RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 KLF5Q13887 457 aaPredicted RBP1.73□□□□□ -2.13
VPS54-202ENST00000354504 PEA15Q15121 130 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 CLEC12BQ2HXU8 276 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 C5orf64Q2M2E5 130 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 ZNF674Q2M3X9 581 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 C9orf152Q5JTZ5 239 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 ZNF562Q6V9R5 426 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 CIARTQ8N365 385 aaPredicted RBP1.73□□□□□ -2.13
VPS54-202ENST00000354504 DEFB125Q8N687 156 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 OR10P1Q8NGE3 313 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 SSMEM1Q8WWF3 244 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 SFRP2Q96HF1 295 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 HARBI1Q96MB7 349 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 CLEC7AQ9BXN2 247 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 BPESC1Q9GZL8 116 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 GSN-AS1Q9NRJ2 163 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 SMCO4Q9NRQ5 59 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 GNG13Q9P2W3 67 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 AMMECR1Q9Y4X0 333 aaPredicted RBP1.73□□□□□ -2.13
VPS54-202ENST00000354504 TNXBP22105 4242 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 TRBV19A0A075B6N1 114 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 IGHV3-21A0A0B4J1V1 117 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 C2orf70A6NJV1 201 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 C11orf94C9JXX5 98 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 TGOLN2O43493 480 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 CXorf1O96002 111 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 SNRNP70P08621 437 aaKnown RBP1.73□□□□□ -2.13
VPS54-202ENST00000354504 IGLC6P0CF74 106 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 PSG1P11464 419 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 OR10J1P30954 320 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 LINC00315P59091 139 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 B2MP61769 119 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 HBG1P69891 147 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 HBG2P69892 147 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 EIF5AL1Q6IS14 154 aaKnown RBP1.73□□□□□ -2.13
VPS54-202ENST00000354504 UFSP1Q6NVU6 142 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 PET117Q6UWS5 81 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 ZNF493Q6ZR52 646 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 STX12Q86Y82 276 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 TMEM183AQ8IXX5 376 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 TMEM256Q8N2U0 113 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 GBGT1Q8N5D6 347 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 SGMS2Q8NHU3 365 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 SCGB1C1Q8TD33 95 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 SRSF12Q8WXF0 261 aaKnown RBP1.73□□□□□ -2.13
VPS54-202ENST00000354504 C22orf15Q8WYQ4 148 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 SMIM12Q96EX1 92 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 RNF185Q96GF1 192 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 SHANK2-AS3Q9BTD1 123 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 FBXL15Q9H469 300 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 DNAJC4Q9NNZ3 241 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 NGBQ9NPG2 151 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 MIOXQ9UGB7 285 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 TBL2Q9Y4P3 447 aaKnown RBP1.73□□□□□ -2.13
VPS54-202ENST00000354504 PUS1Q9Y606 427 aaKnown RBP eCLIP1.73□□□□□ -2.13
VPS54-202ENST00000354504 URGCP-MRPS24S4R325 110 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 KIR2DL5BA0A0G2JN68 375 aa1.72□□□□□ -2.13
VPS54-202ENST00000354504 KIR2DL5BA0A0G2JPC4 375 aa1.72□□□□□ -2.13
VPS54-202ENST00000354504 A0A1W2PN81 502 aa1.72□□□□□ -2.13
VPS54-202ENST00000354504 LINC00587B1AMM8 73 aa1.72□□□□□ -2.13
VPS54-202ENST00000354504 BMPR1BO00238 502 aa1.72□□□□□ -2.13
VPS54-202ENST00000354504 PDE6DO43924 150 aa1.72□□□□□ -2.13
VPS54-202ENST00000354504 HRASP01112 189 aa1.72□□□□□ -2.13
VPS54-202ENST00000354504 PSMB8P28062 276 aa1.72□□□□□ -2.13
VPS54-202ENST00000354504 CHRNA7P36544 502 aa1.72□□□□□ -2.13
VPS54-202ENST00000354504 SRP14P37108 136 aaKnown RBP1.72□□□□□ -2.13
VPS54-202ENST00000354504 AKR1D1P51857 326 aa1.72□□□□□ -2.13
VPS54-202ENST00000354504 EFNA4P52798 201 aa1.72□□□□□ -2.13
VPS54-202ENST00000354504 RIPPLY3P57055 190 aa1.72□□□□□ -2.13
VPS54-202ENST00000354504 ARF6P62330 175 aa1.72□□□□□ -2.13
VPS54-202ENST00000354504 RAB11AP62491 216 aa1.72□□□□□ -2.13
VPS54-202ENST00000354504 Q0VG73 95 aa1.72□□□□□ -2.13
VPS54-202ENST00000354504 HES1Q14469 280 aa1.72□□□□□ -2.13
VPS54-202ENST00000354504 PLGLAQ15195 96 aa1.72□□□□□ -2.13
VPS54-202ENST00000354504 MINOS1Q5TGZ0 78 aa1.72□□□□□ -2.13
VPS54-202ENST00000354504 C10orf99Q6UWK7 81 aa1.72□□□□□ -2.13
VPS54-202ENST00000354504 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.72□□□□□ -2.13
VPS54-202ENST00000354504 TMEM219Q86XT9 240 aa1.72□□□□□ -2.13
VPS54-202ENST00000354504 KIR2DL5AQ8N109 375 aa1.72□□□□□ -2.13
VPS54-202ENST00000354504 OR10X1Q8NGY0 326 aa1.72□□□□□ -2.13
VPS54-202ENST00000354504 FLYWCH2Q96CP2 140 aaKnown RBP1.72□□□□□ -2.13
VPS54-202ENST00000354504 ZC2HC1AQ96GY0 325 aa1.72□□□□□ -2.13
VPS54-202ENST00000354504 RBM14Q96PK6 669 aaKnown RBP1.72□□□□□ -2.13
VPS54-202ENST00000354504 C19orf24Q9BVV8 132 aa1.72□□□□□ -2.13
VPS54-202ENST00000354504 MRPL32Q9BYC8 188 aaKnown RBP1.72□□□□□ -2.13
VPS54-202ENST00000354504 SLC25A39Q9BZJ4 359 aaPredicted RBP1.72□□□□□ -2.13
VPS54-202ENST00000354504 ACTR3CQ9C0K3 210 aaPredicted RBP1.72□□□□□ -2.13
VPS54-202ENST00000354504 RNASE7Q9H1E1 156 aaKnown RBP1.72□□□□□ -2.13
VPS54-202ENST00000354504 SCRT2Q9NQ03 307 aa1.72□□□□□ -2.13
VPS54-202ENST00000354504 ZNF355PQ9NSJ1 428 aa1.72□□□□□ -2.13
VPS54-202ENST00000354504 ZNF492Q9P255 531 aa1.72□□□□□ -2.13
VPS54-202ENST00000354504 MINOS1-NBL1R4GNA1 71 aa1.72□□□□□ -2.13
VPS54-202ENST00000354504 IGHV3OR16-10A0A075B7F0 116 aa1.72□□□□□ -2.13
VPS54-202ENST00000354504 PRAC2D3DTV9 90 aa1.72□□□□□ -2.13
VPS54-202ENST00000354504 NBR2O15453 112 aa1.72□□□□□ -2.13
VPS54-202ENST00000354504 BUB3O43684 328 aa1.72□□□□□ -2.13
VPS54-202ENST00000354504 MT-CO2P00403 227 aa1.72□□□□□ -2.13
VPS54-202ENST00000354504 MOSP00540 346 aa1.72□□□□□ -2.13
VPS54-202ENST00000354504 IFNA5P01569 189 aa1.72□□□□□ -2.13
VPS54-202ENST00000354504 IGHG2P01859 326 aa1.72□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms