RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 OR10D4PQ8NGN7 298 aa14.08□□□□□ -0.16
USP39-201ENST00000323701 MYOZ3Q8TDC0 251 aa14.08□□□□□ -0.16
USP39-201ENST00000323701 TM4SF20Q53R12 229 aa14.07□□□□□ -0.16
USP39-201ENST00000323701 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa14.07□□□□□ -0.16
USP39-201ENST00000323701 Q6ZSV7 163 aa14.07□□□□□ -0.16
USP39-201ENST00000323701 C18orf65Q6ZTR6 163 aa14.07□□□□□ -0.16
USP39-201ENST00000323701 LYPD1Q8N2G4 141 aa14.07□□□□□ -0.16
USP39-201ENST00000323701 OR10G8Q8NGN5 311 aa14.07□□□□□ -0.16
USP39-201ENST00000323701 CMTM2Q8TAZ6 248 aa14.07□□□□□ -0.16
USP39-201ENST00000323701 LY6G6DO95868 133 aa14.07□□□□□ -0.16
USP39-201ENST00000323701 ERVFC1-1P60608 527 aa14.07□□□□□ -0.16
USP39-201ENST00000323701 UBE2G1P62253 170 aa14.07□□□□□ -0.16
USP39-201ENST00000323701 FOXE3Q13461 319 aa14.07□□□□□ -0.16
USP39-201ENST00000323701 TMEM190Q8WZ59 177 aa14.07□□□□□ -0.16
USP39-201ENST00000323701 SETXQ7Z333 2677 aaKnown RBP14.07□□□□□ -0.16
USP39-201ENST00000323701 TMEM89A2RUT3 159 aa14.06□□□□□ -0.16
USP39-201ENST00000323701 ZNF705FA8MVS1 300 aaPredicted RBP14.06□□□□□ -0.16
USP39-201ENST00000323701 PPP1R2P9O14990 202 aa14.06□□□□□ -0.16
USP39-201ENST00000323701 GGCTO75223 188 aaKnown RBP14.06□□□□□ -0.16
USP39-201ENST00000323701 TCTEX1D4Q5JR98 221 aa14.06□□□□□ -0.16
USP39-201ENST00000323701 REC114Q7Z4M0 266 aa14.06□□□□□ -0.16
USP39-201ENST00000323701 MLST8Q9BVC4 326 aa14.06□□□□□ -0.16
USP39-201ENST00000323701 V9GYV3 84 aa14.06□□□□□ -0.16
USP39-201ENST00000323701 DIRC3C9JPN6 131 aa14.06□□□□□ -0.16
USP39-201ENST00000323701 LTAP01374 205 aa14.06□□□□□ -0.16
USP39-201ENST00000323701 SLC35B1P78383 322 aa14.06□□□□□ -0.16
USP39-201ENST00000323701 LINC00322Q6ZN03 302 aaPredicted RBP14.06□□□□□ -0.16
USP39-201ENST00000323701 RNF182Q8N6D2 247 aa14.06□□□□□ -0.16
USP39-201ENST00000323701 SRD5A3Q9H8P0 318 aa14.06□□□□□ -0.16
USP39-201ENST00000323701 ZNF331Q9NQX6 463 aaPredicted RBP14.06□□□□□ -0.16
USP39-201ENST00000323701 A0A1W2PPQ1 181 aa14.05□□□□□ -0.16
USP39-201ENST00000323701 ZNF785A8K8V0 405 aa14.05□□□□□ -0.16
USP39-201ENST00000323701 PKIAP61925 76 aa14.05□□□□□ -0.16
USP39-201ENST00000323701 C1orf194Q5T5A4 169 aa14.05□□□□□ -0.16
USP39-201ENST00000323701 KLHDC1Q8N7A1 406 aa14.05□□□□□ -0.16
USP39-201ENST00000323701 GLMPQ8WWB7 406 aa14.05□□□□□ -0.16
USP39-201ENST00000323701 FMC1Q96HJ9 113 aa14.05□□□□□ -0.16
USP39-201ENST00000323701 ELANEP08246 267 aa14.05□□□□□ -0.16
USP39-201ENST00000323701 C16orf54Q6UWD8 224 aa14.05□□□□□ -0.16
USP39-201ENST00000323701 Q86TA4 180 aa14.05□□□□□ -0.16
USP39-201ENST00000323701 RNF152Q8N8N0 203 aa14.05□□□□□ -0.16
USP39-201ENST00000323701 GPR82Q96P67 336 aa14.05□□□□□ -0.16
USP39-201ENST00000323701 NIPBLQ6KC79 2804 aaeCLIP14.04□□□□□ -0.165e-6■■■■■ 32.2
USP39-201ENST00000323701 IGKV2-40A0A087WW87 121 aaPredicted RBP14.04□□□□□ -0.16
USP39-201ENST00000323701 A0A087X0K7 114 aa14.04□□□□□ -0.16
USP39-201ENST00000323701 CA1P00915 261 aaPredicted RBP14.04□□□□□ -0.16
USP39-201ENST00000323701 IGKV2D-40P01614 121 aaPredicted RBP14.04□□□□□ -0.16
USP39-201ENST00000323701 PRR27Q6MZM9 219 aa14.04□□□□□ -0.16
USP39-201ENST00000323701 PRNTQ86SH4 94 aa14.04□□□□□ -0.16
USP39-201ENST00000323701 AAMDCQ9H7C9 122 aa14.04□□□□□ -0.16
USP39-201ENST00000323701 TRAV8-2A0A0B4J237 113 aa14.03□□□□□ -0.16
USP39-201ENST00000323701 A0A1B0GV90 55 aa14.03□□□□□ -0.16
USP39-201ENST00000323701 PRAC2D3DTV9 90 aa14.03□□□□□ -0.16
USP39-201ENST00000323701 TSTD3H0UI37 97 aa14.03□□□□□ -0.16
USP39-201ENST00000323701 DDTP30046 118 aa14.03□□□□□ -0.16
USP39-201ENST00000323701 PSG9Q00887 426 aa14.03□□□□□ -0.16
USP39-201ENST00000323701 IBA57Q5T440 356 aaKnown RBP14.03□□□□□ -0.16
USP39-201ENST00000323701 GPHB5Q86YW7 130 aa14.03□□□□□ -0.16
USP39-201ENST00000323701 IGHV4OR15-8A0A075B7B6 117 aa14.02□□□□□ -0.16
USP39-201ENST00000323701 A0A087WW49 117 aa14.02□□□□□ -0.16
USP39-201ENST00000323701 DEFB136Q30KP8 78 aa14.02□□□□□ -0.16
USP39-201ENST00000323701 LGALS1P09382 135 aaKnown RBP14.02□□□□□ -0.17
USP39-201ENST00000323701 FABP4P15090 132 aa14.02□□□□□ -0.17
USP39-201ENST00000323701 S100A7P31151 101 aa14.02□□□□□ -0.17
USP39-201ENST00000323701 PSG3Q16557 428 aa14.02□□□□□ -0.17
USP39-201ENST00000323701 C8orf86Q6ZUL3 223 aa14.02□□□□□ -0.17
USP39-201ENST00000323701 UBE2E2Q96LR5 201 aa14.02□□□□□ -0.17
USP39-201ENST00000323701 OSTCQ9NRP0 149 aa14.02□□□□□ -0.17
USP39-201ENST00000323701 CHEK1O14757 476 aa14.01□□□□□ -0.17
USP39-201ENST00000323701 ZNF253O75346 499 aa14.01□□□□□ -0.17
USP39-201ENST00000323701 NUDT10Q8NFP7 164 aa14.01□□□□□ -0.17
USP39-201ENST00000323701 NUDT11Q96G61 164 aa14.01□□□□□ -0.17
USP39-201ENST00000323701 DAZ1Q9NQZ3 744 aaKnown RBP14.01□□□□□ -0.17
USP39-201ENST00000323701 FN1P02751 2386 aaKnown RBP14.01□□□□□ -0.17
USP39-201ENST00000323701 FRMD6-AS1P0C7T7 363 aa14□□□□□ -0.17
USP39-201ENST00000323701 SRD5A1P18405 259 aa14□□□□□ -0.17
USP39-201ENST00000323701 FOXL1Q12952 345 aa14□□□□□ -0.17
USP39-201ENST00000323701 TMEM75Q8N9X5 138 aa14□□□□□ -0.17
USP39-201ENST00000323701 VGLL1Q99990 258 aa14□□□□□ -0.17
USP39-201ENST00000323701 RHPN1-AS1Q9BWJ2 59 aa14□□□□□ -0.17
USP39-201ENST00000323701 PSG8Q9UQ74 426 aa14□□□□□ -0.17
USP39-201ENST00000323701 IGHV7-4-1A0A0J9YVY3 117 aa14□□□□□ -0.17
USP39-201ENST00000323701 RPEL1Q2QD12 228 aa14□□□□□ -0.17
USP39-201ENST00000323701 LBHQ53QV2 105 aaPredicted RBP14□□□□□ -0.17
USP39-201ENST00000323701 LCN12Q6JVE5 192 aa14□□□□□ -0.17
USP39-201ENST00000323701 TMEM160Q9NX00 188 aa14□□□□□ -0.17
USP39-201ENST00000323701 IL36BQ9NZH7 164 aa14□□□□□ -0.17
USP39-201ENST00000323701 HIST1H2BLQ99880 126 aa13.99□□□□□ -0.17
USP39-201ENST00000323701 TCL1AP56279 114 aa13.99□□□□□ -0.17
USP39-201ENST00000323701 FAM106AQ4KMX7 169 aa13.99□□□□□ -0.17
USP39-201ENST00000323701 TMEM183AQ8IXX5 376 aa13.99□□□□□ -0.17
USP39-201ENST00000323701 Q8TAT8 98 aa13.99□□□□□ -0.17
USP39-201ENST00000323701 ZC2HC1AQ96GY0 325 aa13.99□□□□□ -0.17
USP39-201ENST00000323701 C8orf49Q96NF6 230 aa13.99□□□□□ -0.17
USP39-201ENST00000323701 DUX3Q96PT4 197 aa13.99□□□□□ -0.17
USP39-201ENST00000323701 IMMP2LQ96T52 175 aa13.99□□□□□ -0.17
USP39-201ENST00000323701 IGKV3-7A0A075B6H7 116 aa13.98□□□□□ -0.17
USP39-201ENST00000323701 TMEM213A2RRL7 107 aa13.98□□□□□ -0.17
USP39-201ENST00000323701 ZNF705GA8MUZ8 300 aaPredicted RBP13.98□□□□□ -0.17
USP39-201ENST00000323701 RNASE1P07998 156 aaKnown RBP13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 114.3 ms