3KRW8 73 aa15.25■□□□□ 0.03
CCDC28B-201ENST00000373602 MIR17HGQ75NE6 70 aa15.25■□□□□ 0.03
CCDC28B-201ENST00000373602 CCDC28AQ8IWP9 274 aa15.25■□□□□ 0.03
CCDC28B-201ENST00000373602 BLNKQ8WV28 456 aa15.25■□□□□ 0.03
CCDC28B-201ENST00000373602 KCNIP2Q9NS61 270 aa15.25■□□□□ 0.03
CCDC28B-201ENST00000373602 TRAV12-3A0A0B4J271 114 aa15.24■□□□□ 0.03
CCDC28B-201ENST00000373602 SSNA1O43805 119 aa15.24■□□□□ 0.03
CCDC28B-201ENST00000373602 Q6ZR54 194 aa15.24■□□□□ 0.03
CCDC28B-201ENST00000373602 EXOC3-AS1Q8N2X6 119 aa15.24■□□□□ 0.03
CCDC28B-201ENST00000373602 LINC00612Q8N6U2 182 aa15.24■□□□□ 0.03
CCDC28B-201ENST00000373602 DNAH2Q9P225 4427 aa15.24■□□□□ 0.03
CCDC28B-201ENST00000373602 IGLV2-18A0A075B6J9 118 aa15.23■□□□□ 0.03
CCDC28B-201ENST00000373602 RTL8CO15255 209 aa15.23■□□□□ 0.03
CCDC28B-201ENST00000373602 MPC2O95563 127 aa15.23■□□□□ 0.03
CCDC28B-201ENST00000373602 SLC25A5P05141 298 aaKnown RBP15.23■□□□□ 0.03
CCDC28B-201ENST00000373602 ERCC8Q13216 396 aa15.23■□□□□ 0.03
CCDC28B-201ENST00000373602 LINC00477Q96M19 166 aa15.23■□□□□ 0.03
CCDC28B-201ENST00000373602 PYGO2Q9BRQ0 406 aa15.23■□□□□ 0.03
CCDC28B-201ENST00000373602 MRPL32Q9BYC8 188 aaKnown RBP15.23■□□□□ 0.03
CCDC28B-201ENST00000373602 AGPAT4-IT1Q9H0P7 198 aa15.23■□□□□ 0.03
CCDC28B-201ENST00000373602 AAMDCQ9H7C9 122 aa15.23■□□□□ 0.03
CCDC28B-201ENST00000373602 NACAE9PAV3 2078 aa15.22■□□□□ 0.03
CCDC28B-201ENST00000373602 C17orf112F2Z3M2 114 aa15.22■□□□□ 0.03
CCDC28B-201ENST00000373602 FAM3BP58499 235 aaPredicted RBP15.22■□□□□ 0.03
CCDC28B-201ENST00000373602 FAM19A4Q96LR4 140 aa15.22■□□□□ 0.03
CCDC28B-201ENST00000373602 ATP5SQ99766 215 aa15.22■□□□□ 0.03
CCDC28B-201ENST00000373602 OR51M1Q9H341 326 aa15.22■□□□□ 0.03
CCDC28B-201ENST00000373602 HSPB11Q9Y547 144 aa15.22■□□□□ 0.03
CCDC28B-201ENST00000373602 FAT2Q9NYQ8 4349 aa15.22■□□□□ 0.03
CCDC28B-201ENST00000373602 HECTD4Q9Y4D8 3996 aa15.22■□□□□ 0.03
CCDC28B-201ENST00000373602 DNAH17Q9UFH2 4485 aa15.21■□□□□ 0.03
CCDC28B-201ENST00000373602 KLLNB2CW77 178 aa15.21■□□□□ 0.03
CCDC28B-201ENST00000373602 NBEAP1P0C6P0 100 aa15.21■□□□□ 0.03
CCDC28B-201ENST00000373602 PET100P0DJ07 73 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms